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Benchmarked approaches for reconstruction of in vitro cell lineages and in silico models of C. elegans and M. musculus developmental trees.
Gong, Wuming; Granados, Alejandro A; Hu, Jingyuan; Jones, Matthew G; Raz, Ofir; Salvador-Martínez, Irepan; Zhang, Hanrui; Chow, Ke-Huan K; Kwak, Il-Youp; Retkute, Renata; Prusokiene, Alisa; Prusokas, Augustinas; Khodaverdian, Alex; Zhang, Richard; Rao, Suhas; Wang, Robert; Rennert, Phil; Saipradeep, Vangala G; Sivadasan, Naveen; Rao, Aditya; Joseph, Thomas; Srinivasan, Rajgopal; Peng, Jiajie; Han, Lu; Shang, Xuequn; Garry, Daniel J; Yu, Thomas; Chung, Verena; Mason, Michael; Liu, Zhandong; Guan, Yuanfang; Yosef, Nir; Shendure, Jay; Telford, Maximilian J; Shapiro, Ehud; Elowitz, Michael B; Meyer, Pablo.
Afiliación
  • Gong W; Lillehei Heart Institute, University of Minnesota, 2231 6th St S.E, 4-165 CCRB, Minneapolis, MN 55114, USA.
  • Granados AA; California Institute of Technology, Pasadena, CA 91125, USA.
  • Hu J; Program in Quantitative and Computational Biosciences, Baylor College of Medicine, Houston, TX 77030, USA.
  • Jones MG; Department of Electrical Engineering & Computer Science, University of California, Berkeley, Berkeley, CA, USA; Integrative Program of Quantitative Biology, University of California, San Francisco, San Francisco, CA, USA.
  • Raz O; Department of Computer Science and Applied Mathematics, Weizmann Institute of Science, Rehovot 761001, Israel.
  • Salvador-Martínez I; Centre for Life's Origins and Evolution, Department of Genetics, Evolution and Environment, University College London, Gower Street, London WC1E 6BT, UK.
  • Zhang H; Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, MI 48109, USA.
  • Chow KK; California Institute of Technology, Pasadena, CA 91125, USA.
  • Kwak IY; Department of Applied Statistics, College of Business & Economics, Chung-Ang University, 84, Heukseok-ro, Dongjak-gu, Seoul, Republic of Korea.
  • Retkute R; Department of Plant Sciences, University of Cambridge, Downing Street, Cambridge CB2 3EA, UK.
  • Prusokiene A; School of Natural and Environmental Sciences, Newcastle University, Newcastle NE1 7RU, UK.
  • Prusokas A; Department of Life Sciences, Imperial College London, London SW7 2AZ, UK.
  • Khodaverdian A; Department of Electrical Engineering & Computer Science, University of California, Berkeley, Berkeley, CA, USA.
  • Zhang R; Department of Electrical Engineering & Computer Science, University of California, Berkeley, Berkeley, CA, USA.
  • Rao S; Department of Electrical Engineering & Computer Science, University of California, Berkeley, Berkeley, CA, USA.
  • Wang R; Department of Electrical Engineering & Computer Science, University of California, Berkeley, Berkeley, CA, USA.
  • Rennert P; EC Wise Inc., 1299 4th St #505, San Rafael, CA 94901, USA.
  • Saipradeep VG; TCS Research and Innovation, Tata Consultancy Services, Hyderabad 500019, India.
  • Sivadasan N; TCS Research and Innovation, Tata Consultancy Services, Hyderabad 500019, India.
  • Rao A; TCS Research and Innovation, Tata Consultancy Services, Hyderabad 500019, India.
  • Joseph T; TCS Research and Innovation, Tata Consultancy Services, Hyderabad 500019, India.
  • Srinivasan R; TCS Research and Innovation, Tata Consultancy Services, Hyderabad 500019, India.
  • Peng J; School of Computer Science, Northwestern Polytechnical University, Xi'an, China.
  • Han L; School of Computer Science, Northwestern Polytechnical University, Xi'an, China.
  • Shang X; School of Computer Science, Northwestern Polytechnical University, Xi'an, China.
  • Garry DJ; Lillehei Heart Institute, University of Minnesota, 2231 6th St S.E, 4-165 CCRB, Minneapolis, MN 55114, USA.
  • Yu T; Sage Bionetworks, 2901 3rd Ave #330, Seattle, WA 98121, USA.
  • Chung V; Sage Bionetworks, 2901 3rd Ave #330, Seattle, WA 98121, USA.
  • Mason M; Sage Bionetworks, 2901 3rd Ave #330, Seattle, WA 98121, USA.
  • Liu Z; Program in Quantitative and Computational Biosciences, Baylor College of Medicine, Houston, TX 77030, USA.
  • Guan Y; Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, MI 48109, USA.
  • Yosef N; Department of Electrical Engineering & Computer Science, University of California, Berkeley, Berkeley, CA, USA.
  • Shendure J; Department of Genome Sciences, University of Washington, Seattle, WA 98195, USA; Allen Discovery Center for Cell Lineage Tracing, Seattle, WA, USA; Brotman Baty Institute for Precision Medicine, Seattle, WA, USA; Howard Hughes Medical Institute, Seattle, WA, USA.
  • Telford MJ; Centre for Life's Origins and Evolution, Department of Genetics, Evolution and Environment, University College London, Gower Street, London WC1E 6BT, UK.
  • Shapiro E; Department of Computer Science and Applied Mathematics, Weizmann Institute of Science, Rehovot 761001, Israel.
  • Elowitz MB; California Institute of Technology, Pasadena, CA 91125, USA.
  • Meyer P; T.J. Watson Research Center, IBM, Healthcare & Life Sciences, 1101 Kitchawan Rd 10598, Yorktown Heights, NY 10598, USA. Electronic address: pmeyerr@us.ibm.com.
Cell Syst ; 12(8): 810-826.e4, 2021 08 18.
Article en En | MEDLINE | ID: mdl-34146472
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Texto completo: 1 Colección: 01-internacional Banco de datos: MEDLINE Asunto principal: Caenorhabditis elegans / Benchmarking Límite: Animals Idioma: En Revista: Cell Syst Año: 2021 Tipo del documento: Article País de afiliación: Estados Unidos
Texto completo
Imprimir
XML
PubMed Links
Buscar en Google

Texto completo: 1 Colección: 01-internacional Banco de datos: MEDLINE Asunto principal: Caenorhabditis elegans / Benchmarking Límite: Animals Idioma: En Revista: Cell Syst Año: 2021 Tipo del documento: Article País de afiliación: Estados Unidos