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Mathematical model of TGF-ßsignalling: feedback coupling is consistent with signal switching.
Khatibi, Shabnam; Zhu, Hong-Jian; Wagner, John; Tan, Chin Wee; Manton, Jonathan H; Burgess, Antony W.
Afiliación
  • Khatibi S; Electrical and Electronic Engineering Department, The University of Melbourne, Parkville, Victoria, 3010, Australia.
  • Zhu HJ; The Walter and Eliza Hall Institute of Medical Research (WEHI), 1G Royal Parade, Parkville, Victoria, 3052, Australia.
  • Wagner J; Department of Surgery (RMH), The University of Melbourne, Parkville, Victoria, 3050, Australia.
  • Tan CW; IBM Research Collaboratory for Life Sciences-Melbourne, Victorian Life Sciences Computation Initiative, 87 Grattan Street, Victoria, 3010, Australia.
  • Manton JH; IBM Research-Australia, 204 Lygon Street Level 5, Carlton, Victoria, 3053, Australia.
  • Burgess AW; The Walter and Eliza Hall Institute of Medical Research (WEHI), 1G Royal Parade, Parkville, Victoria, 3052, Australia.
BMC Syst Biol ; 11(1): 48, 2017 04 13.
Article en En | MEDLINE | ID: mdl-28407804
ABSTRACT

BACKGROUND:

Transforming growth factor ß (TGF-ß) signalling regulates the development of embryos and tissue homeostasis in adults. In conjunction with other oncogenic changes, long-term perturbation of TGF-ß signalling is associated with cancer metastasis. Although TGF-ß signalling can be complex, many of the signalling components are well defined, so it is possible to develop mathematical models of TGF-ß signalling using reduction and scaling methods. The parameterization of our TGF-ß signalling model is consistent with experimental data.

RESULTS:

We developed our mathematical model for the TGF-ß signalling pathway, i.e. the RF- model of TGF-ß signalling, using the "rapid equilibrium assumption" to reduce the network of TGF-ß signalling reactions based on the time scales of the individual reactions. By adding time-delayed positive feedback to the inherent time-delayed negative feedback for TGF-ß signalling. We were able to simulate the sigmoidal, switch-like behaviour observed for the concentration dependence of long-term (> 3 hours) TGF-ß stimulation. Computer simulations revealed the vital role of the coupling of the positive and negative feedback loops on the regulation of the TGF-ß signalling system. The incorporation of time-delays for the negative feedback loop improved the accuracy, stability and robustness of the model. This model reproduces both the short-term and long-term switching responses for the intracellular signalling pathways at different TGF-ß concentrations. We have tested the model against experimental data from MEF (mouse embryonic fibroblasts) WT, SV40-immortalized MEFs and Gp130 F/F MEFs. The predictions from the RF- model are consistent with the experimental data.

CONCLUSIONS:

Signalling feedback loops are required to model TGF-ß signal transduction and its effects on normal and cancer cells. We focus on the effects of time-delayed feedback loops and their coupling to ligand stimulation in this system. The model was simplified and reduced to its key components using standard methods and the rapid equilibrium assumption. We detected differences in short-term and long-term signal switching. The results from the RF- model compare well with experimental data and predict the dynamics of TGF-ß signalling in cancer cells with different mutations.
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Texto completo: 1 Colección: 01-internacional Banco de datos: MEDLINE Asunto principal: Transducción de Señal / Factor de Crecimiento Transformador beta / Retroalimentación Fisiológica / Modelos Biológicos Tipo de estudio: Prognostic_studies Límite: Animals Idioma: En Revista: BMC Syst Biol Asunto de la revista: BIOLOGIA / BIOTECNOLOGIA Año: 2017 Tipo del documento: Article País de afiliación: Australia

Texto completo: 1 Colección: 01-internacional Banco de datos: MEDLINE Asunto principal: Transducción de Señal / Factor de Crecimiento Transformador beta / Retroalimentación Fisiológica / Modelos Biológicos Tipo de estudio: Prognostic_studies Límite: Animals Idioma: En Revista: BMC Syst Biol Asunto de la revista: BIOLOGIA / BIOTECNOLOGIA Año: 2017 Tipo del documento: Article País de afiliación: Australia