Fast-track adaptive laboratory evolution of Cupriavidus necator H16 with divalent metal cations.

Microbial strain improvement through adaptive laboratory evolution (ALE) has been a key strategy in biotechnology for enhancing desired phenotypic traits. In this Biotech Method paper, we present an accelerated ALE (aALE) workflow and its successful implementation in evolving Cupriavidus necator H16 for enhanced tolerance toward elevated glycerol concentrations. The method involves the deliberate induction of genetic diversity through controlled exposure to divalent metal cations, enabling the rapid identification of improved variants. Through this approach, we observed the emergence of robust variants capable of growing in high glycerol concentration environments, demonstrating the efficacy of our aALE workflow. When cultivated in 10% v/v glycerol, the adapted variant Mn-C2-B11, selected through aALE, achieved a final OD600 value of 56.0 and a dry cell weight of 15.2 g L-1, compared to the wild type (WT) strain's final OD600 of 39.1 and dry cell weight of 8.4 g L-1. At an even higher glycerol concentration of 15% v/v, Mn-C2-B11 reached a final OD600 of 48.9 and a dry cell weight of 12.7 g L-1, in contrast to the WT strain's final OD600 of 9.0 and dry cell weight of 3.1 g L-1. Higher glycerol consumption by Mn-C2-B11 was also confirmed by high-performance liquid chromatography (HPLC) analysis. This adapted variant consumed 34.5 times more glycerol compared to the WT strain at 10% v/v glycerol. Our method offers several advantages over other reported ALE approaches, including its independence from genetically modified strains, specialized genetic tools, and potentially carcinogenic DNA-modifying agents. By utilizing divalent metal cations as mutagens, we offer a safer, more efficient, and cost-effective alternative for expansion of genetic diversity. With its ability to foster rapid microbial evolution, aALE serves as a valuable addition to the ALE toolbox, holding significant promise for the advancement of microbial strain engineering and bioprocess optimization.

Not only phosphorus: dauciform roots can also influence aboveground biomass through root morphological traits and metal cation concentrations.

Background: Phosphorus in the soil is mostly too insoluble for plants to utilize, resulting in inhibited aboveground biomass, while Carex can maintain their aboveground biomass through the presence of dauciform roots. However, dauciform roots lead to both morphological and physiological changes in the root system, making their primary mechanism unclear. Methods: A greenhouse experiment was conducted on three Carex species, in which Al-P, Ca-P, Fe-P, and K-P were employed as sole phosphorus sources. The plants were harvested and assessed after 30, 60 and 90 days. Results: (1) The density of dauciform roots was positively correlated with root length and specific root length, positively influencing aboveground biomass at all three stages. (2) The aboveground phosphorus concentration showed a negative correlation with both dauciform root density and aboveground biomass in the first two stages, which became positive in the third stage. (3) Aboveground biomass correlated negatively with the aboveground Al concentration, and positively with Ca and Fe concentration (except Al-P). (4) Root morphological traits emerged as critical factors in dauciform roots' promotion of aboveground biomass accumulation. Conclusion: Despite the difference among insoluble phosphorus, dauciform roots have a contributing effect on aboveground growth status over time, mainly by regulating root morphological traits. This study contributes to our understanding of short-term variation in dauciform roots and their regulatory mechanisms that enhance Carex aboveground biomass under low available phosphorus conditions.

Quantitative Analysis and Manipulation of Alkali Metal Cations at the Cathode Surface in Membrane Electrode Assembly Electrolyzers for CO2 Reduction Reactions.

The stable operation of the CO2 reduction reaction (CO2RR) in membrane electrode assembly (MEA) electrolyzers is known to be hindered by the accumulation of bicarbonate salt, which are derived from alkali metal cations in anolytes, on the cathode side. In this study, we conducted a quantitative evaluation of the correlation between the CO2RR activity and the transported alkali metal cations in MEA electrolyzers. As a result, although the presence of transported alkali metal cations on the cathode surface significantly contributes to the generation of C2+ compounds, the rate of K+ ion transport did not match the selectivity of C2+, suggesting that a continuous supply of high amount of K+ to the cathode surface is not required for C2+ formation. Based on these findings, we achieved a faradaic efficiency (FE) and a partial current density for C2+ of 77% and 230 mA cm-2, respectively, even after switching the anode solution from 0.1 M KHCO3 to a dilute K+ solution (<7 mM). These values were almost identical to those when 0.1 M KHCO3 was continuously supplied. Based on this insight, we successfully improved the durability of the system against salt precipitation by intermittently supplying concentrated KHCO3, compared with the continuous supply.

An N-terminal acidic ß-sheet domain is responsible for the metal-accumulation properties of amyloid-ß protofibrils: a molecular dynamics study.

The influence of metal ions on the structure of amyloid- ß (Aß) protofibril models was studied through molecular dynamics to explore the molecular mechanisms underlying metal-induced Aß aggregation relevant in Alzheimer's disease (AD). The models included 36-, 48-, and 188-mers of the Aß42 sequence and two disease-modifying variants. Primary structural effects were observed at the N-terminal domain, as it became susceptible to the presence of cations. Specially when ß-sheets predominate, this motif orients N-terminal acidic residues toward one single face of the ß-sheet, resulting in the formation of an acidic region that attracts cations from the media and promotes the folding of the N-terminal region, with implications in amyloid aggregation. The molecular phenotype of the protofibril models based on Aß variants shows that the AD-causative D7N mutation promotes the formation of N-terminal ß-sheets and accumulates more Zn2+, in contrast to the non-amyloidogenic rodent sequence that hinders the ß-sheets and is more selective for Na+ over Zn2+ cations. It is proposed that forming an acidic ß-sheet domain and accumulating cations is a plausible molecular mechanism connecting the elevated affinity and concentration of metals in Aß fibrils to their high content of ß-sheet structure at the N-terminal sequence.

Highly Efficient Acidic Electrosynthesis of Hydrogen Peroxide at Industrial-Level Current Densities Promoted by Alkali Metal Cations.

Acidic H2O2 synthesis through electrocatalytic 2e- oxygen reduction presents a sustainable alternative to the energy-intensive anthraquinone oxidation technology. Nevertheless, acidic H2O2 electrosynthesis suffers from low H2O2 Faradaic efficiencies primarily due to the competing reactions of 4e- oxygen reduction to H2O and hydrogen evolution in environments with high H+ concentrations. Here, we demonstrate the significant effect of alkali metal cations, acting as competing ions with H+, in promoting acidic H2O2 electrosynthesis at industrial-level currents, resulting in an effective current densities of 50-421 mA cm-2 with 84-100 % Faradaic efficiency and a production rate of 856-7842 µmol cm-2 h-1 that far exceeds the performance observed in pure acidic electrolytes or low-current electrolysis. Finite-element simulations indicate that high interfacial pH near the electrode surface formed at high currents is crucial for activating the promotional effect of K+. In situ attenuated total reflection Fourier transform infrared spectroscopy and ab initio molecular dynamics simulations reveal the central role of alkali metal cations in stabilizing the key *OOH intermediate to suppress 4e- oxygen reduction through interacting with coordinated H2O.

Zigzag boron nitride nanotube functionalization as a sensor for the recognition of group IIA (Mg2+, Ca2+) metal ions, quasi-metal (Si2+, Ge2+) ions, and transition metal (Cu2+, Zn2+) ions: a computational study.

CONTEXT: Boron nitride nanotubes (BNNTs) provide an exceptional and sophisticated platform for detecting metal ions with high surface area and remarkable chemical stability. Metal cations tend to bind to the surface of BNNTs, which leads to significant changes in the electrical properties of nanotubes. BNNT-based metal ion sensors have shown promising results in various applications, including water quality monitoring, biomedical research, industrial quality control, and environmental monitoring. In the present study, we have explored the electronic sensitivity of the BNNT to metal ions (Si2+, Ge2+, Cu2+, Zn2+, Mg2+, and Ca2+). The interaction between the ions with the pristine BNNT is performed in the solution phase. The results show that ion adsorption on the nanotube surface is exothermic and favorable. The density of states calculation is presented to investigate the electronic properties of the nanotube during the adsorption process. The results display that an increase in the electrical conductivity of the complexes accompanies the reduction in the energy gap. Based on the obtained data, the Si2+ and Ge2+ cations adsorbed on the BNNT with satisfactory Eg changes (%ΔE) can be promising candidates for better sensing ability. METHOD: All calculations are conducted within the density functional theory (DFT) using the ωB97XD functional and 6-31G(d,p) basis set. The present approach incorporates the utilization of empirical atom-atom dispersion in conjunction with long-range correction. The calculations are performed using the quantum chemistry package GAMESS, and the obtained results are visualized by employing the GaussView 6.0.16 program.

Efficient removal of heavy metals in water utilizing facile cross-link conjugated linoleic acid micelles.

Micellar-enhanced ultrafiltration (MEUF) technology is an effective method to treat low-concentration heavy metal wastewater. However, the leakage of surfactants in the ultrafiltration (UF) process will inevitably cause secondary pollution. In this study, a biosurfactant of conjugated linoleic acid (CLA) with conjugated double bonds was selected to bind its micelles by simple thermal crosslinking to obtain morphologically stable stearic acid (SA) nanoparticles. The pure SA nanoparticles were obtained by repeated dialysis. The stability of the SA nanoparticles was verified by comparing the particle size distribution and solubility of the materials before and after crosslinking at different pH levels. The effectiveness of SA nanoparticle-enhanced UF in removing heavy metals was verified by exploring the adsorption performance of SA nanoparticles. The dialysis device was used to simplify the UF device, wherein SA nanoparticles were assessed as adsorbents for the elimination of Cu2+, Pb2+, and Cd2+ ions from aqueous solutions under diverse process parameters, including pH, contact time, metal ion concentration, and coexisting ions. The findings indicate that the SA nanoparticles have no evidence of secondary contamination in UF and exhibit compatibility with a broad pH range and coexisting ions. The maximum adsorption capacities for Cu2+, Pb2+, and Cd2+ were determined to be 152.77, 403.56, and 271.46 mg/g, respectively.

Large-area, size-controlled and transferable graphene oxide-metal films for humidity sensor.

The lack of low-cost methods to synthesize large-area graphene-based materials is still an important factor that limits the practical application of graphene devices. Herein, we present a facile method for producing large-area graphene oxide-metal (GO-M) films, which are size controllable and transferable. The sensor constructed using the GO-M film exhibited humidity sensitivity while being unaffected by pressure. The relationship between the sensor's resistance and relative humidity followed an exponential trend. The GO-Mg sensor was the most sensitive among all the tested sensors. The facile synthesis of GO-M films will accelerate the widespread utilization of graphene-based materials.

Recent Developments in Colorimetric and Fluorometric Detection Methods of Trivalent Metal Cations (Al3+, Fe3+ and Cr3+) Using Schiff Base Probes: At a Glance.

This review basically concerned with the application of different Schiff bases (SB) based fluorimetric (turn-off and turn-on) and colorimetric chemosensors for the detection of heavy metal cations particularly Al(III), Fe(III), and Cr(III) ions. Chemosensors based on Schiff bases have exhibited outstanding performance in the detection of different metal cations due to their facile and in-expensive synthesis, and their excellent coordination ability with almost all metal cations and stabilize them in different oxidation states. Moreover, Schiff bases have also been used as antifungal, anticancer, analgesic, anti-inflammatory, antibacterial, antiviral, antioxidant, and antimalarial etc. The Schiff base also can be used as an intermediate for the formation of various heterocyclic compounds. In this review, we have focused on the research work performed on the development of chemosensors (colorimetric and fluorometric) for rapid detection of trivalent metal cations particularly Al(III), Fe(III), and Cr(III) ions using Schiff base as a ligand during 2020-2022.

Ions-Induced Alginate Gelation According to Elemental Analysis and a Combinatorial Approach.

This study considers the potential of elemental analysis of polysaccharide ionotropic gels in elucidating the junction zones for different divalent cations. The developed algorithm ensures the correct separation of contributions from physically adsorbed and structure-forming ionic compounds, with the obtained results scaled to alginate C12 block. Possible versions of chain association into dimers and their subsequent integration into flat junction zones were analyzed within the framework of the "egg-box" model. The application of combinatorial analysis made it possible to derive theoretical relations to find the probability of various types of egg-box cell occurrences for alginate chains with arbitrary monomeric units ratio µ = M/G, which makes it possible to compare experimental data for alginates of different origins. Based on literature data and obtained chemical formulas, the possible correspondence of concrete biopolymer cells to those most preferable for filling by alkaline earth cations was established. The identified features of elemental composition suggest the formation of composite hydrated complexes with the participation of transition metal cations. The possibility of quantitatively assessing ordered secondary structures formed due to the physical sorption of ions and molecules from environment, correlating with the sorption capabilities of Me2+ alginate, was established.

Fluorescent homooxacalixarenes: recent applications in supramolecular systems.

This review covers recent advances (from 2006 to date) in supramolecular systems based on fluorescent homooxacalixarenes, namely hexahomotrioxacalix[3]arenes, dihomooxacalix[4]arenes and tetrahomodioxacalix[4]arenes, focusing on fluorescence sensing using their intrinsic fluorescence (built-in mesitol-like groups) or the extrinsic fluorescence of organic fluorophores, either covalently linked to the calixarenes or forming supramolecular complexes with them. Sensing applications of ions, ion pairs and neutral molecules are discussed, as well as the potential measurement of temperature based on thermally activated delayed fluorescence.

Strategies for Improving Selectivity and Sensitivity of Schiff Base Fluorescent Chemosensors for Toxic and Heavy Metals.

Toxic cations, including heavy metals, pose significant environmental and health risks, necessitating the development of reliable detection methods. This review investigates the techniques and approaches used to strengthen the sensitivity and selectivity of Schiff base fluorescent chemosensors designed specifically to detect toxic and heavy metal cations. The paper explores a range of strategies, including functional group variations, structural modifications, and the integration of nanomaterials or auxiliary receptors, to amplify the efficiency of these chemosensors. By improving selectivity towards targeted cations and achieving heightened sensitivity and detection limits, consequently, these strategies contribute to the advancement of accurate and efficient detection methods while increasing the range of end-use applications. The findings discussed in this review offer valuable insights into the potential of leveraging Schiff base fluorescent chemosensors for the accurate and reliable detection and monitoring of heavy metal cations in various fields, including environmental monitoring, biomedical research, and industrial safety.

Universality of Benzoquinone-based Anodes toward Various Metal Cations in Aqueous Rechargeable Batteries.

The poly(2,5-dihydroxy-1,4-benzoquinone-3,6-methylene) (denoted as PDBM) capable of reversible coordination/uncoordination with both mono- and multivalent cations in aqueous electrolytes is desired to develop safe, sustainable, and cost-effective aqueous rechargeable batteries (ARBs). However, the comprehensive mechanism between the electrochemical performance of PDBM and properties of these metal cations is unclear. Herein, we initially demonstrate the universality of PDBM to reversibly coordinate/uncoordinate with various cations (Na+, Mg2+, Ca2+, Zn2+, Al3+, etc.) with high specific capacities (>200 mA h g-1), high rate capabilities (∼20 C), and long cycling life (5000 cycles). Additionally, an unprecedented ion-coordination mechanism is presented: the monovalent cations prefer to occupy the in-plane sites with respect to the benzene rings of PDBM during the electrochemical reduced process, while the multivalent cations with the larger charge density tend to occupy the out-of-plane sites, which can use more active sites in the PDBM molecule and deliver the higher specific capacities. Meanwhile, the redox potential of PDBM decreases with the decrease in the binding energy between metal cations and PDBM molecules. The universality of PDBM to numerous cations is beneficial to design high-safety, low-cost, and long-lifespan ARBs for large-scale energy storage systems by modulating the aqueous electrolytes.

A Novel Naphthylidene-diimine Chemosensor for Selective Colorimetric and Fluorometric Detection of Al3+ and CN- Ions.

A naphthylidene-diimine L2 was newly designed, and its structure was identified by elemental analysis and spectroscopic methods. The effect of temperature, acid-base and light on enol-keto tautomerism in this Schiff base was evaluated by colorimetry, UV-Vis and fluorescence spectroscopy. Under irradiation 365 nm, L2 emitted yellow, orange and strong green emission in pure, basic and aqueous DMSO media (v/v, 1/1), respectively. Its ionochromic behavior against various cations (Fe3+, Al3+, Cr3+, Cu2+, Co2+, Ni2+, Zn2+, Cd2+, Pb2+, Ba2+ and Ag+) and anions (F-, Cl-, CH3COO-, SO32-, S2O32-, HSO4-, H2PO4-, NO3-, CN-, and OH-) was investigated in aqueous DMSO media (v/v, 1/1) by UV-Vis and fluorescence experiments. Dark yellow color of L2 changed to colorless for Fe3+, Cr3+ and HSO4- ions, and turned to light yellow for Al3+ and Cu2+ ions, and to orange for CN- and OH- ions. According to UV-Vis data, the chemosensor displayed selective recognition towards Fe3+, Al3+, Cu2+, HSO4-, CN- and OH- with a 1:1 stoichiometric ratio. At the excitation wavelength of 365 nm, L2 gave strong yellowish white emission (λem = 445 and 539 nm) in the presence of Al3+, and the intensity increased about 12.5 times. On the other hand, the chemosensor displayed one emission band at 452 nm and 450 nm in the presence of CN- and OH- with 1.9 fold and 2.3 fold fluorescence enhancement, respectively.

pH: A core node of interaction networks among soil organo-mineral fractions.

Mineral-associated organic matter (MAOM) is the largest soil organic carbon (OC) pool with the longest turnover. MAOM is expected to have relatively little sensitivity to climate change due to mineral protection, but its persistence involves several organo-mineral fractions. The uncertainty in the response of specific organo-mineral fractions to climate change hampers the reliability of predictions of MAOM preservation in the future. Here, we applied a sequential chemical fractionation method integrated with network analysis to investigate MAOM stabilization mechanisms across five alpine ecosystems: alpine desert, alpine steppe, alpine meadow, alpine wetland, and alpine forest. Hierarchical cluster analysis revealed grouping of seven extractable OM fractions in MAOM into three OM clusters: a cluster with weak bondings consisting of water-soluble OM (WSOM) and weakly adsorbed fractions (2.1-21.3% of total OC); a cluster with metal-bound complexes comprising Ca-OM complexes and Fe/Al-OM complexes (3.8-12.2% of total OC); and a cluster with strong bonding composed of Al oxyhydroxides, carbonates and Fe oxyhydroxides (12.2-33.5% of total OC). The relative percentages of OM from soils of the five ecosystems in the three clusters exhibited distinct pH dependence patterns. With the increase in pH, the cluster with weak bondings decreased, and that with strong bondings increased, while the one with metal-bound complexes showed a maximum at weakly acidic pH. Organo-mineral fractions and metal cations in MAOM constructed a complex network with pH as the central node. Results suggest that precipitation does not only alter vegetation type and microbial biomass but also regulate soil pH, which is balanced by specific metal cations, thus resulting in particular pH preference of specific OM clusters. These findings demonstrate that soil pH plays a central role in unveiling MAOM dynamics and can serve as a good predictor of soil organo-mineral fractions across alpine ecosystems.

Adsorption Performance of Heavy Metal Ions under Multifactorial Conditions by Synthesized Organic-Inorganic Hybrid Membranes.

A series of hybridized charged membrane materials containing carboxyl and silyl groups were prepared via the epoxy ring-opening reaction and sol-gel methods using 3-glycidoxypropyltrimethoxysilane (WD-60) and polyethylene glycol 6000 (PEG-6000) as raw materials and DMF as a solvent. Scanning electron microscopy (SEM), fourier transform infrared spectroscopy (FTIR), and thermal gravimetric analyzer/differential scanning calorimetry (TGA/DSC) analysis showed that the heat resistance of the polymerized materials could reach over 300 °C after hybridization. A comparison of the results of heavy metal lead and copper ions' adsorption tests on the materials at different times, temperatures, pHs, and concentrations showed that the hybridized membrane materials have good adsorption effects on heavy metals and better adsorption effects on lead ions. The maximum capacity obtained from optimized conditions for Cu2+ and Pb2+ ions were 0.331 and 5.012 mmol/g. The experiments proved that this material is indeed a new environmentally friendly, energy-saving, high-efficiency material. Moreover, their adsorptions for Cu2+ and Pb2+ ions will be evaluated as a model for the separation and recovery of heavy metal ions from wastewater.

Chitosan/carboxymethylcellulose polyelectrolyte complexes (PECs) are an effective material for dye and heavy metal adsorption from water.

Granular macroscopic chitosan/carboxymethylcellulose polyelectrolytic complexes (CHS/CMC macro-PECs) were produced and tested as adsorbents for six pollutants often present in wastewaters: sunset yellow (YS), methylene blue (MB), Congo red (CR) and safranin (S), cadmium (Cd2+) and lead (Pb2+). The optimum adsorption pH values at 25 °C were 3.0, 11.0, 2.0, 9.0, 10.0, and 9.0 for YS, MB, CR, S, Cd2+, and Pb2+, respectively. Kinetic studies indicated that the pseudos-econd order model best represented the adsorption kinetics of YS, MB, CR, and Cd2+, whereas the pseudo-first order model was the most suitable for S and Pb2+ adsorption. The Langmuir, Freundlich, and Redlich-Peterson isotherms were fitted to experimental adsorption data, with the Langmuir model providing the best fit. The maximum adsorption capacity (qmáx) of CHS/CMC macro-PECs for the removal of YS, MB, CR, S, Cd2+, and Pb2+ was 37.81, 36.44, 70.86, 72.50, 75.43, and 74.42 mg/g, respectively (corresponding to 98.91 %, 94.71 %, 85.73 %, 94.66 %, 98.46 %, and 97.14 %). Desorption assays showed that CHS/CMC macro-PECs can be regenerated after adsorbing any of the six pollutants studied, with possibility of reuse. These results provide an accurate quantitative characterization of the adsorption of organic and inorganic pollutants on CHS/CMC macro-PECs, indicating a novel technological applicability of these two inexpensive, easy-to-obtain polysaccharides for water decontamination.

Effects of taurine on metal cations, transthyretin and LRP-1 in a rat model of Alzheimer's disease.

BACKGROUND: Researches on diagnosis and treatment of Alzheimer's disease, the most common type of dementia, are still ongoing. Taurine is frequently used in Alzheimer's disease models due to its protective effects. Metal cation dyshomeostasis is an important etiological factor for Alzheimer's disease. Transthyretin protein is thought to act as a transporter for the Aß protein that accumulates in the brain and is eliminated in the liver and kidneys via the LRP-1 receptor. However, the effect of taurine on this mechanisms is not fully known. METHODS: 30 male rats, aged 28 ± 4 months, were divided into 5 groups (n = 6) as follows: control group, sham group, Aß 1-42 group, taurine group and taurine+Aß 1-42 group. Oral taurine pre-supplementation was given as 1000 mg/kg-body weight/day for 6 weeks to taurine and taurine+Aß 1-42 groups. RESULTS: Plasma copper, heart transthyretin and Aß 1-42, brain and kidney LRP-1 levels were found to be decreased in the Aß 1-42 group. Brain transthyretin was higher in taurine+Aß 1-42 group and brain Aß 1-42 was higher in Aß 1-42 and taurine+Aß 1-42 groups. CONCLUSION: Taurine pre-supplementation maintained cardiac transthyretin levels, decreased cardiac Aß 1-42 levels and increased brain and kidney LRP-1 levels. Taurine may have a potential to be used as a protective agent for aged people at high risk for Alzheimer's disease.

Metals and inorganic molecules in regulating protein and nucleic acid phase separation.

The realization that liquid-liquid phase separation (LLPS) underlies the formation of membraneless compartments in cells has motivated efforts to modulate the condensation process of biomolecules. Increasing evidence shows that metals and inorganic molecules abundantly distributed in cells play important roles in the regulation of biomolecular condensation. Herein, we briefly reviewed the background of biomacromolecular phase separation and summarized the recent research progress on the roles of metals and inorganic molecules in regulating protein and nucleic acid phase separation in vitro and in cells.

Multi-scale modeling of natural organic matter-heavy metal cations interactions: Aggregation and stabilization mechanisms.

Interaction between natural organic matters (NOM) and heavy metal cations in aqueous environment are of great significance for maintaining stability of organic carbon and restraining transport of heavy metal contaminants in (bio)geochemical processes. We systematically explore the aggregation process and complexation between NOM and heavy metal cations (Ag+, Cd2+, Pb2+, Zn2+, Eu3+) under different pH condition by molecular dynamics (MD) simulations, umbrella sampling method, and quantum chemistry calculations. The character of molecular structures NOM-heavy metal complexes and association are quantified. In acidic pH condition, aggregation proceeds via H-bonding and π-π interactions between NOM fragments. In neutral condition, Ag+, Cd2+, Pb2+, and Eu3+ can form inner-sphere complexes with the surface carboxylic groups and therefore reduce intermolecular charge repulsion, eventually leading to NOM aggregation, and it shows that even without direct binding, the outer-sphere adsorbed Zn2+ can also result in the formation of NOM assemble through H-bonding. Consequently, these heavy metals are capable of promoting NOM aggregation regardless of the complexing ways. Complexing free energy calculations characterized the dynamic processes of cations binding to the carboxylic groups of NOM fragment and the related energy landscape. This study provides quantitative insights for understanding the environmental processes of heavy metals and cycle of C in aquatic ecosystem, and contributes to developing environment-friendly strategies for controlling heavy metal contaminants.