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Establishing community reference samples, data and call sets for benchmarking cancer mutation detection using whole-genome sequencing.
Fang, Li Tai; Zhu, Bin; Zhao, Yongmei; Chen, Wanqiu; Yang, Zhaowei; Kerrigan, Liz; Langenbach, Kurt; de Mars, Maryellen; Lu, Charles; Idler, Kenneth; Jacob, Howard; Zheng, Yuanting; Ren, Luyao; Yu, Ying; Jaeger, Erich; Schroth, Gary P; Abaan, Ogan D; Talsania, Keyur; Lack, Justin; Shen, Tsai-Wei; Chen, Zhong; Stanbouly, Seta; Tran, Bao; Shetty, Jyoti; Kriga, Yuliya; Meerzaman, Daoud; Nguyen, Cu; Petitjean, Virginie; Sultan, Marc; Cam, Margaret; Mehta, Monika; Hung, Tiffany; Peters, Eric; Kalamegham, Rasika; Sahraeian, Sayed Mohammad Ebrahim; Mohiyuddin, Marghoob; Guo, Yunfei; Yao, Lijing; Song, Lei; Lam, Hugo Y K; Drabek, Jiri; Vojta, Petr; Maestro, Roberta; Gasparotto, Daniela; Kõks, Sulev; Reimann, Ene; Scherer, Andreas; Nordlund, Jessica; Liljedahl, Ulrika; Jensen, Roderick V.
Afiliación
  • Fang LT; Bioinformatics Research & Early Development, Roche Sequencing Solutions Inc., Belmont, CA, USA.
  • Zhu B; Division of Cancer Epidemiology and Genetics, National Cancer Institute, National Institutes of Health, Bethesda, MD, USA.
  • Zhao Y; Advanced Biomedical and Computational Sciences, Biomedical Informatics and Data Science Directorate, Frederick National Laboratory for Cancer Research, Frederick, MD, USA.
  • Chen W; Center for Genomics, Loma Linda University School of Medicine, Loma Linda, CA, USA.
  • Yang Z; Center for Genomics, Loma Linda University School of Medicine, Loma Linda, CA, USA.
  • Kerrigan L; Department of Allergy and Clinical Immunology, State Key Laboratory of Respiratory Disease, National Clinical Research Center for Respiratory Disease, Guangzhou Institute of Respiratory Health, First Affiliated Hospital of Guangzhou Medical University, Guangzhou, China.
  • Langenbach K; ATCC (American Type Culture Collection), Manassas, VA, USA.
  • de Mars M; ATCC (American Type Culture Collection), Manassas, VA, USA.
  • Lu C; ATCC (American Type Culture Collection), Manassas, VA, USA.
  • Idler K; Computational Genomics, Genomics Research Center (GRC), AbbVie, North Chicago, IL, USA.
  • Jacob H; Computational Genomics, Genomics Research Center (GRC), AbbVie, North Chicago, IL, USA.
  • Zheng Y; Computational Genomics, Genomics Research Center (GRC), AbbVie, North Chicago, IL, USA.
  • Ren L; State Key Laboratory of Genetic Engineering, Human Phenome Institute, School of Life Sciences and Shanghai Cancer Center, Fudan University, Shanghai, China.
  • Yu Y; State Key Laboratory of Genetic Engineering, Human Phenome Institute, School of Life Sciences and Shanghai Cancer Center, Fudan University, Shanghai, China.
  • Jaeger E; State Key Laboratory of Genetic Engineering, Human Phenome Institute, School of Life Sciences and Shanghai Cancer Center, Fudan University, Shanghai, China.
  • Schroth GP; Illumina Inc., Foster City, CA, USA.
  • Abaan OD; Illumina Inc., Foster City, CA, USA.
  • Talsania K; Illumina Inc., Foster City, CA, USA.
  • Lack J; Advanced Biomedical and Computational Sciences, Biomedical Informatics and Data Science Directorate, Frederick National Laboratory for Cancer Research, Frederick, MD, USA.
  • Shen TW; Advanced Biomedical and Computational Sciences, Biomedical Informatics and Data Science Directorate, Frederick National Laboratory for Cancer Research, Frederick, MD, USA.
  • Chen Z; Advanced Biomedical and Computational Sciences, Biomedical Informatics and Data Science Directorate, Frederick National Laboratory for Cancer Research, Frederick, MD, USA.
  • Stanbouly S; Center for Genomics, Loma Linda University School of Medicine, Loma Linda, CA, USA.
  • Tran B; Center for Genomics, Loma Linda University School of Medicine, Loma Linda, CA, USA.
  • Shetty J; Sequencing Facility, Cancer Research Technology Program, Frederick National Laboratory for Cancer Research, Frederick, MD, USA.
  • Kriga Y; Sequencing Facility, Cancer Research Technology Program, Frederick National Laboratory for Cancer Research, Frederick, MD, USA.
  • Meerzaman D; Sequencing Facility, Cancer Research Technology Program, Frederick National Laboratory for Cancer Research, Frederick, MD, USA.
  • Nguyen C; Computational Genomics and Bioinformatics Branch, Center for Biomedical Informatics and Information Technology (CBIIT), National Cancer Institute, Rockville, MD, USA.
  • Petitjean V; Computational Genomics and Bioinformatics Branch, Center for Biomedical Informatics and Information Technology (CBIIT), National Cancer Institute, Rockville, MD, USA.
  • Sultan M; Biomarker Development, Novartis Institutes for Biomedical Research, Basel, Switzerland.
  • Cam M; Biomarker Development, Novartis Institutes for Biomedical Research, Basel, Switzerland.
  • Mehta M; CCR Collaborative Bioinformatics Resource (CCBR), Office of Science and Technology Resources, Center for Cancer Research, Bethesda, MD, USA.
  • Hung T; Sequencing Facility, Cancer Research Technology Program, Frederick National Laboratory for Cancer Research, Frederick, MD, USA.
  • Peters E; Genentech, a member of the Roche group, South San Francisco, CA, USA.
  • Kalamegham R; Genentech, a member of the Roche group, South San Francisco, CA, USA.
  • Sahraeian SME; Genentech, a member of the Roche group, South San Francisco, CA, USA.
  • Mohiyuddin M; Bioinformatics Research & Early Development, Roche Sequencing Solutions Inc., Belmont, CA, USA.
  • Guo Y; Bioinformatics Research & Early Development, Roche Sequencing Solutions Inc., Belmont, CA, USA.
  • Yao L; Bioinformatics Research & Early Development, Roche Sequencing Solutions Inc., Belmont, CA, USA.
  • Song L; Bioinformatics Research & Early Development, Roche Sequencing Solutions Inc., Belmont, CA, USA.
  • Lam HYK; Division of Cancer Epidemiology and Genetics, National Cancer Institute, National Institutes of Health, Bethesda, MD, USA.
  • Drabek J; Bioinformatics Research & Early Development, Roche Sequencing Solutions Inc., Belmont, CA, USA.
  • Vojta P; IMTM, Faculty of Medicine and Dentistry, Palacky University, Olomouc, Czech Republic.
  • Maestro R; European Infrastructure for Translational Medicine, Amsterdam, the Netherlands.
  • Gasparotto D; IMTM, Faculty of Medicine and Dentistry, Palacky University, Olomouc, Czech Republic.
  • Kõks S; European Infrastructure for Translational Medicine, Amsterdam, the Netherlands.
  • Reimann E; European Infrastructure for Translational Medicine, Amsterdam, the Netherlands.
  • Scherer A; Centro di Riferimento Oncologico di Aviano (CRO) IRCCS, National Cancer Institute, Unit of Oncogenetics and Functional Oncogenomics, Aviano, Italy.
  • Nordlund J; European Infrastructure for Translational Medicine, Amsterdam, the Netherlands.
  • Liljedahl U; Centro di Riferimento Oncologico di Aviano (CRO) IRCCS, National Cancer Institute, Unit of Oncogenetics and Functional Oncogenomics, Aviano, Italy.
  • Jensen RV; European Infrastructure for Translational Medicine, Amsterdam, the Netherlands.
Nat Biotechnol ; 39(9): 1151-1160, 2021 09.
Article en En | MEDLINE | ID: mdl-34504347
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Texto completo: 1 Colección: 01-internacional Banco de datos: MEDLINE Asunto principal: Neoplasias de la Mama / Análisis Mutacional de ADN / Benchmarking / Secuenciación de Nucleótidos de Alto Rendimiento / Secuenciación Completa del Genoma Tipo de estudio: Diagnostic_studies Límite: Humans Idioma: En Revista: Nat Biotechnol Asunto de la revista: BIOTECNOLOGIA Año: 2021 Tipo del documento: Article País de afiliación: Estados Unidos
Texto completo
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Texto completo: 1 Colección: 01-internacional Banco de datos: MEDLINE Asunto principal: Neoplasias de la Mama / Análisis Mutacional de ADN / Benchmarking / Secuenciación de Nucleótidos de Alto Rendimiento / Secuenciación Completa del Genoma Tipo de estudio: Diagnostic_studies Límite: Humans Idioma: En Revista: Nat Biotechnol Asunto de la revista: BIOTECNOLOGIA Año: 2021 Tipo del documento: Article País de afiliación: Estados Unidos