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An open challenge to advance probabilistic forecasting for dengue epidemics.
Johansson, Michael A; Apfeldorf, Karyn M; Dobson, Scott; Devita, Jason; Buczak, Anna L; Baugher, Benjamin; Moniz, Linda J; Bagley, Thomas; Babin, Steven M; Guven, Erhan; Yamana, Teresa K; Shaman, Jeffrey; Moschou, Terry; Lothian, Nick; Lane, Aaron; Osborne, Grant; Jiang, Gao; Brooks, Logan C; Farrow, David C; Hyun, Sangwon; Tibshirani, Ryan J; Rosenfeld, Roni; Lessler, Justin; Reich, Nicholas G; Cummings, Derek A T; Lauer, Stephen A; Moore, Sean M; Clapham, Hannah E; Lowe, Rachel; Bailey, Trevor C; García-Díez, Markel; Carvalho, Marilia Sá; Rodó, Xavier; Sardar, Tridip; Paul, Richard; Ray, Evan L; Sakrejda, Krzysztof; Brown, Alexandria C; Meng, Xi; Osoba, Osonde; Vardavas, Raffaele; Manheim, David; Moore, Melinda; Rao, Dhananjai M; Porco, Travis C; Ackley, Sarah; Liu, Fengchen; Worden, Lee; Convertino, Matteo; Liu, Yang.
Afiliación
  • Johansson MA; Division of Vector-Borne Diseases, Centers for Disease Control and Prevention, San Juan 00920, Puerto Rico; mjohansson@cdc.gov.
  • Apfeldorf KM; Department of Epidemiology, Harvard T. H. Chan School of Public Health, Boston, MA 02115.
  • Dobson S; Data Analytics, Areté Associates, Northridge, CA 91324.
  • Devita J; Data Analytics, Areté Associates, Northridge, CA 91324.
  • Buczak AL; Data Analytics, Areté Associates, Northridge, CA 91324.
  • Baugher B; Systems Integration Branch, Johns Hopkins University Applied Physics Laboratory, Laurel, MD 20723.
  • Moniz LJ; Systems Integration Branch, Johns Hopkins University Applied Physics Laboratory, Laurel, MD 20723.
  • Bagley T; Systems Integration Branch, Johns Hopkins University Applied Physics Laboratory, Laurel, MD 20723.
  • Babin SM; Systems Integration Branch, Johns Hopkins University Applied Physics Laboratory, Laurel, MD 20723.
  • Guven E; Systems Integration Branch, Johns Hopkins University Applied Physics Laboratory, Laurel, MD 20723.
  • Yamana TK; Systems Integration Branch, Johns Hopkins University Applied Physics Laboratory, Laurel, MD 20723.
  • Shaman J; Department of Environmental Health Sciences, Mailman School of Public Health, Columbia University, New York, NY 10032.
  • Moschou T; Department of Environmental Health Sciences, Mailman School of Public Health, Columbia University, New York, NY 10032.
  • Lothian N; Data to Decisions Cooperative Research Center, Kent Town, SA 5067, Australia.
  • Lane A; Data to Decisions Cooperative Research Center, Kent Town, SA 5067, Australia.
  • Osborne G; Data to Decisions Cooperative Research Center, Kent Town, SA 5067, Australia.
  • Jiang G; Data to Decisions Cooperative Research Center, Kent Town, SA 5067, Australia.
  • Brooks LC; Heinz College Information System Management, Carnegie Mellon University, Adelaide, SA 5000, Australia.
  • Farrow DC; School of Computer Science, Carnegie Mellon University, Pittsburgh, PA 15213.
  • Hyun S; School of Computer Science, Carnegie Mellon University, Pittsburgh, PA 15213.
  • Tibshirani RJ; Department of Statistics, Carnegie Mellon University, Pittsburgh, PA 15213.
  • Rosenfeld R; School of Computer Science, Carnegie Mellon University, Pittsburgh, PA 15213.
  • Lessler J; Department of Statistics, Carnegie Mellon University, Pittsburgh, PA 15213.
  • Reich NG; School of Computer Science, Carnegie Mellon University, Pittsburgh, PA 15213.
  • Cummings DAT; Department of Epidemiology, Johns Hopkins Bloomberg School of Public Health, Baltimore, MD 21205.
  • Lauer SA; Department of Biostatistics and Epidemiology, School of Public Health and Health Sciences, University of Massachusetts, Amherst, MA 01003.
  • Moore SM; Department of Biology, University of Florida, Gainesville, FL 32611.
  • Clapham HE; Emerging Pathogens Institute, University of Florida, Gainesville, FL 32611.
  • Lowe R; Department of Biostatistics and Epidemiology, School of Public Health and Health Sciences, University of Massachusetts, Amherst, MA 01003.
  • Bailey TC; Department of Biological Sciences, University of Notre Dame, Notre Dame, IN 46556.
  • García-Díez M; Eck Institute for Global Health, University of Notre Dame, Notre Dame, IN 46556.
  • Carvalho MS; Hospital for Tropical Diseases, Oxford University Clinical Research Unit, Ho Chi Minh City, Vietnam.
  • Rodó X; Department of Infectious Disease Epidemiology, London School of Hygiene & Tropical Medicine, London WC1E 7HT, United Kingdom.
  • Sardar T; Climate and Health Program, Barcelona Institute for Global Health, 08003 Barcelona, Spain.
  • Paul R; College of Engineering, Mathematics and Physical Sciences, University of Exeter, Exeter EX4 4QF, United Kingdom.
  • Ray EL; Predictia Intelligent Data Solutions, 39005 Santander, Spain.
  • Sakrejda K; Scientific Computation Program, Oswaldo Cruz Foundation, Rio de Janeiro 21040-900, Brazil.
  • Brown AC; Climate and Health Program, Barcelona Institute for Global Health, 08003 Barcelona, Spain.
  • Meng X; Catalan Institution for Research and Advanced Studies, 08010 Barcelona, Spain.
  • Osoba O; Catalan Institution for Research and Advanced Studies, 08010 Barcelona, Spain.
  • Vardavas R; Department of Mathematical Biology, Indian Statistical Institute, Kolkata, India 700108.
  • Manheim D; Pasteur Kyoto International Joint Research Unit for Integrative Vaccinomics, 606-8501 Kyoto, Japan.
  • Moore M; Department of Global Health, Centre National de la Recherche Scientifique, 75016 Paris, France.
  • Rao DM; Department of Biostatistics and Epidemiology, School of Public Health and Health Sciences, University of Massachusetts, Amherst, MA 01003.
  • Porco TC; Department of Biostatistics and Epidemiology, School of Public Health and Health Sciences, University of Massachusetts, Amherst, MA 01003.
  • Ackley S; Department of Biostatistics and Epidemiology, School of Public Health and Health Sciences, University of Massachusetts, Amherst, MA 01003.
  • Liu F; Department of Mathematics and Statistics, Mount Holyoke College, South Hadley, MA 01075.
  • Worden L; Department of Mathematics and Statistics, Mount Holyoke College, South Hadley, MA 01075.
  • Convertino M; RAND Corporation, Santa MonicaCA 90401.
  • Liu Y; Department of Mathematics and Statistics, Mount Holyoke College, South Hadley, MA 01075.
Proc Natl Acad Sci U S A ; 116(48): 24268-24274, 2019 11 26.
Article en En | MEDLINE | ID: mdl-31712420
A wide range of research has promised new tools for forecasting infectious disease dynamics, but little of that research is currently being applied in practice, because tools do not address key public health needs, do not produce probabilistic forecasts, have not been evaluated on external data, or do not provide sufficient forecast skill to be useful. We developed an open collaborative forecasting challenge to assess probabilistic forecasts for seasonal epidemics of dengue, a major global public health problem. Sixteen teams used a variety of methods and data to generate forecasts for 3 epidemiological targets (peak incidence, the week of the peak, and total incidence) over 8 dengue seasons in Iquitos, Peru and San Juan, Puerto Rico. Forecast skill was highly variable across teams and targets. While numerous forecasts showed high skill for midseason situational awareness, early season skill was low, and skill was generally lowest for high incidence seasons, those for which forecasts would be most valuable. A comparison of modeling approaches revealed that average forecast skill was lower for models including biologically meaningful data and mechanisms and that both multimodel and multiteam ensemble forecasts consistently outperformed individual model forecasts. Leveraging these insights, data, and the forecasting framework will be critical to improve forecast skill and the application of forecasts in real time for epidemic preparedness and response. Moreover, key components of this project-integration with public health needs, a common forecasting framework, shared and standardized data, and open participation-can help advance infectious disease forecasting beyond dengue.
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Texto completo: 1 Colección: 01-internacional Banco de datos: MEDLINE Asunto principal: Métodos Epidemiológicos / Dengue Tipo de estudio: Incidence_studies / Prognostic_studies / Risk_factors_studies Límite: Humans País/Región como asunto: America do sul / Caribe / Peru / Puerto rico Idioma: En Revista: Proc Natl Acad Sci U S A Año: 2019 Tipo del documento: Article

Texto completo: 1 Colección: 01-internacional Banco de datos: MEDLINE Asunto principal: Métodos Epidemiológicos / Dengue Tipo de estudio: Incidence_studies / Prognostic_studies / Risk_factors_studies Límite: Humans País/Región como asunto: America do sul / Caribe / Peru / Puerto rico Idioma: En Revista: Proc Natl Acad Sci U S A Año: 2019 Tipo del documento: Article