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1.
J Dent Educ ; 88(1): 23-29, 2024 Jan.
Article in English | MEDLINE | ID: mdl-37807611

ABSTRACT

OBJECTIVES: Gender equality in the healthcare workforce has been a topic of discourse for many decades. In dental academia, women's representation of enrolled students and faculty has risen consistently since the 1980s. However, women in faculty leadership positions may still be lagging when compared to men. The purpose of this study was to evaluate the number of women who occupy the upper echelons of academic rank and title by analyzing cross-referenced data from the American Dental Association and the American Dental Education Association on women dental school graduates in relation to academic appointments. METHODS: Gender distribution in rank, title, and appointments in the decade from 2011 to 2019, as well as percentage of women graduates over the same period, were collected for descriptive statistics. Multiple linear regression analysis, Cochran Armitage, and chi-square tests were conducted to examine trends over the years and to determine significant differences in overall percentages (p < 0.05). RESULTS: The total women faculty percentages ranged from 36% to 40%. While the lower-level rank of instructor retained a higher representation of women (56%-65%), the higher rank of professor had disproportionately lower women percentages (18%-26%). Graduates, full-time faculty, lower-level academic ranks, and higher-level academic ranks for women followed similar upward trends that were statistically significant (p < 0.05). When comparing the different groups against each other, the annual increase in women DMD/DDS graduate percentage was higher than women full-time faculty (0.28%), instructor rank (0.92%), professor rank (0.50%), and department chair appointments (0.49%). CONCLUSIONS: Our data show that women are still underrepresented at higher academic ranks. However, the upward trends for professors, assistant deans, and program chairs suggest that in recent years, more women faculty may have been encouraged, mentored, or offered higher administrative positions in academic institutions.


Subject(s)
Faculty, Dental , Leadership , Male , United States , Humans , Female , Faculty, Medical , Schools , Dentistry
2.
Rev. ABENO ; 21(1): 1195, dez. 2021.
Article in English | BBO - Dentistry | ID: biblio-1371746

ABSTRACT

This article aimed tobrieflyreport a self-study methodology experience performed in the International Dental Degree Program (IDDP) ina University in Canada. This approach fostered students` self-regulated learning.Due to Covid-19 pandemic theon-sitedentistry school classes were discontinued. Students from the IDDP were allowed to go to on-siteonly to perform pre-clinical activities (supervised by one faculty member at a time). As the 2020 class of the IDDP program was small (2 students), the director of the IDDP Program and faculty members considered that self-study would be an appropriate idea.We noticed that students were successful in self-regulating their learning. Some of the examples for that were: students used note-taking sheets, monitored their comprehension of class lecture material, asked questions etc.The experience with IDDP students showed that the self-study opportunity was a favorable learning environment for the teaching of pre-clinical disciplines (AU).


Este artigo objetivou descrever brevemente uma experiência com a metodologia de estudo autônomo realizada no Programa de Graduação Internacional de Odontologia (IDDP) em uma Universidade no Canadá. Esta abordagem encorajou o aprendizado autorregulado dos estudantes.Devido à pandemia COVID-19 as aulas "on-site" da faculdade de odontologia foram descontinuadas. Os estudantes do programa IDDP eram permitidos frequentar o prédio da faculdade somente para realizar as atividades pré-clínicas (e eram supervisionados por apenas um professor de cada vez). Como a turma de 2020 do programa IDDP era pequena (2 alunos), o diretor do programa e os professores consideraram que o estudo autônomo seria uma ideia apropriada. Percebeu-se que os estudantes tiveram sucesso em autorregular o aprendizado. Como por exemplo: usaram suas anotações, monitoraram a compreensão do material teórico disponibilizado, fizeram perguntas etc.A experiência com os estudantes do programa IDDP mostrouque a oportunidade de estudo autônomo se caracterizou como um ambiente favorável para os professores usarem nas disciplinas pré-clínicas (AU).


Subject(s)
Humans , Male , Female , Students, Dental , Problem-Based Learning/methods , Education, Dental/methods , Evidence-Based Dentistry/methods , Online Social Networking , Canada , Qualitative Research , Faculty
3.
J Med Chem ; 63(20): 11882-11901, 2020 10 22.
Article in English | MEDLINE | ID: mdl-32914979

ABSTRACT

Herein, we report spiropyrimidinetriones (SPTs) incorporating N-linked azole substituents on a benzisoxazole scaffold with improved Gram-positive antibacterial activity relative to previously described analogues. SPTs have an unusual spirocyclic architecture and represent a new antibacterial class of bacterial DNA gyrase and topoisomerase IV inhibitors. They are not cross-resistant to fluoroquinolones and other DNA gyrase/topoisomerase IV inhibitors used clinically. The activity of the SPTs was assessed for DNA gyrase inhibition, and the antibacterial activity across Gram-positive and Gram-negative pathogens with N-linked 1,2,4-triazoles substituted on the 5-position provides the most worthwhile profile. Directed nucleophilic and electrophilic chemistry was developed to vary this 5-position with carbon, nitrogen, or oxygen substituents and explore structure-activity relationships including those around a target binding model. Compounds with favorable pharmacokinetic parameters were identified, and two compounds demonstrated cidality in a mouse model of Staphylococcus aureus infection.


Subject(s)
Anti-Bacterial Agents/pharmacology , DNA Gyrase/metabolism , Staphylococcal Infections/drug therapy , Staphylococcus aureus/drug effects , Topoisomerase II Inhibitors/pharmacology , Animals , Anti-Bacterial Agents/chemical synthesis , Anti-Bacterial Agents/chemistry , Azoles/chemistry , Azoles/pharmacology , Disease Models, Animal , Dose-Response Relationship, Drug , Isoxazoles/chemistry , Isoxazoles/pharmacology , Mice , Microbial Sensitivity Tests , Molecular Structure , Pyrimidinones/chemical synthesis , Pyrimidinones/chemistry , Pyrimidinones/pharmacology , Rats , Rats, Wistar , Spiro Compounds/chemical synthesis , Spiro Compounds/chemistry , Spiro Compounds/pharmacology , Staphylococcal Infections/metabolism , Staphylococcus aureus/metabolism , Structure-Activity Relationship , Topoisomerase II Inhibitors/chemical synthesis , Topoisomerase II Inhibitors/chemistry
4.
Biochemistry ; 59(14): 1428-1441, 2020 04 14.
Article in English | MEDLINE | ID: mdl-32207968

ABSTRACT

Osimertinib is a covalent, third-generation epidermal growth factor receptor (EGFR) tyrosine kinase inhibitor (TKI) approved for treating non-small cell lung cancer patients with activating EGFR mutations (Exon19del or L858R) or with the T790M resistance mutation following disease progression on first- or second-generation EGFR TKIs. The aim of this work is to rationalize and understand how osimertinib achieves mutant EGFR selectivity over the wild-type (WT) by evaluating its kinetic mechanism of action. In doing so, we developed methodologies combining steady-state and pre-steady-state kinetics to determine the covalent inactivation rates (kinact) and reversible binding affinities (Ki) for osimertinib against WT, L858R, and L858R/T790M EGFR and compared these data to the inhibition kinetics of earlier generations of EGFR TKIs. The kinact/KI values indicate osimertinib inactivates L858R and L858R/T790M with 20- and 50-fold higher overall efficiencies, respectively, compared to that for WT. The Ki and kinact values reveal that osimertinib binds 3-fold tighter to and reacts 3-fold faster with L858R than WT EGFR and binds 17-fold tighter to and reacts 3-fold faster with L858R/T790M than with the WT EGFR. We conclude that osimertinib overcomes the T790M mutation through improved affinities from stronger hydrophobic interactions with Met790 versus Thr790 and an improved rate of covalent bond formation via better positioning of the acrylamide warhead, while osimertinib targets the L858R mutation through better affinities and reactivities with the mutant in the context of differential binding affinities of the competing substrate ATP. This work highlights the importance of optimizing both reversible drug-target interactions and inactivation rates for covalent inhibitors to achieve selectivity in targeting mutant EGFRs.


Subject(s)
Acrylamides/chemistry , Aniline Compounds/chemistry , Antineoplastic Agents/chemistry , Carcinoma, Non-Small-Cell Lung/enzymology , Lung Neoplasms/enzymology , Protein Kinase Inhibitors/chemistry , Acrylamides/administration & dosage , Aniline Compounds/administration & dosage , Antineoplastic Agents/administration & dosage , Carcinoma, Non-Small-Cell Lung/drug therapy , ErbB Receptors/chemistry , ErbB Receptors/genetics , ErbB Receptors/metabolism , Humans , Kinetics , Lung Neoplasms/drug therapy , Mutation , Protein Kinase Inhibitors/administration & dosage
5.
PLoS One ; 14(11): e0225145, 2019.
Article in English | MEDLINE | ID: mdl-31703099

ABSTRACT

USP14 is a cysteine protease deubiquitinase associated with the proteasome and plays important catalytic and allosteric roles in proteasomal degradation. USP14 inhibition has been considered a therapeutic strategy for accelerating degradation of aggregation-prone proteins in neurodegenerative diseases and for inhibiting proteasome function to induce apoptotic cell death in cancers. Here we studied the effects of USP14 inhibition in mammalian cells using small molecule inhibitors and an inactive USP14 mutant C114A. Neither the inhibitors nor USP14 C114A showed consistent or significant effects on the level of TDP-43, tau or α-synuclein in HEK293T cells. However, USP14 C114A led to a robust accumulation of ubiquitinated proteins, which were isolated by ubiquitin immunoprecipitation and identified by mass spectrometry. Among these proteins we confirmed that ubiquitinated ß-catenin accumulated in the cells expressing USP14 C114A with immunoblotting and immunoprecipitation experiments. The proteasome binding domain of USP14 C114A is required for its effect on ubiquitinated proteins. UCHL5 is the other cysteine protease deubiquitinase associated with the proteasome. Interestingly, the inactive mutant of UCHL5 C88A also caused an accumulation of ubiquitinated proteins in HEK293T cells but did not affect ß-catenin, demonstrating USP14 but not UCHL5 has a specific effect on ß-catenin. We used ubiquitin immunoprecipitation and mass spectrometry to identify the accumulated ubiquitinated proteins in UCHL5 C88A expressing cells which are mostly distinct from those identified in USP14 C114A expressing cells. Among the identified proteins are well established proteasome substrates and proteasome subunits. Besides ß-catenin, we also verified with immunoblotting that UCHL5 C88A inhibits its own deubiquitination and USP14 C114A inhibits deubiquitination of two proteasomal subunits PSMC1 and PSMD4. Together our data suggest that USP14 and UCHL5 can deubiquitinate distinct substrates at the proteasome and regulate the ubiquitination of the proteasome itself which is tightly linked to its function.


Subject(s)
Mutation , Small Molecule Libraries/pharmacology , Ubiquitin Thiolesterase/genetics , Ubiquitin Thiolesterase/pharmacology , Ubiquitinated Proteins/metabolism , Binding Sites , DNA-Binding Proteins/metabolism , HEK293 Cells , Humans , Mass Spectrometry , Proteasome Endopeptidase Complex/metabolism , Ubiquitin Thiolesterase/chemistry , Ubiquitin Thiolesterase/metabolism , Ubiquitination , alpha-Synuclein/metabolism , beta Catenin/metabolism
6.
Front Mol Neurosci ; 12: 120, 2019.
Article in English | MEDLINE | ID: mdl-31178690

ABSTRACT

The astrocyte-specific enzyme glutamine synthetase (GS), which catalyzes the amidation of glutamate to glutamine, plays an essential role in supporting neurotransmission and in limiting NH4 + toxicity. Accordingly, deficits in GS activity contribute to epilepsy and neurodegeneration. Despite its central role in brain physiology, the mechanisms that regulate GS activity are poorly defined. Here, we demonstrate that GS is directly phosphorylated on threonine residue 301 (T301) within the enzyme's active site by cAMP-dependent protein kinase (PKA). Phosphorylation of T301 leads to a dramatic decrease in glutamine synthesis. Enhanced T301 phosphorylation was evident in a mouse model of epilepsy, which may contribute to the decreased GS activity seen during this trauma. Thus, our results highlight a novel molecular mechanism that determines GS activity under both normal and pathological conditions.

7.
Drug Metab Dispos ; 45(12): 1345-1353, 2017 12.
Article in English | MEDLINE | ID: mdl-28986473

ABSTRACT

Phosphorylation of xenobiotics is rare, probably owing to a strong evolutionary pressure against it. This rarity may have attracted more attention recently as a result of intentionally designed kinase-substrate analogs that depend on kinase-catalyzed activation to form phosphorylated active drugs. We report a rare phosphorylated metabolite observed unexpectedly in mouse plasma samples after an oral dose of a Tankyrase inhibitor that was not intended to be a kinase substrate, i.e., (S)-2-(4-(6-(3,4-dimethylpiperazin-1-yl)-4-methylpyridin-3-yl)phenyl)-8-(hydroxymethyl)quinazolin-4(3H)-one (AZ2381). The phosphorylated metabolite was not generated in mouse hepatocytes. In vitro experiments showed that the phosphorylation of AZ2381 occurred in mouse whole blood with heparin as anticoagulant but not in mouse plasma. The phosphorylated metabolite was also produced in rat, dog, and human blood, albeit at lower yields than in mouse. Divalent metal ions are required for the phosphorylation since the reaction is inhibited by the metal chelator EDTA. Further investigations with different cellular fractions of mouse blood revealed that the phosphorylation of AZ2381 was mediated by erythrocytes but did not occur with leukocytes. The levels of 18O incorporation into the phosphorylated metabolite when inorganic 18O4-phosphate and γ-18O4-ATP were added to the mouse blood incubations separately suggested that the phosphoryl transfer was from inorganic phosphate rather than ATP. It remains unclear which enzyme present in red blood cells is responsible for this rare phosphorylation.


Subject(s)
Erythrocytes/metabolism , Phosphotransferases/metabolism , Piperazines/metabolism , Quinazolines/metabolism , Tankyrases/antagonists & inhibitors , Xenobiotics/metabolism , Administration, Oral , Animals , Dogs , Edetic Acid/pharmacology , Erythrocytes/drug effects , Female , Heparin/blood , Heparin/metabolism , Hepatocytes/metabolism , Humans , Mice , Mice, SCID , Phosphates/metabolism , Phosphorylation/drug effects , Piperazines/blood , Piperazines/chemical synthesis , Piperazines/pharmacology , Quinazolines/blood , Quinazolines/chemical synthesis , Quinazolines/pharmacology , Rats , Xenobiotics/blood , Xenobiotics/chemical synthesis , Xenobiotics/pharmacology
8.
Proc Natl Acad Sci U S A ; 113(29): 8188-93, 2016 07 19.
Article in English | MEDLINE | ID: mdl-27382179

ABSTRACT

Mutations conferring resistance to translation inhibitors often alter the structure of rRNA. Reduced susceptibility to distinct structural antibiotic classes may, therefore, emerge when a common ribosomal binding site is perturbed, which significantly reduces the clinical utility of these agents. The translation inhibitors negamycin and tetracycline interfere with tRNA binding to the aminoacyl-tRNA site on the small 30S ribosomal subunit. However, two negamycin resistance mutations display unexpected differential antibiotic susceptibility profiles. Mutant U1060A in 16S Escherichia coli rRNA is resistant to both antibiotics, whereas mutant U1052G is simultaneously resistant to negamycin and hypersusceptible to tetracycline. Using a combination of microbiological, biochemical, single-molecule fluorescence transfer experiments, and X-ray crystallography, we define the specific structural defects in the U1052G mutant 70S E. coli ribosome that explain its divergent negamycin and tetracycline susceptibility profiles. Unexpectedly, the U1052G mutant ribosome possesses a second tetracycline binding site that correlates with its hypersusceptibility. The creation of a previously unidentified antibiotic binding site raises the prospect of identifying similar phenomena in antibiotic-resistant pathogens in the future.


Subject(s)
Anti-Bacterial Agents/pharmacology , Protein Synthesis Inhibitors/pharmacology , Ribosomes/genetics , Tetracycline/pharmacology , Amino Acids, Diamino/pharmacology , Drug Resistance, Bacterial/genetics , Escherichia coli/genetics , Mutation , RNA, Bacterial/genetics , RNA, Ribosomal/genetics
10.
J Biol Chem ; 290(34): 20984-20994, 2015 Aug 21.
Article in English | MEDLINE | ID: mdl-26149691

ABSTRACT

We characterized the inhibition of Neisseria gonorrhoeae type II topoisomerases gyrase and topoisomerase IV by AZD0914 (AZD0914 will be henceforth known as ETX0914 (Entasis Therapeutics)), a novel spiropyrimidinetrione antibacterial compound that is currently in clinical trials for treatment of drug-resistant gonorrhea. AZD0914 has potent bactericidal activity against N. gonorrhoeae, including multidrug-resistant strains and key Gram-positive, fastidious Gram-negative, atypical, and anaerobic bacterial species (Huband, M. D., Bradford, P. A., Otterson, L. G., Basrab, G. S., Giacobe, R. A., Patey, S. A., Kutschke, A. C., Johnstone, M. R., Potter, M. E., Miller, P. F., and Mueller, J. P. (2014) In Vitro Antibacterial Activity of AZD0914: A New Spiropyrimidinetrione DNA Gyrase/Topoisomerase Inhibitor with Potent Activity against Gram-positive, Fastidious Gram-negative, and Atypical Bacteria. Antimicrob. Agents Chemother. 59, 467-474). AZD0914 inhibited DNA biosynthesis preferentially to other macromolecules in Escherichia coli and induced the SOS response to DNA damage in E. coli. AZD0914 stabilized the enzyme-DNA cleaved complex for N. gonorrhoeae gyrase and topoisomerase IV. The potency of AZD0914 for inhibition of supercoiling and the stabilization of cleaved complex by N. gonorrhoeae gyrase increased in a fluoroquinolone-resistant mutant enzyme. When a mutation, conferring mild resistance to AZD0914, was present in the fluoroquinolone-resistant mutant, the potency of ciprofloxacin for inhibition of supercoiling and stabilization of cleaved complex was increased greater than 20-fold. In contrast to ciprofloxacin, religation of the cleaved DNA did not occur in the presence of AZD0914 upon removal of magnesium from the DNA-gyrase-inhibitor complex. AZD0914 had relatively low potency for inhibition of human type II topoisomerases α and ß.


Subject(s)
Anti-Bacterial Agents/pharmacology , Barbiturates/pharmacology , DNA Gyrase/metabolism , DNA Topoisomerase IV/antagonists & inhibitors , DNA, Bacterial/chemistry , Spiro Compounds/pharmacology , Topoisomerase II Inhibitors/pharmacology , Ciprofloxacin/pharmacology , Clinical Trials as Topic , DNA/chemistry , DNA/metabolism , DNA Gyrase/genetics , DNA Topoisomerase IV/genetics , DNA Topoisomerase IV/metabolism , DNA, Bacterial/metabolism , Drug Resistance, Bacterial/drug effects , Escherichia coli/drug effects , Escherichia coli/enzymology , Escherichia coli/genetics , Fluoroquinolones/pharmacology , Gene Expression , Humans , Isoxazoles , Morpholines , Mutation , Neisseria gonorrhoeae/drug effects , Neisseria gonorrhoeae/enzymology , Neisseria gonorrhoeae/genetics , Oxazolidinones , Species Specificity
11.
Sci Rep ; 5: 11827, 2015 Jul 14.
Article in English | MEDLINE | ID: mdl-26168713

ABSTRACT

With the diminishing effectiveness of current antibacterial therapies, it is critically important to discover agents that operate by a mechanism that circumvents existing resistance. ETX0914, the first of a new class of antibacterial agent targeted for the treatment of gonorrhea, operates by a novel mode-of-inhibition against bacterial type II topoisomerases. Incorporating an oxazolidinone on the scaffold mitigated toxicological issues often seen with topoisomerase inhibitors. Organisms resistant to other topoisomerase inhibitors were not cross-resistant with ETX0914 nor were spontaneous resistant mutants to ETX0914 cross-resistant with other topoisomerase inhibitor classes, including the widely used fluoroquinolone class. Preclinical evaluation of ETX0914 pharmacokinetics and pharmacodynamics showed distribution into vascular tissues and efficacy in a murine Staphylococcus aureus infection model that served as a surrogate for predicting efficacious exposures for the treatment of Neisseria gonorrhoeae infections. A wide safety margin to the efficacious exposure in toxicological evaluations supported progression to Phase 1. Dosing ETX0914 in human volunteers showed sufficient exposure and minimal adverse effects to expect a highly efficacious anti-gonorrhea therapy.


Subject(s)
Anti-Bacterial Agents/pharmacology , Anti-Bacterial Agents/therapeutic use , Barbiturates/pharmacology , Barbiturates/therapeutic use , Gonorrhea/drug therapy , Spiro Compounds/pharmacology , Spiro Compounds/therapeutic use , Topoisomerase II Inhibitors/pharmacology , Topoisomerase II Inhibitors/therapeutic use , Adult , Animals , Anti-Bacterial Agents/chemistry , Barbiturates/chemistry , DNA Topoisomerases, Type II/chemistry , Disease Models, Animal , Dogs , Dose-Response Relationship, Drug , Drug Resistance, Bacterial , Female , Fluoroquinolones/pharmacology , Gonorrhea/microbiology , Haplorhini , Humans , Isoxazoles , Male , Mice , Microbial Sensitivity Tests , Middle Aged , Models, Molecular , Molecular Conformation , Morpholines , Mutation , Neisseria gonorrhoeae/drug effects , Neisseria gonorrhoeae/genetics , Oxazolidinones , Rats , Spiro Compounds/chemistry , Staphylococcal Infections/drug therapy , Staphylococcal Infections/microbiology , Staphylococcus aureus/drug effects , Topoisomerase II Inhibitors/chemistry , Young Adult
12.
J Med Chem ; 58(15): 6264-82, 2015 Aug 13.
Article in English | MEDLINE | ID: mdl-26158756

ABSTRACT

A novel class of bacterial type-II topoisomerase inhibitor displaying a spiropyrimidinetrione architecture fused to a benzisoxazole scaffold shows potent activity against Gram-positive and fastidious Gram-negative bacteria. Here, we describe a series of N-linked oxazolidinone substituents on the benzisoxazole that improve upon the antibacterial activity of initially described compounds of the class, show favorable PK properties, and demonstrate efficacy in an in vivo Staphylococcus aureus infection model. Inhibition of the topoisomerases DNA gyrase and topoisomerase IV from both Gram-positive and a Gram-negative organisms was demonstrated. Compounds showed a clean in vitro toxicity profile, including no genotoxicity and no bone marrow toxicity at the highest evaluated concentrations or other issues that have been problematic for some fluoroquinolones. Compound 1u was identified for advancement into human clinical trials for treatment of uncomplicated gonorrhea based on a variety of beneficial attributes including the potent activity and the favorable safety profile.


Subject(s)
Isoxazoles/chemistry , Oxazolidinones/chemistry , Pyrimidines/pharmacology , Topoisomerase II Inhibitors/pharmacology , Animals , Cell Line , Crystallography, X-Ray , Dogs , Drug Discovery , Humans , Male , Pyrimidines/chemistry , Pyrimidines/toxicity , Rats , Structure-Activity Relationship , Topoisomerase II Inhibitors/chemistry , Topoisomerase II Inhibitors/toxicity
13.
J Med Chem ; 57(21): 9078-95, 2014 Nov 13.
Article in English | MEDLINE | ID: mdl-25286019

ABSTRACT

The compounds described herein with a spirocyclic architecture fused to a benzisoxazole ring represent a new class of antibacterial agents that operate by inhibition of DNA gyrase as corroborated in an enzyme assay and by the inhibition of precursor thymidine into DNA during cell growth. Activity resided in the configurationally lowest energy (2S,4R,4aR) diastereomer. Highly active compounds against Staphylococcus aureus had sufficiently high solubility, high plasma protein free fraction, and favorable pharmacokinetics to suggest that in vivo efficacy could be demonstrated, which was realized with compound (-)-1 in S. aureus mouse infection models. A high drug exposure NOEL on oral dosing in the rat suggested that a high therapeutic margin could be achieved. Importantly, (-)-1 was not cross-resistant with other DNA gyrase inhibitors such as fluoroquinolone and aminocoumarin antibacterials. Hence, this class shows considerable promise for the treatment of infections caused by multidrug resistant bacteria, including S. aureus.


Subject(s)
Anti-Bacterial Agents/chemical synthesis , Barbiturates/chemical synthesis , Heterocyclic Compounds, 4 or More Rings/chemical synthesis , Isoxazoles/chemical synthesis , Topoisomerase II Inhibitors/chemical synthesis , Animals , Anti-Bacterial Agents/pharmacokinetics , Anti-Bacterial Agents/therapeutic use , Barbiturates/pharmacokinetics , Barbiturates/therapeutic use , Female , Fluoroquinolones/pharmacology , Heterocyclic Compounds, 4 or More Rings/pharmacokinetics , Heterocyclic Compounds, 4 or More Rings/therapeutic use , Humans , Inhibitory Concentration 50 , Isoxazoles/pharmacokinetics , Isoxazoles/therapeutic use , Male , Mice , Pyridones/chemical synthesis , Pyridones/pharmacokinetics , Pyridones/therapeutic use , Rats, Wistar , Spiro Compounds/chemical synthesis , Spiro Compounds/pharmacokinetics , Staphylococcal Infections/drug therapy , Staphylococcus aureus/drug effects , Stereoisomerism , Structure-Activity Relationship , Topoisomerase II Inhibitors/pharmacokinetics , Topoisomerase II Inhibitors/therapeutic use
14.
Protein Expr Purif ; 104: 57-64, 2014 12.
Article in English | MEDLINE | ID: mdl-25240855

ABSTRACT

In Gram-negative bacteria, the cell wall is surrounded by an outer membrane, the outer leaflet of which is comprised of charged lipopolysaccharide (LPS) molecules. Lipid A, a component of LPS, anchors this molecule to the outer membrane. UDP-3-O-(R-3-hydroxymyristoyl)-N-acetylglucosamine deacetylase (LpxC) is a zinc-dependent metalloamidase that catalyzes the first committed step of biosynthesis of Lipid A, making it a promising target for antibiotic therapy. Formation of soluble aggregates of Pseudomonas aeruginosa LpxC protein when overexpressed in Escherichia coli has limited the availability of high quality protein for X-ray crystallography. Expression of LpxC in the presence of an inhibitor dramatically increased protein solubility, shortened crystallization time and led to a high-resolution crystal structure of LpxC bound to the inhibitor. However, this approach required large amounts of compound, restricting its use. To reduce the amount of compound needed, an overexpression strain of E. coli was created lacking acrB, a critical component of the major efflux pump. By overexpressing LpxC in the efflux deficient strain in the presence of LpxC inhibitors, several structures of P. aeruginosa LpxC in complex with different compounds were solved to accelerate structure-based drug design.


Subject(s)
Amidohydrolases/metabolism , Bacterial Proteins/metabolism , Escherichia coli Proteins/genetics , Multidrug Resistance-Associated Proteins/genetics , Pseudomonas aeruginosa/enzymology , Amidohydrolases/antagonists & inhibitors , Amidohydrolases/genetics , Bacterial Proteins/antagonists & inhibitors , Bacterial Proteins/genetics , Catalysis , Chromatography, Liquid , Crystallography, X-Ray , Escherichia coli , Gene Expression , Mass Spectrometry , Protein Conformation , Zinc/chemistry , Zinc/metabolism
15.
Bioorg Med Chem ; 22(21): 6256-69, 2014 Nov 01.
Article in English | MEDLINE | ID: mdl-25262942

ABSTRACT

An aminoquinazoline series targeting the essential bacterial enzyme GlmU (uridyltransferase) were previously reported (Biochem. J.2012, 446, 405). In this study, we further explored SAR through a combination of traditional medicinal chemistry and structure-based drug design, resulting in a novel scaffold (benzamide) with selectivity against protein kinases. Virtual screening identified fragments that could be fused into the core scaffold, exploiting additional binding interactions and thus improving potency. These efforts resulted in a hybrid compound with target potency increased by a 1000-fold, while maintaining selectivity against selected protein kinases and an improved level of solubility and protein binding. Despite these significant improvements no significant antibacterial activity was yet observed within this class.


Subject(s)
Enzyme Inhibitors/chemistry , Enzyme Inhibitors/pharmacology , Escherichia coli Proteins/antagonists & inhibitors , Escherichia coli/enzymology , Haemophilus influenzae/enzymology , Multienzyme Complexes/antagonists & inhibitors , Quinazolines/chemistry , Quinazolines/pharmacology , Animals , Anti-Bacterial Agents/chemistry , Anti-Bacterial Agents/pharmacology , Cell Wall/drug effects , Cell Wall/enzymology , Drug Design , Escherichia coli/drug effects , Escherichia coli Infections/drug therapy , Escherichia coli Infections/microbiology , Escherichia coli Proteins/metabolism , Haemophilus Infections/drug therapy , Haemophilus Infections/microbiology , Haemophilus influenzae/drug effects , Humans , Molecular Docking Simulation , Multienzyme Complexes/metabolism
16.
J Can Dent Assoc ; 79: d125, 2013.
Article in English | MEDLINE | ID: mdl-24059483
19.
Biochem Biophys Res Commun ; 437(1): 162-7, 2013 Jul 19.
Article in English | MEDLINE | ID: mdl-23806686

ABSTRACT

UMP kinase (PyrH) is an essential enzyme found only in bacteria, making it ideal as a target for the discovery of antibacterials. To identify inhibitors of PyrH, an assay employing Staphylococcus aureus PyrH coupled to pyruvate kinase/lactate dehydrogenase was developed and was used to perform a high throughput screen. A validated aminopyrimidine series was identified from screening. Kinetic characterization of this aminopyrimidine indicated it was a competitive inhibitor of ATP. We have shown that HTS can be used to identify potential leads for this novel target, the first ATP competitive inhibitor of PyrH reported.


Subject(s)
Adenosine Triphosphate/pharmacology , Enzyme Inhibitors/pharmacology , Nucleoside-Phosphate Kinase/antagonists & inhibitors , Staphylococcus aureus/drug effects , Staphylococcus aureus/enzymology , Drug Evaluation, Preclinical , Enzyme Assays , Enzyme Inhibitors/chemistry , High-Throughput Screening Assays , Kinetics , Microbial Sensitivity Tests , Nucleoside-Phosphate Kinase/metabolism , Pyrimidines/chemistry , Pyrimidines/pharmacology , Reproducibility of Results
20.
ACS Chem Biol ; 7(11): 1866-72, 2012 Nov 16.
Article in English | MEDLINE | ID: mdl-22908966

ABSTRACT

There is an urgent need for new antibacterials that pinpoint novel targets and thereby avoid existing resistance mechanisms. We have created novel synthetic antibacterials through structure-based drug design that specifically target bacterial thymidylate kinase (TMK), a nucleotide kinase essential in the DNA synthesis pathway. A high-resolution structure shows compound TK-666 binding partly in the thymidine monophosphate substrate site, but also forming new induced-fit interactions that give picomolar affinity. TK-666 has potent, broad-spectrum Gram-positive microbiological activity (including activity against methicillin-resistant Staphylococcus aureus and vancomycin-resistant Enterococcus), bactericidal action with rapid killing kinetics, excellent target selectivity over the human ortholog, and low resistance rates. We demonstrate in vivo efficacy against S. aureus in a murine infected-thigh model. This work presents the first validation of TMK as a compelling antibacterial target and provides a rationale for pursuing novel clinical candidates for treating Gram-positive infections through TMK.


Subject(s)
Anti-Bacterial Agents/chemistry , Anti-Bacterial Agents/pharmacology , Gram-Positive Bacteria/drug effects , Gram-Positive Bacteria/enzymology , Nucleoside-Phosphate Kinase/antagonists & inhibitors , Enterococcus/drug effects , Enterococcus/enzymology , Gram-Positive Bacterial Infections/drug therapy , Humans , Models, Molecular , Nucleoside-Phosphate Kinase/metabolism , Staphylococcal Infections/drug therapy , Staphylococcus aureus/drug effects , Staphylococcus aureus/enzymology
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