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1.
J Dairy Sci ; 100(3): 1657-1663, 2017 Mar.
Article in English | MEDLINE | ID: mdl-28088415

ABSTRACT

The extraction of high-quality DNA from processed dairy products is often the crucial step in an authentication process by PCR-based methods. In this study, we optimized a novel DNA extraction method for milk powder and used the extracted DNA for identification of milk powder based on PCR analysis. The DNA quality was assessed by amplifying target sequences from mitochondrial genes, as well as by monitoring the yield, purity, and integrity of the extracted DNA. In addition, a laboratory adulteration model of milk powder was detected by PCR-based methods (PCR and real-time PCR) using primers targeting the mitochondrial 12S rRNA gene. Results showed that a sufficient amount and quality of DNA could be isolated from milk powder with this method. Both PCR and real-time PCR detection of cow milk compositions in goat milk powder further confirmed the DNA extracted with this extraction method could be widely used in addressing milk powder adulterant by a PCR-based method.


Subject(s)
DNA/isolation & purification , Milk , Animals , Cattle , DNA/genetics , Female , Goats/genetics , Polymerase Chain Reaction , Real-Time Polymerase Chain Reaction
2.
Curr Med Chem ; 22(34): 3910-21, 2015.
Article in English | MEDLINE | ID: mdl-26282942

ABSTRACT

As far back as Melville Wolfrom's acyclic sugar synthesis in the 1960's, synthesis of flexible nucleoside analogues have been an area of interest. This concept, however, went against years of enzyme-substrate binding theory. Hence, acyclic methodology in antiviral drug design did not take off until the discovery and subsequent FDA approval of such analogues as Acyclovir and Tenofovir. More recently, the observation that flexible nucleosides could overcome drug resistance spawned a renewed interest in the field of nucleoside drug design. The next generation of flexible nucleosides shifted the focus from the sugar moiety to the nucleobase. With analogues such as Seley-Radtke "fleximers", and Herdewijn's C5 substituted 2'-deoxyuridines, the area of base flexibility has seen great expansion. More recently, the marriage of these methodologies with acyclic sugars has resulted in a series of acyclic flex-base nucleosides with a wide range of antiviral properties, including some of the first to exhibit anti-coronavirus activity. Various flexible nucleosides and their corresponding nucleobases will be compared in this review.


Subject(s)
Antiviral Agents/chemistry , Drug Design , Nucleosides/chemistry , Antiviral Agents/pharmacology , HIV/drug effects , HIV/enzymology , HIV Reverse Transcriptase/antagonists & inhibitors , HIV Reverse Transcriptase/metabolism , Humans , Nucleosides/pharmacology , Reverse Transcriptase Inhibitors/chemistry , Reverse Transcriptase Inhibitors/pharmacology , Simplexvirus/drug effects
3.
J Dairy Sci ; 97(11): 6804-9, 2014 Nov.
Article in English | MEDLINE | ID: mdl-25218756

ABSTRACT

Isolation of genomic DNA is a prerequisite for assessment of milk quality. As a source of genomic DNA, milk somatic cells from milking ruminants are practical, animal friendly, and cost-effective sources. Extracting DNA from milk can avoid the stress response caused by blood and tissue sampling of cows. In this study, we optimized a novel DNA extraction method for amplifying long (>1,000 bp) DNA fragments and used it to evaluate the isolation of DNA from small amounts of milk. The techniques used for the separation of milk somatic cell were explored and combined with a sodium dodecyl sulfate (SDS)-phenol method for optimizing DNA extraction from milk. Spectrophotometry was used to determine the concentration and purity of the extracted DNA. Gel electrophoresis and DNA amplification technologies were used for to determine DNA size and quality. The DNA of 112 cows was obtained from milk (samples of 13 ± 1 mL) and the corresponding optical density ratios at 260:280 nm were between 1.65 and 1.75. Concentrations were between 12 and 45 µg/µL and DNA size and quality were acceptable. The specific PCR amplification of 1,019- and 729-bp bovine DNA fragments was successfully carried out. This novel method can be used as a practical, fast, and economical mean for long genomic DNA extraction from a small amount of milk.


Subject(s)
DNA/isolation & purification , Food Quality , Genomics/methods , Milk/chemistry , Animals , Cattle , DNA/genetics , Female , Polymerase Chain Reaction/veterinary , Sequence Analysis, DNA
4.
J Ethnopharmacol ; 143(2): 565-71, 2012 Sep 28.
Article in English | MEDLINE | ID: mdl-22835814

ABSTRACT

ETHNOPHARMACOLOGICAL RELEVANCE: The leaves extract of Apocynum venetum (AVLE), also known as "luobuma", have long been used in traditional Chinese medicine to treat hypertension and depression in parts of China and it has been shown to possess anti-oxidant and anti-lipid peroxidation effects. AVLE (10 µg/ml) has been reported to have a long-lasting endothelium-dependent relaxant effect and this effect has been proposed to be due to its nitric oxide(NO)-releasing and superoxide anion(SOA)-scavenging properties. AIM OF THE STUDY: The present study seeks to evaluate the differential actions of AVLE extract between Ang II- and PE-induced vasoconstriction and the involvement of superoxide anions. MATERIALS AND METHODS: Single dose of Ang II (100 nM and 1 nM)- or PE (0.1 µM)-induced contraction were assessed in both endothelium-intact and -denuded aortic rings after pre-incubation of AVLE (10 µg/ml) for 15 min. The experiment was repeated in either the presence of NO synthase inhibitor, L-NAME (300 µM) or selective AT(1) receptor inhibitor, losartan (0.1 nM), or superoxide scavenger, tiron (1 mM) or a combination of L-NAME and AVLE. Superoxide production was measured by using enhanced-chemiluminescence assay. RESULTS: We have demonstrated that AVLE (10 µg/ml) effectively suppressed the Ang II-induced contraction (100 nM and 1 nM) of both endothelium-intact and -denuded rat aortic rings. In endothelium-intact rings, L-NAME, reversed AVLE-induced inhibition of Ang II-contraction. PE-induced contraction was significantly inhibited by AVLE in endothelium-intact rings, but not in endothelium-denuded rings. The inhibition by AVLE of PE-induced contraction was totally abolished in the presence of L-NAME. Ang II-induced SOA production concentration dependently with the optimal effect seen at 100 nM of Ang II, and AVLE (0.3, 1, 10 µg/ml) reduced this effect. SOA production in Ang II-stimulated rings was significantly higher than unstimulated control rings, while PE did not stimulate SOA production at all. SOA formation in the presence of Ang II was also inhibited in the presence of SOD (superoxide scavenger), DPI (NADPH inhibitor) and losartan (specific AT(1) receptor antagonist). CONCLUSION: These results collectively suggest that the ability of AVLE in inhibiting Ang II-induced contraction via its SOA scavenging properties and nitric oxide releasing effect may account for its usage as an antihypertensive treatment in traditional folk medicine.


Subject(s)
Antihypertensive Agents/pharmacology , Aorta, Thoracic/drug effects , Apocynum , Plant Extracts/pharmacology , Vasoconstriction/drug effects , Vasodilator Agents/pharmacology , Angiotensin II , Animals , Aorta, Thoracic/physiology , In Vitro Techniques , Male , Medicine, Tibetan Traditional , Nitric Oxide/physiology , Plant Leaves , Rats , Rats, Sprague-Dawley , Superoxides/metabolism , Vasoconstriction/physiology
5.
Br J Anaesth ; 108(6): 953-60, 2012 Jun.
Article in English | MEDLINE | ID: mdl-22451507

ABSTRACT

BACKGROUND: Measuring outcomes and quality in anaesthesia is challenging. In the UK, there is increased focus on these as a result of changes in Department of Health strategy and the imminent introduction of mandatory revalidation for all doctors. A definition of quality may differ according to the observer's standpoint and numerous performance measures may contribute to overall quality. Patients, surgeons, anaesthetic assistants, recovery nurses, managers, and anaesthetic peers are each likely to have their own perspective on 'anaesthetic quality' and would perhaps suggest different metrics to measure it. Speed, efficiency, cost, interpersonal skills, complication rates, patient recorded outcome measures, and satisfaction are all valid as quality measures, but none alone captures anaesthetic quality. Performance data are frequently presented as single-dimension measurements (e.g. pain, postoperative nausea and vomiting, patient satisfaction), but this does not address the fact that two or more domains may be closely related (e.g. use of regional anaesthesia and quality of analgesia) or in opposition (e.g. use of regional anaesthesia and speed). METHODS: We introduce the concept of a 'performance polygon' as a tool to represent multidimensional performance assessment. This method of data presentation encourages balanced appraisal of anaesthetic quality. RESULTS: Performance polygons may be used to compare individual performance with peers, published outcome norms, trends in performance over time, to explore aspects of team performance and potentially capture data that are required for medical revalidation. CONCLUSIONS: Performance polygons enable easy comparison with any relevant data set and are a visual tool that potentially has wider applications in healthcare quality improvement.


Subject(s)
Anesthesia/standards , Outcome Assessment, Health Care , Quality of Health Care/standards , General Surgery/standards , Humans , Patient Care Team/standards
6.
Antimicrob Agents Chemother ; 56(1): 148-53, 2012 Jan.
Article in English | MEDLINE | ID: mdl-21986822

ABSTRACT

Infections and thromboses are the most common complications associated with central venous catheters. Suggested strategies for prevention and management of these complications include the use of heparin-coated catheters, heparin locks, and antimicrobial lock therapy. However, the effects of heparin on Candida albicans biofilms and planktonic cells have not been previously studied. Therefore, we sought to determine the in vitro effect of a heparin sodium preparation (HP) on biofilms and planktonic cells of C. albicans. Because HP contains two preservatives, methyl paraben (MP) and propyl paraben (PP), these compounds and heparin sodium without preservatives (Pure-H) were also tested individually. The metabolic activity of the mature biofilm after treatment was assessed using XTT [2,3-bis-(2-methoxy-4-nitro-5-sulfophenyl)-2H-tetrazolium-5-carboxanilide] reduction and microscopy. Pure-H, MP, and PP caused up to 75, 85, and 60% reductions of metabolic activity of the mature preformed C. albicans biofilms, respectively. Maximal efficacy against the mature biofilm was observed with HP (up to 90%) compared to the individual compounds (P < 0.0001). Pure-H, MP, and PP each inhibited C. albicans biofilm formation up to 90%. A complete inhibition of biofilm formation was observed with HP at 5,000 U/ml and higher. When tested against planktonic cells, each compound inhibited growth in a dose-dependent manner. These data indicated that HP, MP, PP, and Pure-H have in vitro antifungal activity against C. albicans mature biofilms, formation of biofilms, and planktonic cells. Investigation of high-dose heparin-based strategies (e.g., heparin locks) in combination with traditional antifungal agents for the treatment and/or prevention of C. albicans biofilms is warranted.


Subject(s)
Antifungal Agents/pharmacology , Biofilms/drug effects , Candida albicans/drug effects , Heparin/pharmacology , Parabens/pharmacology , Plankton/drug effects , Biofilms/growth & development , Candida albicans/growth & development , Candida albicans/ultrastructure , Catheter-Related Infections/prevention & control , Catheterization, Central Venous , Dose-Response Relationship, Drug , Humans , Microbial Sensitivity Tests , Microscopy, Electron, Scanning , Plankton/growth & development , Plankton/ultrastructure , Tetrazolium Salts
7.
PLoS One ; 6(12): e28625, 2011.
Article in English | MEDLINE | ID: mdl-22194869

ABSTRACT

We report a case of fatal disseminated infection with Cryptococcus gattii in a patient from New Mexico. The patient had no history of recent travel to known C. gattii-endemic areas. Multilocus sequence typing revealed that the isolate belonged to the major molecular type VGIII. Virulence studies in a mouse pulmonary model of infection demonstrated that the strain was less virulent than other C. gattii strains. This represents the first documented case of C. gattii likely acquired in New Mexico.


Subject(s)
Cryptococcosis/microbiology , Cryptococcus gattii/physiology , Animals , Autopsy , Brain/microbiology , Brain/pathology , Cryptococcosis/pathology , Cryptococcus gattii/classification , Cryptococcus gattii/genetics , Cryptococcus gattii/pathogenicity , Fatal Outcome , Genotype , Humans , Lung/microbiology , Lung/pathology , Male , Mice , Mice, Inbred BALB C , Middle Aged , Multilocus Sequence Typing , New Mexico , Phylogeny , Virulence
8.
J Hum Evol ; 55(2): 300-11, 2008 Aug.
Article in English | MEDLINE | ID: mdl-18423801

ABSTRACT

Ascertaining the timing of the peopling of Europe, after the first out-of-Africa demographic expansion at the end of the Pliocene, is of great interest to paleoanthropologists. One of the earliest direct evidences for fossil hominins in western Europe comes from an infilled karstic cave site called Gran Dolina at Atapuerca, in a stratum approximately 1.5m below the Brunhes-Matuyama (B-M) geomagnetic boundary (780ka) within lithostratigraphic unit TD6. However, most of the meters of fossil- and tool-bearing strata at Gran Dolina have been difficult to date. Therefore, we applied both thermoluminescence (TL) and infrared-stimulated-luminescence (IRSL) multi-aliquot dating methods to fine-silt fractions from sediment samples within Gran Dolina and the nearby Galería cave site. We also applied these methods to samples from the present-day surface soils on the surrounding limestone hill slopes to test the luminescence-clock-zeroing-by-daylight assumption. Within the uppermost 4m of the cave deposits at Gran Dolina, TL and paired TL and IRSL ages range stratigraphically from 198+/-19ka to 244+/-26ka. Throughout Gran Dolina, all luminescence results are stratigraphically self-consistent and, excepting results from two stratigraphic units, are consistent with prior ESR-U-series ages from progressively deeper strata. Thermoluminescence ages culminate at 960+/-120ka approximately 1m below the 780ka B-M boundary. At Galería, with one exception, TL and IRSL ages range stratigraphically downward from 185+/-26ka to 503+/-95ka at the base of the lowermost surface-inwash facies. These results indicate that TL and (sometimes) IRSL are useful dating tools for karstic inwash sediments older than ca. 100ka, and that a more accurate chronostratigraphic correlation is now possible among the main Atapuerca sites (Gran Dolina, Galería, Sima de los Huesos). Furthermore, the oldest TL age of ca. 960ka from Gran Dolina, consistent with biostratigraphic and paleomagnetic evidence, implies a probable numeric age of 900-950ka for the oldest hominin remains ( approximately 0.8m below the TL sample). This age window suggests a correspondence to Marine Isotope Stage (MIS) 25, a relatively warm and humid interglaciation.


Subject(s)
Anthropology , Fossils , Geologic Sediments/chemistry , Luminescent Measurements/methods , Paleontology , Spain
9.
Med Biol Eng Comput ; 40(1): 34-40, 2002 Jan.
Article in English | MEDLINE | ID: mdl-11954706

ABSTRACT

Transiently evoked otoacoustic emissions (TEOAEs) are widely used in newborn hearing screening programmes for early detection of hearing losses. To increase the accuracy of a TEOAE pass/fail criterion that uses the wavelet method, it was demonstrated that the large estimation variance is a possible reason for the inaccuracy, and a modified wavelet method is proposed to solve the inaccuracy problem. In the modified wavelet method, N paired buffers, instead of only one, were used to store the total 512 subaveraged responses, and then the average of the calculated N cross-correlation coefficients between N pairs of TEOAE signals was taken in the pass/fail criterion. Four sets of 256 synthesised noise and eight sets of 256 synthesised noisy TEOAE signals were tested, and each set was tested 1,000 times. The results showed that the standard deviation of the correlation estimation was greatly reduced by using this average value with N selected as 4. As a result, the total number of single-scale cross-correlation coefficients below 50% decreased from 1281 to 195 for noisy TEOAE signals, and the total number of single-scale cross-correlation coefficients above 50% decreased from 90 to 0 for synthesised noise.


Subject(s)
Otoacoustic Emissions, Spontaneous , Signal Processing, Computer-Assisted , Acoustic Stimulation , Hearing Tests/methods , Humans , Infant, Newborn , Neonatal Screening/methods
11.
Int J Cancer ; 97(6): 780-6, 2002 Feb 20.
Article in English | MEDLINE | ID: mdl-11857354

ABSTRACT

To identify the genes involved in cervical carcinogenesis, we applied the mRNA differential display method and identified a candidate tumor suppressor gene, HCCS-1, which was present in normal cervical tissue but absent in cervical cancer, metastatic lymph node and CUMC-6 cervical cancer cell line. HCCS-1 transcripts were expressed in many normal tissues including leukocyte, lung, spleen, liver, heart and uterine cervix. Its expression was absent in 8 human cancer cell lines. HCCS-1-transfected HeLa cells exhibited growth inhibition by about 50%. This inhibitory effect of HCCS-1 on cervical cancer cells was associated with apoptotic process including DNA fragmentation. HCCS-1-transfected HeLa cells were shown to release cytochrome c from mitochondria, which activates caspase-9 and -3 and finally results in cleavage of poly(ADP-ribose) polymerase. Apoptosis formation was detected by propidium-iodide/annexin V. HCCS-1-transfected HeLa cells were more sensitive to adriamycin or UVC ray triggered apoptosis. These results suggest that HCCS-1 is downregulated in multiple human tumor types and may serve as a candidate tumor suppressor gene through apoptotic pathway against human cervical cancer.


Subject(s)
Apoptosis , Genes, Tumor Suppressor/physiology , Proteins/physiology , Tumor Suppressor Proteins , Uterine Cervical Neoplasms/pathology , Amino Acid Sequence , Annexin A5/metabolism , Base Sequence , Blotting, Northern , Blotting, Western , Caspase 3 , Caspases/metabolism , Cell Cycle , Cytochrome c Group/metabolism , Down-Regulation , Doxorubicin/pharmacology , Female , Gene Expression Profiling , Gene Expression Regulation, Neoplastic , HeLa Cells/drug effects , HeLa Cells/enzymology , HeLa Cells/radiation effects , Humans , Lymphatic Metastasis , Molecular Sequence Data , Transfection , Uterine Cervical Neoplasms/genetics , Uterine Cervical Neoplasms/metabolism , Vesicular Transport Proteins
12.
J Hum Evol ; 41(6): 679-88, 2001 Dec.
Article in English | MEDLINE | ID: mdl-11782113

ABSTRACT

Thermal ionization mass spectrometric(230)Th/(234)U dating has been carried out on intercalated speleothem samples from the limestone cave occupied by Homo erectus at Zhoukoudian, China. The samples were recently collected in proper stratigraphic context after detailed field examinations. The results show that the age of the No. 5 Skull from Layer 3 is >400 ka, possibly in the range of about 400-500 ka, and that the hominid fossils from the lower strata are at least 600 ka and possibly >800 ka, much older than previously thought. The near-equilibrium(230)Th/(234)U ratios and internal consistency of the dates and stratigraphy lend credence to the results and allow us to comment on their important implications for human evolution.


Subject(s)
Anthropology, Physical/methods , Fossils , Hominidae , Thorium/analysis , Uranium/analysis , Animals , Humans , Sensitivity and Specificity , Time Factors
13.
Pediatr Res ; 47(2): 240-5, 2000 Feb.
Article in English | MEDLINE | ID: mdl-10674353

ABSTRACT

In an acute lung injury model, we previously observed reversal of pulmonary dysfunction with natural surfactant administered by lavage (dose = 18 mg/kg phospholipid). The present study questioned whether a lower dose of phospholipid would be effective if a recombinant preparation rather than natural surfactant were used. Acute lung injury was induced by repeated saline lung lavage in ventilated, sedated, and paralyzed piglets. Three concentrations of recombinant surfactant were studied (low phospholipid, 1 mg/mL; medium phospholipid, 4 mg/mL; high phospholipid, 13.5 mg/mL). Control piglets received no surfactant. Thirty-five milliliters per kilogram of surfactant was administered by gravity, followed by passive drainage of excess fluid. All treatment groups retained similar volumes (4.7+/-0.3 mL/ kg), corresponding to phospholipid doses of 4+/-0.4, 22+/-3, and 67+/-4 mg/kg in low, medium, and high-dose groups, respectively. Treatment groups showed significant improvement in Pao2 compared with controls. Other parameters different from controls were found in only the medium and high-dose groups. All surfactant-treated groups showed improvement over time in Pao2, Paco2, lung resistance mean airway pressure, functional residual capacity, and dynamic compliance. These data support the statement that whereas there is a dose response to exogenous surfactant, the effective dose of recombinant surfactant in acute lung injury may be as low as 4 mg/kg phospholipid when administered by lavage.


Subject(s)
Lung Injury , Surface-Active Agents/therapeutic use , Swine Diseases/therapy , Animals , Bronchoalveolar Lavage , Recombinant Proteins/administration & dosage , Recombinant Proteins/therapeutic use , Respiratory Function Tests , Surface-Active Agents/administration & dosage , Swine
14.
Int J Legal Med ; 114(1-2): 41-4, 2000.
Article in English | MEDLINE | ID: mdl-11197626

ABSTRACT

DNA typing was performed on 379 randomly selected unrelated Koreans using the nine short tandem repeat loci FGA, VWA, D3S1358, D18S51, D21S11, D8S1179, D7S820, D13S317 and D5S818 present in the AmpF/STR Profiler Plus PCR amplification kit. Allele frequencies, heterozygosity, power of discrimination, mean exclusion chance, and polymorphism information content of each locus were calculated by statistical analysis. All nine loci were in Hardy-Weinberg equilibrium. The combined discrimination index and the combined mean exclusion chance in Koreans was 2.31 x 10(-12) and 0.99983, respectively. By evaluation of 297 children from 128 families, 2 mutations were found at the FGA locus and 1 each at the D18S51 and D13S317 loci. This study demonstrates that this multiplex system is a useful and convenient tool for forensic identification and parentage testing in Korea.


Subject(s)
Forensic Anthropology , Genetics, Population , Paternity , Tandem Repeat Sequences , Adolescent , Adult , Aged , Child , Female , Gene Frequency , Humans , Korea , Linkage Disequilibrium , Male , Middle Aged , Mutation , Polymorphism, Genetic
15.
Drug Metab Dispos ; 27(11): 1232-41, 1999 Nov.
Article in English | MEDLINE | ID: mdl-10534306

ABSTRACT

Allometric scaling may be used in drug development to predict the pharmacokinetics of xenobiotics in humans from animal data. Although allometry may be successful for compounds that are excreted unchanged or that are oxidatively metabolized (with corrections for metabolic capacity), it has been more challenging for compounds excreted primarily as conjugates in bile. (S)-10, 11-Dihydro-3-[3-(pyridin-2-ylamino)-1-propyloxy]-5H-dibenzo[ a, d]cycloheptene-10-acetic acid (SB-265123) is a novel alphavbeta3 ("vitronectin receptor") antagonist. In this study, the in vivo pharmacokinetics and in vitro plasma protein binding of SB-265123 were examined in four species: mice, rats, dogs, and monkeys. In monkeys and dogs, SB-265123 exhibited moderate clearance, whereas low clearance (<20% hepatic blood flow) was observed in the rat, and high clearance (>70% hepatic blood flow) was seen in the mouse. The concentration-time profiles indicated the possibility of enterohepatic recirculation; subsequent studies in bile duct-cannulated rats demonstrated extensive biliary excretion of an acyl-glucuronide of SB-265123. In allometric scaling to predict the disposition of SB-265123 in humans, various standard correction factors were applied, including protein binding, maximum lifespan potential, and brain weight; each failed to produce adequate interspecies scaling of clearance (r(2) < 0.72). Consequently, a novel correction factor incorporating bile flow and microsomal UDP-glucuronosyltransferase activity in each species was applied, demonstrating substantial improvement in the correlation of the allometric plot (r(2) = 0.96). This study demonstrates a novel allometric correction that may be applicable to compounds that undergo conjugation and biliary excretion.


Subject(s)
Acetates/pharmacokinetics , Aminopyridines/pharmacokinetics , Receptors, Vitronectin/antagonists & inhibitors , Animals , Chromatography, High Pressure Liquid , Dogs , Macaca fascicularis , Male , Mass Spectrometry , Mice , Rats , Rats, Sprague-Dawley , Species Specificity
17.
J Med Chem ; 42(4): 545-59, 1999 Feb 25.
Article in English | MEDLINE | ID: mdl-10052962

ABSTRACT

Previously, we reported the direct design of highly potent nonpeptide 3-oxo-1,4-benzodiazepine fibrinogen receptor antagonists from a constrained, RGD-containing cyclic semipeptide. The critical features incorporated into the design of these nonpeptides were the exocyclic amide at the 8-position which overlaid the Arg carbonyl, the phenyl ring which maintained an extended Gly conformation, and the diazepine ring which mimicked the gamma-turn at Asp. In this paper, we investigate conformational preferences of the 8-substituted benzodiazepine analogues by examining structural modifications to both the exocyclic amide and the seven-membered diazepine ring and by studying the conformation of the benzodiazepine ring using molecular modeling, X-ray crystallography, and NMR. We found that the directionality of the amide at the 8-position had little effect on activity and the (E)-olefin analogue retained significant potency, indicating that the trans orientation of the amide, and not the carbonyl or NH groups, made the largest contribution to the observed activity. For the diazepine ring, with the exception of the closely analogous 3-oxo-2-benzazepine ring system described previously, all of the modifications led to a significant reduction in activity compared to the potent 3-oxo-1, 4-benzodiazepine parent ring system, implicating this particular type of ring system as a desirable structural feature for high potency. Energy minimizations of a number of the modified analogues revealed that none could adopt the same low-energy conformation as the one shared by the active (S)-isomer of the 3-oxo-1, 4-benzodiazepines and 3-oxo-2-benzazepines. The overall data suggest that the features contributing to the observed high potency in this series are the orientation of the 3-4 amide and the conformational constraint imposed by the seven-membered ring, both of which position the key acidic and basic groups in the proper spatial relationship.


Subject(s)
Benzodiazepines/chemical synthesis , Platelet Glycoprotein GPIIb-IIIa Complex/antagonists & inhibitors , Benzodiazepines/chemistry , Benzodiazepines/metabolism , Benzodiazepines/pharmacology , Crystallography, X-Ray , Humans , In Vitro Techniques , Magnetic Resonance Spectroscopy , Models, Molecular , Molecular Conformation , Platelet Aggregation/drug effects , Platelet Aggregation Inhibitors/chemical synthesis , Platelet Aggregation Inhibitors/chemistry , Platelet Aggregation Inhibitors/metabolism , Platelet Aggregation Inhibitors/pharmacology , Platelet Glycoprotein GPIIb-IIIa Complex/metabolism , Structure-Activity Relationship
18.
J Biol Chem ; 274(8): 4869-75, 1999 Feb 19.
Article in English | MEDLINE | ID: mdl-9988728

ABSTRACT

The natural product sordarin, a tetracyclic diterpene glycoside, selectively inhibits fungal protein synthesis by impairing the function of eukaryotic elongation factor 2 (eEF2). Sordarin and its derivatives bind to the eEF2-ribosome-nucleotide complex in sensitive fungi, stabilizing the post-translocational GDP form. We have previously described a class of Saccharomyces cerevisiae mutants that exhibit resistance to varying levels of sordarin and have identified amino acid substitutions in yeast eEF2 that confer sordarin resistance. We now report on a second class of sordarin-resistant mutants. Biochemical and molecular genetic analysis of these mutants demonstrates that sordarin resistance is dependent on the essential large ribosomal subunit protein L10e in S. cerevisiae. Five unique L10e alleles were characterized and sequenced, and several nucleotide changes that differ from the wild-type sequence were identified. Changes that result in the resistance phenotype map to 4 amino acid substitutions and 1 amino acid deletion clustered in a conserved 10-amino acid region of L10e. Like the previously identified eEF2 mutations, the mutant ribosomes show reduced sordarin-conferred stabilization of the eEF2-nucleotide-ribosome complex. To our knowledge, this report provides the first description of ribosomal protein mutations affecting translocation. These results and our previous observations with eEF2 suggest a functional linkage between L10e and eEF2.


Subject(s)
Antifungal Agents/pharmacology , Eukaryotic Initiation Factor-2/antagonists & inhibitors , Mutation , Phosphoproteins/genetics , Ribosomal Proteins/genetics , Saccharomyces cerevisiae/drug effects , Amino Acid Sequence , Base Sequence , Cloning, Molecular , DNA, Fungal , Drug Resistance, Microbial/genetics , Indenes , Molecular Sequence Data , Saccharomyces cerevisiae/genetics
19.
Am J Respir Crit Care Med ; 158(1): 12-7, 1998 Jul.
Article in English | MEDLINE | ID: mdl-9655700

ABSTRACT

Exogenous surfactant therapy is not standard in the acute respiratory distress syndrome (ARDS) because of a lack of proven benefit. Nonuniform surfactant distribution after either bolus or aerosol administration may be an important factor limiting response. In a previous study of acute lung injury, we demonstrated that lavage administration of Exosurf (13.5 mg phospholipid/ml) was both effective and distributed uniformly in the lungs. Since the endogenous surfactant pool is much smaller than the typical dose of exogenous surfactant administered, we hypothesized that dilute surfactant preparations (4-4.5 mg phospholipid/ml) administered by lung lavage would be equally effective in reversing pulmonary dysfunction in a piglet model of acute lung injury. We compared three dilute surfactants: Infasurf (n = 5), KL4-Surfactant (n = 6), and Exosurf (n = 5) with controls (n = 6) and undiluted Exosurf (13. 5 mg phospholipid/ml; n = 6). All dilute surfactant preparations were effective in improving oxygenation and other parameters of pulmonary function. Surfactant administered by lavage resulted in uniform lung distribution. We conclude that dilute surfactants administered by lung lavage are effective in reversing pulmonary dysfunction after acute lung injury. We speculate that doses in the range of 20-40 mg phospholipid/kg may be adequate to improve lung function in ARDS when exogenously administered surfactant is uniformly distributed in the lung.


Subject(s)
Lung Diseases/drug therapy , Phosphorylcholine , Pulmonary Surfactants/administration & dosage , Animals , Animals, Newborn , Bronchoalveolar Lavage , Disease Models, Animal , Drug Combinations , Fatty Alcohols/administration & dosage , Fatty Alcohols/therapeutic use , Intercellular Signaling Peptides and Proteins , Peptides/administration & dosage , Peptides/therapeutic use , Polyethylene Glycols/administration & dosage , Polyethylene Glycols/therapeutic use , Pulmonary Surfactants/therapeutic use , Respiratory Distress Syndrome , Swine
20.
J Pharmacol Exp Ther ; 285(1): 228-35, 1998 Apr.
Article in English | MEDLINE | ID: mdl-9536015

ABSTRACT

The aggregation of activated platelets is mediated by the binding of fibrinogen to its cell surface receptor, the integrin alphaIIbbeta3. The recognition of fibrinogen by alphaIIbbeta3 depends, in part, on the tripeptide sequence Arg-Gly-Asp (RGD) in the adhesive protein. The interactions of a cyclic RGD-containing pentapeptide, [3H]-SK&F-107260, and a 1,4-benzodiazepine-based nonpeptide [3H]-SB-214857, with purified alphaIIbbeta3 have been investigated. Both compounds potently inhibit platelet aggregation at submicromolar concentrations. Binding of both [3H]-SK&F-107260 (Kd = 1.19 nM) and [3H]-SB-214857 (Kd = 1.85 nM) to alphaIIbbeta3 is of high affinity and fully reversible. The binding is monophasic, indicating a single class of noncooperative binding sites. The two radioligands exhibited similar values in binding to alphaIIbbeta3 purified on an RGD-affinity column (Bmax = 0.2 mol/mol alphaIIbbeta3) or to alphaIIbbeta3 purified over a lentil lectin column (Bmax = 0.03 mol/mol alphaIIbbeta3), suggesting that SK&F-107260 and SB-214857 interact with the same population of receptors. Binding of [3H]-SK&F-107260 and [3H]-SB-214857 to alphaIIbbeta3 require divalent cations, Mg++, Ca++ and Mn++ are able to support binding, with Mn++ being the most effective. Thirteen alphaIIbbeta3 antagonists, including four linear and three cyclic RGD peptides, five peptidomimetics, the fibrinogen gamma-chain dodecapeptide (HHLGGAKQAGDV) and the snake venom protein, echistatin, complete for [3H]-SK&F-107260 or [3H]-SB-214857 binding to alphaIIbbeta3. The affinity constants (Ki) of these compounds, determined by the two radioligand binding assays, are similar. Furthermore, these compounds exhibit the same rank order of potency in inhibiting biotinylated-fibrinogen binding to alphaIIbbeta3. Scatchard plot analyses of the [3H]-SK&F-107260 binding isotherms in the presence of unlabeled SB-214857 and gamma-chain dodecapeptide reveal competitive-type antagonism, indicating that SB-214857, gamma-chain dodecapeptide and SK&F-107260 interact with mutually exclusive binding sites on alphaIIbbeta3.


Subject(s)
Blood Platelets/metabolism , Oligopeptides/metabolism , Peptides, Cyclic/metabolism , Platelet Aggregation Inhibitors/metabolism , Platelet Glycoprotein GPIIb-IIIa Complex/metabolism , Binding, Competitive , Cations, Divalent/metabolism , Dose-Response Relationship, Drug , Fibrinogen/metabolism , Humans , Intercellular Signaling Peptides and Proteins , Oligopeptides/pharmacology , Peptides/metabolism , Platelet Glycoprotein GPIIb-IIIa Complex/isolation & purification
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