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Draft genome data of Prunus avium cv 'Stella'.
Sharpe, Richard M; Killian, Benjamin; Koepke, Tyson; Ghogare, Rishikesh; Oraguzie, Nnadozie; Whiting, Matthew; Meisel, Lee A; Silva, Herman; Dhingra, Amit.
Afiliación
  • Sharpe RM; Department of Horticulture, Washington State University, Pullman WA 99164, United States.
  • Killian B; Department of Horticulture, Washington State University, Pullman WA 99164, United States.
  • Koepke T; Department of Agriculture, African Christian University, Lusaka H985+XQ3, Zambia.
  • Ghogare R; Department of Horticulture, Washington State University, Pullman WA 99164, United States.
  • Oraguzie N; Department of Horticulture, Washington State University, Pullman WA 99164, United States.
  • Whiting M; Irrigated Agriculture Research and Extension Center, Washington State University, Prosser, WA 99350, United States.
  • Meisel LA; Irrigated Agriculture Research and Extension Center, Washington State University, Prosser, WA 99350, United States.
  • Silva H; Instituto de Nutrición y Tecnología de Los Alimentos (INTA), Universidad de Chile, El Libano 5524, 7830490, Macul, Santiago, Chile.
  • Dhingra A; Facultad de Ciencias Agronómicas, Laboratorio de Genómica Funcional & Bioinformática, Universidad de Chile, Av. Santa Rosa 11315, 8820808, La Pintana, Santiago, Chile.
Data Brief ; 45: 108611, 2022 Dec.
Article en En | MEDLINE | ID: mdl-36164303
ABSTRACT
Prunus avium cv. 'Stella' total cellular DNA was isolated from emerging leaf tissue and sequenced using Roche 454 GS FLX Titanium, and Illumina HiSeq 2000 High Throughput Sequencing (HTS) technologies. Sequence data were filtered and trimmed to retain nucleotides corresponding to Phred score 30, and assembled with CLC Genomics Workbench v.6.0.1. A total of 107,531 contigs were assembled with 185 scaffolds with a maximum length of 132,753 nucleotides and an N50 value of 4,601. The average depth of coverage was 135.87 nucleotides with a median depth of coverage equal to 31.50 nucleotides. The draft 'Stella' genome presented here covers 77.8% of the estimated 352.9Mb P. avium genome and is expected to facilitate genetics and genomics research focused on identifying genes and quantitative trait loci (QTL) underlying important agronomic and consumer traits.
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Texto completo: 1 Colección: 01-internacional Banco de datos: MEDLINE Tipo de estudio: Prognostic_studies Idioma: En Revista: Data Brief Año: 2022 Tipo del documento: Article País de afiliación: Estados Unidos
Texto completo
Imprimir
XML
PubMed Links
Buscar en Google

Texto completo: 1 Colección: 01-internacional Banco de datos: MEDLINE Tipo de estudio: Prognostic_studies Idioma: En Revista: Data Brief Año: 2022 Tipo del documento: Article País de afiliación: Estados Unidos