COVID-profiler: a webserver for the analysis of SARS-CoV-2 sequencing data.
BMC Bioinformatics
; 23(1): 137, 2022 Apr 15.
Article
en En
| MEDLINE
| ID: mdl-35428185
ABSTRACT
BACKGROUND:
SARS-CoV-2 virus sequencing has been applied to track the COVID-19 pandemic spread and assist the development of PCR-based diagnostics, serological assays, and vaccines. With sequencing becoming routine globally, bioinformatic tools are needed to assist in the robust processing of resulting genomic data.RESULTS:
We developed a web-based bioinformatic pipeline ("COVID-Profiler") that inputs raw or assembled sequencing data, displays raw alignments for quality control, annotates mutations found and performs phylogenetic analysis. The pipeline software can be applied to other (re-) emerging pathogens.CONCLUSIONS:
The webserver is available at http//genomics.lshtm.ac.uk/ . The source code is available at https//github.com/jodyphelan/covid-profiler .Palabras clave
Texto completo:
1
Colección:
01-internacional
Banco de datos:
MEDLINE
Asunto principal:
SARS-CoV-2
/
COVID-19
Límite:
Humans
Idioma:
En
Revista:
BMC Bioinformatics
Asunto de la revista:
INFORMATICA MEDICA
Año:
2022
Tipo del documento:
Article
País de afiliación:
Reino Unido