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1.
Nat Aging ; 2(2): 105-114, 2022 02.
Article in English | MEDLINE | ID: mdl-37117756

ABSTRACT

Canonically, hormones are produced in the endocrine organs and delivered to target tissues. However, for steroids, the concept of tissue intracrinology, whereby hormones are produced in the tissues where they exert their effect without release into circulation, has been proposed, but its role in physiology/disease remains unclear. The meibomian glands in the eyelids produce oil to prevent tear evaporation, which reduces with aging. Here, we demonstrate that (re)activation of local intracrine activity through nicotinamide adenine dinucleotide (NAD+)-dependent circadian 3ß-hydroxyl-steroid dehydrogenase (3ß-HSD) activity ameliorates age-associated meibomian gland dysfunction and accompanying evaporative dry eye disease. Genetic ablation of 3ß-HSD nullified local steroidogenesis and led to atrophy of the meibomian gland. Conversely, reactivation of 3ß-HSD activity by boosting its coenzyme NAD+ availability improved glandular cell proliferation and alleviated the dry eye disease phenotype. Both women and men express 3ß-HSD in the meibomian gland. Enhancing local steroidogenesis may help combat age-associated meibomian gland dysfunction.


Subject(s)
Dry Eye Syndromes , Meibomian Gland Dysfunction , Female , Humans , NAD , Meibomian Glands , Tears/physiology , Steroids , Hormones
2.
Dev Cell ; 56(24): 3309-3320.e5, 2021 12 20.
Article in English | MEDLINE | ID: mdl-34932948

ABSTRACT

Maintaining genomic integrity and stability is crucial for life; yet, no tissue-driven mechanism that robustly safeguards the epithelial genome has been discovered. Epidermal stem cells (EpiSCs) continuously replenish the stratified layers of keratinocytes that protect organisms against various environmental stresses. To study the dynamics of DNA-damaged cells in tissues, we devised an in vivo fate tracing system for EpiSCs with DNA double-strand breaks (DSBs) and demonstrated that those cells exit from their niches. The clearance of EpiSCs with DSBs is caused by selective differentiation and delamination through the DNA damage response (DDR)-p53-Notch/p21 axis, with the downregulation of ITGB1. Moreover, concomitant enhancement of symmetric cell divisions of surrounding stem cells indicates that the selective elimination of cells with DSBs is coupled with the augmented clonal expansion of intact stem cells. These data collectively demonstrate that tissue autonomy through the dynamic coupling of cell-autonomous and non-cell-autonomous mechanisms coordinately maintains the genomic quality of the epidermis.


Subject(s)
Epidermis/metabolism , Genome , Stem Cells/cytology , Animals , Apoptosis/genetics , Cell Differentiation/genetics , Cell Division/genetics , Cell Proliferation/genetics , Clone Cells , DNA Breaks, Double-Stranded , DNA Damage/genetics , DNA Repair/genetics , Humans , Integrin beta1/metabolism , Mice, Inbred C57BL , Models, Biological , Receptors, Notch/metabolism , Signal Transduction/genetics , Stem Cell Niche , Stem Cells/metabolism
3.
Cell Rep ; 36(5): 109492, 2021 08 03.
Article in English | MEDLINE | ID: mdl-34348144

ABSTRACT

Early differential diagnosis between malignant and benign tumors and their underlying intrinsic differences are the most critical issues for life-threatening cancers. To study whether human acral melanomas, deadly cancers that occur on non-hair-bearing skin, have distinct origins that underlie their invasive capability, we develop fate-tracing technologies of melanocyte stem cells in sweat glands (glandular McSCs) and in melanoma models in mice and compare the cellular dynamics with human melanoma. Herein, we report that glandular McSCs self-renew to expand their migratory progeny in response to genotoxic stress and trauma to generate invasive melanomas in mice that mimic human acral melanomas. The analysis of melanocytic lesions in human volar skin reveals that genetically unstable McSCs expand in sweat glands and in the surrounding epidermis in melanomas but not in nevi. The detection of such cell spreading dynamics provides an innovative method for an early differential diagnosis of acral melanomas from nevi.


Subject(s)
Cell Movement , Melanoma/pathology , Nevus/pathology , Stem Cells/pathology , Animals , Cell Movement/radiation effects , Cell Proliferation/radiation effects , Cyclin D1/metabolism , Disease Models, Animal , Epidermis/pathology , Epidermis/radiation effects , Gene Amplification , Genomic Instability/radiation effects , Melanocytes/pathology , Melanocytes/radiation effects , Melanoma/diagnosis , Mice, Inbred C57BL , Risk Factors , Skin/pathology , Skin/radiation effects , Skin Pigmentation/radiation effects , Sweat Glands/radiation effects , Ultraviolet Rays
4.
Nature ; 595(7866): 266-271, 2021 07.
Article in English | MEDLINE | ID: mdl-34163066

ABSTRACT

Obesity is a worldwide epidemic that predisposes individuals to many age-associated diseases, but its exact effects on organ dysfunction are largely unknown1. Hair follicles-mini-epithelial organs that grow hair-are miniaturized by ageing to cause hair loss through the depletion of hair follicle stem cells (HFSCs)2. Here we report that obesity-induced stress, such as that induced by a high-fat diet (HFD), targets HFSCs to accelerate hair thinning. Chronological gene expression analysis revealed that HFD feeding for four consecutive days in young mice directed activated HFSCs towards epidermal keratinization by generating excess reactive oxygen species, but did not reduce the pool of HFSCs. Integrative analysis using stem cell fate tracing, epigenetics and reverse genetics showed that further feeding with an HFD subsequently induced lipid droplets and NF-κB activation within HFSCs via autocrine and/or paracrine IL-1R signalling. These integrated factors converge on the marked inhibition of Sonic hedgehog (SHH) signal transduction in HFSCs, thereby further depleting lipid-laden HFSCs through their aberrant differentiation and inducing hair follicle miniaturization and eventual hair loss. Conversely, transgenic or pharmacological activation of SHH rescued HFD-induced hair loss. These data collectively demonstrate that stem cell inflammatory signals induced by obesity robustly represses organ regeneration signals to accelerate the miniaturization of mini-organs, and suggests the importance of daily prevention of organ dysfunction.


Subject(s)
Alopecia/pathology , Alopecia/physiopathology , Hair Follicle/pathology , Obesity/physiopathology , Stem Cells/pathology , Animals , Autocrine Communication , Cell Count , Cell Differentiation , Cell Lineage , Cellular Senescence , Diet, High-Fat/adverse effects , Disease Models, Animal , Hedgehog Proteins/metabolism , Inflammation , Male , Mice , Mice, Inbred C57BL , Obesity/pathology , Oxidative Stress , Paracrine Communication , Receptors, Interleukin-1/metabolism
5.
Nat Commun ; 12(1): 1826, 2021 03 23.
Article in English | MEDLINE | ID: mdl-33758188

ABSTRACT

Somatic mutations of ASXL1 are frequently detected in age-related clonal hematopoiesis (CH). However, how ASXL1 mutations drive CH remains elusive. Using knockin (KI) mice expressing a C-terminally truncated form of ASXL1-mutant (ASXL1-MT), we examined the influence of ASXL1-MT on physiological aging in hematopoietic stem cells (HSCs). HSCs expressing ASXL1-MT display competitive disadvantage after transplantation. Nevertheless, in genetic mosaic mouse model, they acquire clonal advantage during aging, recapitulating CH in humans. Mechanistically, ASXL1-MT cooperates with BAP1 to deubiquitinate and activate AKT. Overactive Akt/mTOR signaling induced by ASXL1-MT results in aberrant proliferation and dysfunction of HSCs associated with age-related accumulation of DNA damage. Treatment with an mTOR inhibitor rapamycin ameliorates aberrant expansion of the HSC compartment as well as dysregulated hematopoiesis in aged ASXL1-MT KI mice. Our findings suggest that ASXL1-MT provokes dysfunction of HSCs, whereas it confers clonal advantage on HSCs over time, leading to the development of CH.


Subject(s)
Aging/genetics , Clonal Hematopoiesis/genetics , Hematopoiesis/genetics , Hematopoietic Stem Cells/metabolism , Repressor Proteins/genetics , TOR Serine-Threonine Kinases/metabolism , Aged , Aging/metabolism , Aging/physiology , Animals , Apoptosis/genetics , Cell Cycle/genetics , Cell Proliferation/genetics , Cells, Cultured , DNA Damage/drug effects , DNA Damage/genetics , Gene Knock-In Techniques , Hematopoiesis/physiology , Hematopoietic Stem Cell Transplantation , Hematopoietic Stem Cells/drug effects , Hematopoietic Stem Cells/physiology , Humans , Membrane Potential, Mitochondrial/drug effects , Membrane Potential, Mitochondrial/genetics , Mice , Mice, Transgenic , Mutation , Proto-Oncogene Proteins c-akt/metabolism , RNA-Seq , Reactive Oxygen Species/pharmacology , Repressor Proteins/metabolism , Signal Transduction/drug effects , Signal Transduction/genetics , Sirolimus/pharmacology , Tumor Suppressor Proteins/metabolism , Ubiquitin Thiolesterase/metabolism , Ubiquitination/drug effects , Ubiquitination/genetics
6.
Nat Aging ; 1(2): 190-204, 2021 02.
Article in English | MEDLINE | ID: mdl-37118636

ABSTRACT

Hair follicles, mammalian mini-organs that grow hair, miniaturize during aging, leading to hair thinning and loss. Here we report that hair follicle stem cells (HFSCs) lose their regenerative capabilities during aging owing to the adoption of an atypical cell division program. Cell fate tracing and cell division axis analyses revealed that while HFSCs in young mice undergo typical symmetric and asymmetric cell divisions to regenerate hair follicles, upon aging or stress, they adopt an atypical 'stress-responsive' type of asymmetric cell division. This type of division is accompanied by the destabilization of hemidesmosomal protein COL17A1 and cell polarity protein aPKCλ and generates terminally differentiating epidermal cells instead of regenerating the hair follicle niche. With the repetition of these atypical divisions, HFSCs detach from the basal membrane causing their exhaustion, elimination and organ aging. The experimentally induced stabilization of COL17A1 rescued organ homeostasis through aPKCλ stabilization. These results demonstrate that distinct stem cell division programs may govern tissue and organ aging.


Subject(s)
Hair Follicle , Stem Cells , Animals , Mice , Cell Division , Hair , Mammals , Regeneration , Aging
7.
Nature ; 568(7752): 344-350, 2019 04.
Article in English | MEDLINE | ID: mdl-30944469

ABSTRACT

Stem cells underlie tissue homeostasis, but their dynamics during ageing-and the relevance of these dynamics to organ ageing-remain unknown. Here we report that the expression of the hemidesmosome component collagen XVII (COL17A1) by epidermal stem cells fluctuates physiologically through genomic/oxidative stress-induced proteolysis, and that the resulting differential expression of COL17A1 in individual stem cells generates a driving force for cell competition. In vivo clonal analysis in mice and in vitro 3D modelling show that clones that express high levels of COL17A1, which divide symmetrically, outcompete and eliminate adjacent stressed clones that express low levels of COL17A1, which divide asymmetrically. Stem cells with higher potential or quality are thus selected for homeostasis, but their eventual loss of COL17A1 limits their competition, thereby causing ageing. The resultant hemidesmosome fragility and stem cell delamination deplete adjacent melanocytes and fibroblasts to promote skin ageing. Conversely, the forced maintenance of COL17A1 rescues skin organ ageing, thereby indicating potential angles for anti-ageing therapeutic intervention.


Subject(s)
Homeostasis , Skin Aging/pathology , Skin Aging/physiology , Skin/cytology , Skin/pathology , Stem Cells/cytology , Stem Cells/pathology , Animals , Atrophy , Autoantigens/chemistry , Autoantigens/metabolism , Cell Division , Cell Proliferation , Clone Cells/cytology , Epidermal Cells/cytology , Epidermal Cells/pathology , Female , Genome , Hemidesmosomes/pathology , Male , Mice , Mice, Inbred C57BL , Models, Animal , Non-Fibrillar Collagens/chemistry , Non-Fibrillar Collagens/metabolism , Oxidative Stress , Proteolysis , Collagen Type XVII
8.
Biochem Biophys Res Commun ; 501(4): 893-897, 2018 07 02.
Article in English | MEDLINE | ID: mdl-29763605

ABSTRACT

Previous studies have shown that androgenic alopecia is associated with metabolic syndrome and diabetes. However, the detailed mechanism whereby diabetes causes alopecia still remains unclear. We focused on the inflammatory response that is caused by diabetes or obesity, given that inflammation is a risk factor for hair loss. Inducible nitric oxide synthase (iNOS) is known to be upregulated under conditions of acute or chronic inflammation. To clarify the potential role of iNOS in diabetes-related alopecia, we generated obese diabetic iNOS-deficient (ob/ob; iNOS-KO mice). We observed that ob/ob; iNOS-KO mice were potentiated for the transition from telogen (rest phase) to anagen (growth phase) in the hair cycle compared with iNOS-proficient ob/ob mice. To determine the effect of nitric oxide (NO) on the hair cycle, we administered an iNOS inhibitor intraperitoneally (compound 1400 W, 10 mg/kg) or topically (10% aminoguanidine) in ob/ob mice. We observed that iNOS inhibitors promoted anagen transition in ob/ob mice. Next, we administered an NO donor (S-nitrosoglutathione, GSNO), to test whether NO has the telogen elongation effects. The NO donor was sufficient to induce telogen elongation in wild-type mice. Together, our data indicate that iNOS-derived NO plays a role in telogen elongation under the inflammatory conditions associated with diabetes in mice.


Subject(s)
Diabetes Mellitus, Experimental/enzymology , Diabetes Mellitus, Experimental/physiopathology , Hair/physiopathology , Nitric Oxide Synthase Type II/metabolism , Obesity/physiopathology , Regeneration , Administration, Topical , Animals , Enzyme Inhibitors/administration & dosage , Enzyme Inhibitors/pharmacology , Hair/drug effects , Hair/enzymology , Hair/growth & development , Injections, Intraperitoneal , Male , Mice, Inbred C57BL , Mice, Knockout , Mice, Obese , Nitric Oxide Synthase Type II/antagonists & inhibitors , RNA, Messenger/genetics , RNA, Messenger/metabolism , Regeneration/drug effects , S-Nitrosoglutathione/metabolism
9.
Science ; 351(6273): aad4395, 2016 Feb 05.
Article in English | MEDLINE | ID: mdl-26912707

ABSTRACT

Hair thinning and loss are prominent aging phenotypes but have an unknown mechanism. We show that hair follicle stem cell (HFSC) aging causes the stepwise miniaturization of hair follicles and eventual hair loss in wild-type mice and in humans. In vivo fate analysis of HFSCs revealed that the DNA damage response in HFSCs causes proteolysis of type XVII collagen (COL17A1/BP180), a critical molecule for HFSC maintenance, to trigger HFSC aging, characterized by the loss of stemness signatures and by epidermal commitment. Aged HFSCs are cyclically eliminated from the skin through terminal epidermal differentiation, thereby causing hair follicle miniaturization. The aging process can be recapitulated by Col17a1 deficiency and prevented by the forced maintenance of COL17A1 in HFSCs, demonstrating that COL17A1 in HFSCs orchestrates the stem cell-centric aging program of the epithelial mini-organ.


Subject(s)
Alopecia/metabolism , Cellular Senescence/physiology , Hair Follicle/pathology , Non-Fibrillar Collagens/deficiency , Proteolysis , Stem Cells/pathology , Aged , Aging/metabolism , Aging/pathology , Alopecia/genetics , Alopecia/pathology , Animals , Autoantigens/genetics , Cell Differentiation , Cellular Senescence/genetics , DNA Damage , Desmosomes/metabolism , Desmosomes/pathology , Female , Genomic Instability , Hair Follicle/metabolism , Humans , Male , Mice , Mice, Inbred C57BL , Mice, Knockout , Middle Aged , Non-Fibrillar Collagens/genetics , Stem Cells/metabolism , Collagen Type XVII
10.
Nucleic Acids Res ; 43(14): 6692-700, 2015 Aug 18.
Article in English | MEDLINE | ID: mdl-26130712

ABSTRACT

DNA has recently emerged as a promising material for the construction of nanosized architectures. Chemically modified DNA has been suggested to be an important component of such architectural building blocks. We have designed and synthesized a novel H-shaped DNA oligonucleotide dimer that is cross-linked with a structurally rigid linker composed of phenylene and ethynylene groups. A rotatable DNA unit was constructed through the self-assembly of this H-shaped DNA component and two complementary DNA oligonucleotides. In addition to the rotatable unit, a locked DNA unit containing two H-shaped DNA components was also constructed. As an example of an extended locked structure, a hexagonal DNA origami dimer and oligomer were constructed by using H-shaped DNA as linkers.


Subject(s)
DNA/chemistry , Nanostructures/chemistry , DNA/chemical synthesis , Models, Molecular , Nanostructures/ultrastructure , Nanotechnology
11.
Nihon Rinsho ; 73 Suppl 5: 243-7, 2015 Jun.
Article in Japanese | MEDLINE | ID: mdl-30457806
12.
Chemistry ; 20(5): 1223-5, 2014 Jan 27.
Article in English | MEDLINE | ID: mdl-24375721

ABSTRACT

Charge transfer through DNA is of great interest because of the potential of DNA to be a building block for nanoelectronic sensors and devices. The photochemical reaction of 5-halouracil has been used for probing charge-transfer processes along DNA. We previously reported on unique charge transfer following photochemical reaction of 5-bromouracil within four-base π-stacks in Z-DNA. In this study, we incorporated a guanosine instead of a deoxyguanosine into Z-DNA, and found that electron transfer occurs in a different mechanism through four-base π-stacks.


Subject(s)
Carbohydrates/chemistry , DNA, Z-Form/chemistry , Deoxyguanosine/chemistry , Ribonucleotides/chemistry , Bromouracil/chemistry , Electron Transport , Electrons , Quantum Theory , Ultraviolet Rays
13.
Chemistry ; 20(3): 752-9, 2014 Jan 13.
Article in English | MEDLINE | ID: mdl-24339258

ABSTRACT

Pyrrole-imidazole (PI) polyamides bind to the minor groove of the DNA duplex in a sequence-specific manner and thus have the potential to regulate gene expression. To date, various types of PI polyamides have been designed as sequence-specific DNA binding ligands. One of these, cysteine cyclic PI polyamides containing two ß-alanine molecules, were designed to recognize a 7 bp DNA sequence with high binding affinity. In this study, an efficient cyclization reaction between a cysteine and a chloroacetyl residue was used for dimerization in the synthesis of a unit that recognizes symmetrical DNA sequences. To evaluate specific DNA binding properties, dimeric PI polyamide binding was measured by using a surface plasmon resonance (SPR) method. Extending this molecular design, we synthesized a large dimeric PI polyamide that can recognize a 14 bp region in duplex DNA.


Subject(s)
Cysteine/chemistry , DNA/metabolism , Imidazoles/chemistry , Nylons/chemistry , Pyrroles/chemistry , Base Sequence , DNA/chemistry , Dimerization , Nucleic Acid Conformation , Nylons/chemical synthesis , Surface Plasmon Resonance
14.
Biomater Sci ; 2(3): 297-307, 2014 Mar 03.
Article in English | MEDLINE | ID: mdl-32481858

ABSTRACT

Sequence-specific DNA-binding modules, N-methylpyrrole (Py)-N-methylimidazole-(Im) polyamides have been recently conjugated with fluorophores, and some of these conjugates could be used for the detection of specific DNA sequences. In this study, we synthesized two Py-Im polyamides 1 and 2, which interact with the 145-bp nucleosome positioning sequence 601. We conjugated the cyanine dye Cy3 or Cy5 with 1 or 2. In the absence of target DNA, the fluorescent conjugate of a Py-Im polyamide had lower fluorescence intensity compared with Cy3 or Cy5 alone. In the presence of either the target DNA or the nucleosome, the fluorescence intensity of the conjugates increased. Furthermore, we observed a Förster resonance energy transfer between the Cy3-Py-Im polyamide and the Cy5-Py-Im polyamide on the nucleosome. These results open up the possibilities that fluorescent conjugates of Py-Im polyamides can be used for characterization of the dynamic interactions within protein-DNA complexes.

16.
Bioorg Med Chem ; 21(17): 5436-41, 2013 Sep 01.
Article in English | MEDLINE | ID: mdl-23810670

ABSTRACT

N-Methylpyrrole (Py)-N-methylimidazole (Im) polyamides are small organic molecules that can recognize predetermined DNA sequences with high sequence specificity. As many eukaryotic promoter regions contain highly GC-rich sequences, it is valuable to synthesize and characterize Py-Im polyamides that recognize GC-rich motifs. In this study, we synthesized four hairpin Py-Im polyamides 1-4, which recognize 5'-GCGC-3' and investigated their binding behavior with surface plasmon resonance assay. Py-Im polyamides 2-4 contain two, one, and one ß-alanine units, replacing the Py units of 1, respectively. The binding affinities of 2-4 to the target DNA increased 430, 390, and 610-fold, respectively, over that of 1. The association and dissociation rates of 2 to the target DNA were improved by 11 and 37-fold, respectively, compared with those of 1. Interestingly, the association and dissociation rates of 3 and 4 were higher than those of 2, even though the binding affinities of 2, 3, and 4 to the target DNA were comparable to each other. The binding affinity of 2 to DNA with a 2bp mismatch was reduced by 29-fold, compared with that to the matched DNA. Moreover, the binding affinities of 3 and 4 to the same mismatched DNA were reduced by 270 and 110-fold, respectively, indicating that 3 and 4 have greater specificities than 2 and are suitable as DNA-binding modules for engineered epigenetic regulation.


Subject(s)
DNA/metabolism , Imidazoles/chemistry , Nylons/chemistry , Pyrroles/chemistry , beta-Alanine/chemistry , Base Pair Mismatch , Base Sequence , DNA/chemistry , Nucleic Acid Conformation , Nylons/chemical synthesis , Surface Plasmon Resonance
17.
Nucleic Acids Res ; 41(8): 4724-8, 2013 Apr.
Article in English | MEDLINE | ID: mdl-23439569

ABSTRACT

Electron transfer in DNA has been intensively studied to elucidate its biological roles and for applications in bottom-up DNA nanotechnology. Recently, mechanisms of electron transfer to DNA have been investigated; however, most of the systems designed are intramolecular. Here, we synthesized pyrene-conjugated pyrrole-imidazole polyamides (PPIs) to achieve sequence-specific electron injection into DNA in an intermolecular fashion. Electron injection from PPIs into DNA was detected using 5-bromouracil as an electron acceptor. Twelve different 5-bromouracil-containing oligomers were synthesized to examine the electron-injection ability of PPI. Product analysis demonstrated that the electron transfer from PPIs was localized in a range of 8 bp from the binding site of the PPIs. These results demonstrate that PPIs can be a useful tool for sequence-specific electron injection.


Subject(s)
DNA/chemistry , Electrons , Nylons/chemistry , Base Sequence , Bromouracil/chemistry , DNA/radiation effects , Imidazoles/chemistry , Nylons/chemical synthesis , Pyrenes/chemistry , Pyrroles/chemistry
18.
Photochem Photobiol ; 89(3): 649-54, 2013.
Article in English | MEDLINE | ID: mdl-23331297

ABSTRACT

The UVA is currently thought to be carcinogenic because, similar to UVB, it induces the formation of cyclobutane pyrimidine dimers (CPDs). Various drugs have been reported to cause photosensitive drug eruptions as an adverse effect. Although the precise mechanism of photosensitive drug eruption remains to be elucidated, it is generally accepted that free radicals and other reactive molecules generated via UV-irradiated drugs play important roles in the pathogenesis of photosensitive drug eruptions. The waveband of concern for photo-reactive drugs is UVA-visible light, but some extend into the UVB region. We tested whether photosensitive drugs could enhance CPD formation after UVA exposure by using isolated DNA in the presence of several reported photosensitive drugs using high-performance liquid chromatography. We found that the diuretic agent hydrochlorothiazide (HCT) significantly enhanced the production of TT dimers over a wide range of UVA. Furthermore, we investigated whether UVA plus HCT could enhance CPD production in xeroderma pigmentosum model mice defective in nucleotide excision repair. Immunofluorescence studies showed that CPD formation in the skin significantly increased after 365 nm narrow-band UVA irradiation in the presence of HCT, compared with that in wild-type mice. HCT could be used with caution because of its enhancement of UVA-induced DNA damage.


Subject(s)
DNA Repair/genetics , DNA/chemistry , Diuretics/adverse effects , Hydrochlorothiazide/adverse effects , Photosensitizing Agents/adverse effects , Pyrimidine Dimers/biosynthesis , Skin/drug effects , Xeroderma Pigmentosum/chemistry , Animals , DNA/metabolism , DNA Damage , Disease Models, Animal , Diuretics/chemistry , Hydrochlorothiazide/chemistry , Mice , Mice, Knockout , Photosensitizing Agents/chemistry , Pyrimidine Dimers/chemistry , Skin/chemistry , Skin/pathology , Skin/radiation effects , Ultraviolet Rays/adverse effects , Xeroderma Pigmentosum/genetics , Xeroderma Pigmentosum/pathology
19.
Bioorg Med Chem ; 21(2): 466-9, 2013 Jan 15.
Article in English | MEDLINE | ID: mdl-23266180

ABSTRACT

5-Bromouracil ((Br)U) was incorporated into three types of synthetic RNA and the products of the photoirradiated (Br)U-containing RNAs were investigated using HPLC and MS analysis. The photoirradiation of r(GCA(Br)UGC)(2) and r(CGAA(Br)UUGC)/r(GCAAUUCG) in A-form RNA produced the corresponding 2'-keto adenosine ((keto)A) product at the 5'-neighboring nucleotide, such as r(GC(keto)AUGC) and r(CGA(keto)AUUGC), respectively. The photoirradiation of r(CGCG(Br)UGCG)/r(C(m)GCAC(m)GCG) in Z-form RNA produced the 2'-keto guanosine ((keto)G) product r(CGC(keto)GUGCG), whereas almost no products were observed from the photoirradiation of r(CGCG(Br)UGCG)/r(C(m)GCAC(m)GCG) in A-form RNA. The present results indicate clearly that hydrogen (H) abstraction by the photochemically generated uracil-5-yl radical selectively occurs at the C2' position to provide a 2'-keto RNA product.


Subject(s)
Bromouracil/chemistry , RNA/chemistry , Chromatography, High Pressure Liquid , Light , RNA/chemical synthesis , RNA/metabolism , Spectrometry, Mass, Electrospray Ionization
20.
Nucleic Acids Res ; 40(22): 11510-7, 2012 Dec.
Article in English | MEDLINE | ID: mdl-23042247

ABSTRACT

N-methylpyrrole (Py)-N-methylimidazole (Im) polyamides are small organic molecules that bind to DNA with sequence specificity and can be used as synthetic DNA-binding ligands. In this study, five hairpin eight-ring Py-Im polyamides 1-5 with different number of Im rings were synthesized, and their binding behaviour was investigated with surface plasmon resonance assay. It was found that association rate (k(a)) of the Py-Im polyamides with their target DNA decreased with the number of Im in the Py-Im polyamides. The structures of four-ring Py-Im polyamides derived from density functional theory revealed that the dihedral angle of the Py amide carbonyl is 14∼18°, whereas that of the Im is significantly smaller. As the minor groove of DNA has a helical structure, planar Py-Im polyamides need to change their conformation to fit it upon binding to the minor groove. The data explain that an increase in planarity of Py-Im polyamide induced by the incorporation of Im reduces the association rate of Py-Im polyamides. This fundamental knowledge of the binding of Py-Im polyamides to DNA will facilitate the design of hairpin Py-Im polyamides as synthetic DNA-binding modules.


Subject(s)
DNA/chemistry , Imidazoles/chemistry , Nylons/chemistry , Pyrroles/chemistry , Models, Molecular , Nucleic Acid Conformation , Nylons/chemical synthesis , Surface Plasmon Resonance , Torsion, Mechanical
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