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1.
Circ Res ; 135(1): 60-75, 2024 Jun 21.
Article in English | MEDLINE | ID: mdl-38770652

ABSTRACT

BACKGROUND: Pathogenic concepts of right ventricular (RV) failure in pulmonary arterial hypertension focus on a critical loss of microvasculature. However, the methods underpinning prior studies did not take into account the 3-dimensional (3D) aspects of cardiac tissue, making accurate quantification difficult. We applied deep-tissue imaging to the pressure-overloaded RV to uncover the 3D properties of the microvascular network and determine whether deficient microvascular adaptation contributes to RV failure. METHODS: Heart sections measuring 250-µm-thick were obtained from mice after pulmonary artery banding (PAB) or debanding PAB surgery and properties of the RV microvascular network were assessed using 3D imaging and quantification. Human heart tissues harvested at the time of transplantation from pulmonary arterial hypertension cases were compared with tissues from control cases with normal RV function. RESULTS: Longitudinal 3D assessment of PAB mouse hearts uncovered complex microvascular remodeling characterized by tortuous, shorter, thicker, highly branched vessels, and overall preserved microvascular density. This remodeling process was reversible in debanding PAB mice in which the RV function recovers over time. The remodeled microvasculature tightly wrapped around the hypertrophied cardiomyocytes to maintain a stable contact surface to cardiomyocytes as an adaptation to RV pressure overload, even in end-stage RV failure. However, microvasculature-cardiomyocyte contact was impaired in areas with interstitial fibrosis where cardiomyocytes displayed signs of hypoxia. Similar to PAB animals, microvascular density in the RV was preserved in patients with end-stage pulmonary arterial hypertension, and microvascular architectural changes appeared to vary by etiology, with patients with pulmonary veno-occlusive disease displaying a lack of microvascular complexity with uniformly short segments. CONCLUSIONS: 3D deep tissue imaging of the failing RV in PAB mice, pulmonary hypertension rats, and patients with pulmonary arterial hypertension reveals complex microvascular changes to preserve the microvascular density and maintain a stable microvascular-cardiomyocyte contact. Our studies provide a novel framework to understand microvascular adaptation in the pressure-overloaded RV that focuses on cell-cell interaction and goes beyond the concept of capillary rarefaction.


Subject(s)
Hypertension, Pulmonary , Imaging, Three-Dimensional , Mice, Inbred C57BL , Animals , Humans , Mice , Hypertension, Pulmonary/physiopathology , Hypertension, Pulmonary/diagnostic imaging , Hypertension, Pulmonary/etiology , Hypertension, Pulmonary/pathology , Male , Heart Ventricles/physiopathology , Heart Ventricles/diagnostic imaging , Heart Ventricles/pathology , Microvessels/physiopathology , Microvessels/diagnostic imaging , Microvessels/pathology , Vascular Remodeling , Pulmonary Artery/physiopathology , Pulmonary Artery/diagnostic imaging , Pulmonary Artery/pathology , Ventricular Dysfunction, Right/physiopathology , Ventricular Dysfunction, Right/etiology , Ventricular Dysfunction, Right/diagnostic imaging , Ventricular Function, Right , Ventricular Remodeling , Disease Models, Animal , Myocytes, Cardiac/pathology
2.
iScience ; 27(4): 109259, 2024 Apr 19.
Article in English | MEDLINE | ID: mdl-38510125

ABSTRACT

Fragile X syndrome (FXS) is caused by the loss of fragile X messenger ribonucleoprotein (FMRP), a translational regulator that binds the transcripts of proteins involved in synaptic function and plasticity. Dysregulated protein synthesis is a central effect of FMRP loss, however, direct translational modulation has not been leveraged in the treatment of FXS. Thus, we examined the effect of the translational modulator integrated stress response inhibitor (ISRIB) in treating synaptic and behavioral symptoms of FXS. We show that FMRP loss dysregulates synaptic protein abundance, stabilizing dendritic spines through increased PSD-95 levels while preventing spine maturation through reduced glutamate receptor accumulation, thus leading to the formation of dense, immature dendritic spines, characteristic of FXS patients and Fmr1 knockout (KO) mice. ISRIB rescues these deficits and improves social recognition in Fmr1 KO mice. These findings highlight the therapeutic potential of targeting core translational mechanisms in FXS and neurodevelopmental disorders more broadly.

3.
J Vis Exp ; (205)2024 Mar 01.
Article in English | MEDLINE | ID: mdl-38497657

ABSTRACT

The delivery of intravenously administered cancer therapeutics to brain tumors is limited by the blood-brain barrier. A method to directly image the accumulation and distribution of macromolecules in brain tumors in vivo would greatly enhance our ability to understand and optimize drug delivery in preclinical models. This protocol describes a method for real-time in vivo tracking of intravenously administered fluorescent-labeled nanoparticles with two-photon intravital microscopy (2P-IVM) in a mouse model of glioblastoma (GBM). The protocol contains a multi-step description of the procedure, including anesthesia and analgesia of experimental animals, creating a cranial window, GBM cell implantation, placing a head bar, conducting 2P-IVM studies, and post-surgical care for long-term follow-up studies. We show representative 2P-IVM imaging sessions and image analysis, examine the advantages and disadvantages of this technology, and discuss potential applications. This method can be easily modified and adapted for different research questions in the field of in vivo preclinical brain imaging.


Subject(s)
Brain Neoplasms , Glioblastoma , Animals , Mice , Glioblastoma/diagnostic imaging , Disease Models, Animal , Brain , Brain Neoplasms/diagnostic imaging , Intravital Microscopy
4.
J Comp Physiol B ; 2024 Feb 24.
Article in English | MEDLINE | ID: mdl-38396062

ABSTRACT

Individuals with neurodevelopmental disorders experience persistent sleep deficits, and there is increasing evidence that sleep dysregulation is an underlying cause, rather than merely an effect, of the synaptic and behavioral defects observed in these disorders. At the molecular level, dysregulation of the synaptic proteome is a common feature of neurodevelopmental disorders, though the mechanism connecting these molecular and behavioral phenotypes is an ongoing area of investigation. A role for eIF2α in shifting the local proteome in response to changes in the conditions at the synapse has emerged. Here, we discuss recent progress in characterizing the intersection of local synaptic translation and sleep and propose a reciprocal mechanism of dysregulation in the development of synaptic plasticity defects in neurodevelopmental disorders.

5.
Cureus ; 15(7): e41687, 2023 Jul.
Article in English | MEDLINE | ID: mdl-37575810

ABSTRACT

Drug reaction with eosinophilia and systemic symptoms (DRESS) is a severe drug reaction that is triggered several weeks after the start of a new medication. This syndrome presents with a variety of clinical symptoms, specifically a manifestation involving a fever followed by a severe rash. A variety of medications are known to trigger DRESS, with the most common being anticonvulsants and allopurinol. Here, we discuss the case of a medication, apalutamide, that caused DRESS in our patient. Early recognition and abrupt discontinuation of the medication is required for the management of this syndrome and to minimize morbidity and mortality.

6.
Sleep Med Rev ; 63: 101616, 2022 06.
Article in English | MEDLINE | ID: mdl-35381445

ABSTRACT

Neurological disorders encompass an extremely broad range of conditions, including those that present early in development and those that progress slowly or manifest with advanced age. Although these disorders have distinct underlying etiologies, the activation of shared pathways, e.g., integrated stress response (ISR) and the development of shared phenotypes (sleep deficits) may offer clues toward understanding some of the mechanistic underpinnings of neurologic dysfunction. While it is incontrovertibly complex, the relationship between sleep and persistent stress in the brain has broad implications in understanding neurological disorders from development to degeneration. The convergent nature of the ISR could be a common thread linking genetically distinct neurological disorders through the dysregulation of a core cellular homeostasis pathway.


Subject(s)
Nervous System Diseases , Humans , Sleep
7.
Science ; 375(6583): eabh3021, 2022 02 25.
Article in English | MEDLINE | ID: mdl-35201886

ABSTRACT

Sleep quality declines with age; however, the underlying mechanisms remain elusive. We found that hyperexcitable hypocretin/orexin (Hcrt/OX) neurons drive sleep fragmentation during aging. In aged mice, Hcrt neurons exhibited more frequent neuronal activity epochs driving wake bouts, and optogenetic activation of Hcrt neurons elicited more prolonged wakefulness. Aged Hcrt neurons showed hyperexcitability with lower KCNQ2 expression and impaired M-current, mediated by KCNQ2/3 channels. Single-nucleus RNA-sequencing revealed adaptive changes to Hcrt neuron loss in the aging brain. Disruption of Kcnq2/3 genes in Hcrt neurons of young mice destabilized sleep, mimicking aging-associated sleep fragmentation, whereas the KCNQ-selective activator flupirtine hyperpolarized Hcrt neurons and rejuvenated sleep architecture in aged mice. Our findings demonstrate a mechanism underlying sleep instability during aging and a strategy to improve sleep continuity.


Subject(s)
Aging , Neurons/physiology , Orexins/physiology , Sleep Deprivation/physiopathology , Sleep , Wakefulness , Aminopyridines/pharmacology , Animals , CRISPR-Cas Systems , Electroencephalography , Electromyography , Female , Hypothalamic Area, Lateral/physiopathology , KCNQ2 Potassium Channel/genetics , KCNQ2 Potassium Channel/metabolism , KCNQ3 Potassium Channel/genetics , KCNQ3 Potassium Channel/metabolism , Male , Mice , Narcolepsy/genetics , Narcolepsy/physiopathology , Nerve Tissue Proteins/genetics , Nerve Tissue Proteins/metabolism , Neural Pathways , Optogenetics , Patch-Clamp Techniques , RNA-Seq , Sleep Quality
8.
Curr Opin Neurobiol ; 71: 44-51, 2021 12.
Article in English | MEDLINE | ID: mdl-34583217

ABSTRACT

All animals carefully studied sleep, suggesting that sleep as a behavioral state exists in all animal life. Such evolutionary maintenance of an otherwise vulnerable period of environmental detachment suggests that sleep must be integral in fundamental biological needs. Despite over a century of research, the knowledge of what sleep does at the tissue, cellular or molecular levels remain cursory. Currently, sleep is defined based on behavioral criteria and physiological measures rather than at the cellular or molecular level. Physiologically, sleep has been described as two main states, non-rapid eye moment (NREM) and REM/paradoxical sleep (PS), which are defined in the neocortex by synchronous oscillations and paradoxical wake-like activity, respectively. For decades, these two sleep states were believed to be defining characteristics of only mammalian and avian sleep. Recent work has revealed slow oscillation, silencing, and paradoxical/REM-like activities in reptiles, fish, flies, worms, and cephalopods suggesting that these sleep dynamics and associated physiological states may have emerged early in animal evolution. Here, we discuss these recent developments supporting the conservation of neural dynamics (silencing, oscillation, paradoxical activity) of sleep states across phylogeny.


Subject(s)
Neocortex , Sleep, REM , Animals , Electroencephalography , Mammals , Phylogeny , Sleep/physiology , Sleep, REM/physiology , Wakefulness/physiology
9.
Nature ; 571(7764): 198-204, 2019 07.
Article in English | MEDLINE | ID: mdl-31292557

ABSTRACT

Slow-wave sleep and rapid eye movement (or paradoxical) sleep have been found in mammals, birds and lizards, but it is unclear whether these neuronal signatures are found in non-amniotic vertebrates. Here we develop non-invasive fluorescence-based polysomnography for zebrafish, and show-using unbiased, brain-wide activity recording coupled with assessment of eye movement, muscle dynamics and heart rate-that there are at least two major sleep signatures in zebrafish. These signatures, which we term slow bursting sleep and propagating wave sleep, share commonalities with those of slow-wave sleep and paradoxical or rapid eye movement sleep, respectively. Further, we find that melanin-concentrating hormone signalling (which is involved in mammalian sleep) also regulates propagating wave sleep signatures and the overall amount of sleep in zebrafish, probably via activation of ependymal cells. These observations suggest that common neural signatures of sleep may have emerged in the vertebrate brain over 450 million years ago.


Subject(s)
Neurons/physiology , Sleep/physiology , Zebrafish/physiology , Animals , Biological Evolution , Brain/cytology , Brain/drug effects , Brain/physiology , Brain/physiopathology , Ependyma/cytology , Eye Movements , Fluorescence , Heart Rate , Hypnotics and Sedatives/pharmacology , Hypothalamic Hormones/metabolism , Melanins/metabolism , Neurons/drug effects , Pigmentation/physiology , Pituitary Hormones/metabolism , Polysomnography/methods , Sleep/drug effects , Sleep Deprivation/physiopathology , Sleep, REM/drug effects , Sleep, REM/physiology , Sleep, Slow-Wave/drug effects , Sleep, Slow-Wave/physiology
10.
Curr Biol ; 29(12): R585-R588, 2019 06 17.
Article in English | MEDLINE | ID: mdl-31211981

ABSTRACT

A novel potential role of sleep is neuronal DNA repair. Live imaging of chromosome dynamics in zebrafish neurons has uncovered how sleep can repair DNA breaks accumulated during wake to maintain genome integrity and likely slow down neuronal aging.


Subject(s)
Neurons , Sleep , Animals , Chromosomes , DNA Damage , DNA Repair
11.
Cancer Discov ; 7(10): 1184-1199, 2017 10.
Article in English | MEDLINE | ID: mdl-28790031

ABSTRACT

Pancreatic ductal adenocarcinoma (PDAC) is one of the most metastatic and deadly cancers. Despite the clinical significance of metastatic spread, our understanding of molecular mechanisms that drive PDAC metastatic ability remains limited. By generating a genetically engineered mouse model of human PDAC, we uncover a transient subpopulation of cancer cells with exceptionally high metastatic ability. Global gene expression profiling and functional analyses uncovered the transcription factor BLIMP1 as a driver of PDAC metastasis. The highly metastatic PDAC subpopulation is enriched for hypoxia-induced genes, and hypoxia-mediated induction of BLIMP1 contributes to the regulation of a subset of hypoxia-associated gene expression programs. These findings support a model in which upregulation of BLIMP1 links microenvironmental cues to a metastatic stem cell character.Significance: PDAC is an almost uniformly lethal cancer, largely due to its tendency for metastasis. We define a highly metastatic subpopulation of cancer cells, uncover a key transcriptional regulator of metastatic ability, and define hypoxia as an important factor within the tumor microenvironment that increases metastatic proclivity. Cancer Discov; 7(10); 1184-99. ©2017 AACR.See related commentary by Vakoc and Tuveson, p. 1067This article is highlighted in the In This Issue feature, p. 1047.


Subject(s)
Carcinoma, Pancreatic Ductal/pathology , Gene Expression Profiling/methods , Pancreatic Neoplasms/pathology , Positive Regulatory Domain I-Binding Factor 1/genetics , Sequence Analysis, RNA/methods , Up-Regulation , Animals , Carcinoma, Pancreatic Ductal/genetics , Cell Hypoxia , Cell Line, Tumor , Gene Expression Regulation, Neoplastic , Genetic Engineering , Humans , Mice , Neoplasm Metastasis , Neoplasm Transplantation , Pancreatic Neoplasms/genetics , Tumor Microenvironment
12.
Mol Neurobiol ; 54(8): 6581-6597, 2017 Oct.
Article in English | MEDLINE | ID: mdl-27734337

ABSTRACT

Sleep is tightly regulated by the circadian clock and homeostatic mechanisms. Although the sleep/wake cycle is known to be associated with structural and physiological synaptic changes that benefit the brain, the function of sleep is still debated. The hypothalamic hypocretin/orexin (Hcrt) neurons regulate various functions including feeding, reward, sleep, and wake. Continuous imaging of single neuronal circuits in live animals is vital to understanding the role of sleep in regulating synaptic dynamics, and the transparency of the zebrafish model enables time-lapse imaging of single synapses during both day and night. Here, we use the gephyrin (Gphnb) protein, a central inhibitory synapse organizer, as a fluorescent post-synaptic marker of inhibitory synapses. Double labeling showed that Gphnb-tagRFP and collybistin-EGFP clusters co-localized in dendritic inhibitory synapses. Using a transgenic hcrt:Gphnb-EGFP zebrafish, we showed that the number of inhibitory synapses in the dendrites of Hcrt neurons was increased during development. To determine the effect of sleep on the inhibitory synapses, we performed two-photon live imaging of Gphnb-EGFP in Hcrt neurons during day and night, under light/dark and constant light and dark conditions, and following sleep deprivation (SD). We found that synapse number increased during the night under light/dark conditions but that these changes were eliminated under constant light or dark conditions. SD reduced synapse number during the night, and the number increased during post-deprivation daytime sleep rebound. These results suggest that rhythmic structural plasticity of inhibitory synapses in Hcrt dendrites is independent of the circadian clock and is modulated by consolidated wake and sleep.


Subject(s)
Dendrites/physiology , Neuronal Plasticity/physiology , Neurons/physiology , Sleep/physiology , Synapses/physiology , Animals , Animals, Genetically Modified , Circadian Clocks/physiology , Hypothalamus/physiology , Neural Inhibition/physiology , Orexins/metabolism , Zebrafish
13.
Elife ; 52016 10 22.
Article in English | MEDLINE | ID: mdl-27770568

ABSTRACT

The distribution of proteins within sub-synaptic compartments is an essential aspect of their neurological function. Current methodologies, such as electron microscopy (EM) and super-resolution imaging techniques, can provide the precise localization of proteins, but are often limited to a small number of one-time observations with narrow spatial and molecular coverage. The diversity of synaptic proteins and synapse types demands synapse analysis on a scale that is prohibitive with current methods. Here, we demonstrate SubSynMAP, a fast, multiplexed sub-synaptic protein analysis method using wide-field data from deconvolution array tomography (ATD). SubSynMAP generates probability distributions for that reveal the functional range of proteins within the averaged synapse of a particular class. This enables the differentiation of closely juxtaposed proteins. Using this method, we analyzed 15 synaptic proteins in normal and Fragile X mental retardation syndrome (FXS) model mouse cortex, and revealed disease-specific modifications of sub-synaptic protein distributions across synapse classes and cortical layers.


Subject(s)
Fragile X Mental Retardation Protein/genetics , Fragile X Syndrome/pathology , Gene Knockout Techniques , Optical Imaging/methods , RNA-Binding Proteins/analysis , Synapses/chemistry , Animals , Disease Models, Animal , Mice , Mice, Knockout
14.
Brain ; 139(Pt 2): 468-80, 2016 Feb.
Article in English | MEDLINE | ID: mdl-26685158

ABSTRACT

Ischaemic stroke is the leading cause of severe long-term disability yet lacks drug therapies that promote the repair phase of recovery. This repair phase of stroke occurs days to months after stroke onset and involves brain remapping and plasticity within the peri-infarct zone. Elucidating mechanisms that promote this plasticity is critical for the development of new therapeutics with a broad treatment window. Inhibiting tonic (extrasynaptic) GABA signalling during the repair phase was reported to enhance functional recovery in mice suggesting that GABA plays an important function in modulating brain repair. While tonic GABA appears to suppress brain repair after stroke, less is known about the role of phasic (synaptic) GABA during the repair phase. We observed an increase in postsynaptic phasic GABA signalling in mice within the peri-infarct cortex specific to layer 5; we found increased numbers of α1 receptor subunit-containing GABAergic synapses detected using array tomography, and an associated increased efficacy of spontaneous and miniature inhibitory postsynaptic currents in pyramidal neurons. Furthermore, we demonstrate that enhancing phasic GABA signalling using zolpidem, a Food and Drug Administration (FDA)-approved GABA-positive allosteric modulator, during the repair phase improved behavioural recovery. These data identify potentiation of phasic GABA signalling as a novel therapeutic strategy, indicate zolpidem's potential to improve recovery, and underscore the necessity to distinguish the role of tonic and phasic GABA signalling in stroke recovery.


Subject(s)
Drug Delivery Systems , GABA-A Receptor Agonists/administration & dosage , Neural Inhibition/physiology , Pyridines/administration & dosage , Receptors, GABA-A/physiology , Stroke/drug therapy , Animals , Drug Delivery Systems/trends , Male , Mice , Mice, Inbred C57BL , Neocortex/drug effects , Neocortex/physiology , Neural Inhibition/drug effects , Organ Culture Techniques , Recovery of Function/drug effects , Recovery of Function/physiology , Stroke/pathology , Stroke/physiopathology , Zolpidem
16.
Neuron ; 84(6): 1273-86, 2014 Dec 17.
Article in English | MEDLINE | ID: mdl-25521380

ABSTRACT

Cognitive deficits in fragile X syndrome (FXS) are attributed to molecular abnormalities of the brain's vast and heterogeneous synapse populations. Unfortunately, the density of synapses coupled with their molecular heterogeneity presents formidable challenges in understanding the specific contribution of synapse changes in FXS. We demonstrate powerful new methods for the large-scale molecular analysis of individual synapses that allow quantification of numerous specific changes in synapse populations present in the cortex of a mouse model of FXS. Analysis of nearly a million individual synapses reveals distinct, quantitative changes in synaptic proteins distributed across over 6,000 pairwise metrics. Some, but not all, of these synaptic alterations are reversed by treatment with the candidate therapeutic fenobam, an mGluR5 antagonist. These patterns of widespread, but diverse synaptic protein changes in response to global perturbation suggest that FXS and its treatment must be understood as a networked system at the synapse level.


Subject(s)
Fragile X Mental Retardation Protein/genetics , Fragile X Syndrome/metabolism , Imidazoles/pharmacology , Neocortex/cytology , Neocortex/drug effects , Nerve Tissue Proteins/metabolism , Synapses/drug effects , Animals , Fragile X Syndrome/drug therapy , Male , Mice , Mice, Knockout , Neocortex/metabolism , RNA-Binding Proteins/metabolism , Synapses/metabolism
17.
Nature ; 504(7480): 394-400, 2013 Dec 19.
Article in English | MEDLINE | ID: mdl-24270812

ABSTRACT

To achieve its precise neural connectivity, the developing mammalian nervous system undergoes extensive activity-dependent synapse remodelling. Recently, microglial cells have been shown to be responsible for a portion of synaptic pruning, but the remaining mechanisms remain unknown. Here we report a new role for astrocytes in actively engulfing central nervous system synapses. This process helps to mediate synapse elimination, requires the MEGF10 and MERTK phagocytic pathways, and is strongly dependent on neuronal activity. Developing mice deficient in both astrocyte pathways fail to refine their retinogeniculate connections normally and retain excess functional synapses. Finally, we show that in the adult mouse brain, astrocytes continuously engulf both excitatory and inhibitory synapses. These studies reveal a novel role for astrocytes in mediating synapse elimination in the developing and adult brain, identify MEGF10 and MERTK as critical proteins in the synapse remodelling underlying neural circuit refinement, and have important implications for understanding learning and memory as well as neurological disease processes.


Subject(s)
Astrocytes/metabolism , Membrane Proteins/metabolism , Neural Pathways/metabolism , Phagocytosis , Proto-Oncogene Proteins/metabolism , Receptor Protein-Tyrosine Kinases/metabolism , Synapses/metabolism , Animals , Astrocytes/cytology , Brain/cytology , In Vitro Techniques , Lateral Thalamic Nuclei/cytology , Lateral Thalamic Nuclei/metabolism , Learning/physiology , Membrane Proteins/deficiency , Membrane Proteins/genetics , Mice , Mice, Transgenic , Neural Pathways/cytology , Proto-Oncogene Proteins/deficiency , Proto-Oncogene Proteins/genetics , Receptor Protein-Tyrosine Kinases/deficiency , Receptor Protein-Tyrosine Kinases/genetics , Retina/physiology , c-Mer Tyrosine Kinase
18.
Neuron ; 80(1): 64-71, 2013 Oct 02.
Article in English | MEDLINE | ID: mdl-24094103

ABSTRACT

Refinement of mammalian neural circuits involves substantial experience-dependent synapse elimination. Using in vivo two-photon imaging, we found that experience-dependent elimination of postsynaptic dendritic spines in the cortex was accelerated in ephrin-A2 knockout (KO) mice, resulting in fewer adolescent spines integrated into adult circuits. Such increased spine removal in ephrin-A2 KOs depended on activation of glutamate receptors, as blockade of the N-methyl-D-aspartate (NMDA) receptors eliminated the difference in spine loss between wild-type and KO mice. We also showed that ephrin-A2 in the cortex colocalized with glial glutamate transporters, which were significantly downregulated in ephrin-A2 KOs. Consistently, glial glutamate transport was reduced in ephrin-A2 KOs, resulting in an accumulation of synaptic glutamate. Finally, inhibition of glial glutamate uptake promoted spine elimination in wild-type mice, resembling the phenotype of ephrin-A2 KOs. Together, our results suggest that ephrin-A2 regulates experience-dependent, NMDA receptor-mediated synaptic pruning through glial glutamate transport during maturation of the mouse cortex.


Subject(s)
Ephrin-A2/genetics , Neuroglia/metabolism , Synapses/metabolism , Amino Acid Transport System X-AG/metabolism , Animals , Brain/growth & development , Dendritic Spines/metabolism , Ephrin-A2/deficiency , Excitatory Postsynaptic Potentials/genetics , Mice , Mice, Knockout , Receptors, N-Methyl-D-Aspartate/metabolism , Synaptic Transmission/physiology
19.
Article in English | MEDLINE | ID: mdl-23630470

ABSTRACT

Recent advances in imaging tools are inspiring zebrafish researchers to tackle ever more ambitious questions in the neurosciences. Behaviorally fundamental conserved neural networks can now be potentially studied using zebrafish from a brain-wide scale to molecular resolution. In this perspective, we offer a roadmap by which a zebrafish researcher can navigate the course from collecting neural activities across the brain associated with a behavior, to unraveling molecular identities and testing the functional relevance of active neurons. In doing so, important insights will be gained as to how neural networks generate behaviors and assimilate changes in synaptic connectivity.


Subject(s)
Brain/physiology , Calcium Signaling/physiology , Nerve Net/physiology , Synapses/physiology , Animals , Brain/cytology , Humans , Molecular Imaging/methods , Nerve Net/cytology , Zebrafish
20.
PLoS Comput Biol ; 8(8): e1002671, 2012.
Article in English | MEDLINE | ID: mdl-22956902

ABSTRACT

Photon diffraction limits the resolution of conventional light microscopy at the lateral focal plane to 0.61λ/NA (λ = wavelength of light, NA = numerical aperture of the objective) and at the axial plane to 1.4nλ/NA(2) (n = refractive index of the imaging medium, 1.51 for oil immersion), which with visible wavelengths and a 1.4NA oil immersion objective is -220 nm and -600 nm in the lateral plane and axial plane respectively. This volumetric resolution is too large for the proper localization of protein clustering in subcellular structures. Here we combine the newly developed proteomic imaging technique, Array Tomography (AT), with its native 50-100 nm axial resolution achieved by physical sectioning of resin embedded tissue, and a 2D maximum likelihood deconvolution method, based on Bayes' rule, which significantly improves the resolution of protein puncta in the lateral plane to allow accurate and fast computational segmentation and analysis of labeled proteins. The physical sectioning of AT allows tissue specimens to be imaged at the physical optimum of modern high NA plan-apochormatic objectives. This translates to images that have little out of focus light, minimal aberrations and wave-front distortions. Thus, AT is able to provide images with truly invariant point spread functions (PSF), a property critical for accurate deconvolution. We show that AT with deconvolution increases the volumetric analytical fidelity of protein localization by significantly improving the modulation of high spatial frequencies up to and potentially beyond the spatial frequency cut-off of the objective. Moreover, we are able to achieve this improvement with no noticeable introduction of noise or artifacts and arrive at object segmentation and localization accuracies on par with image volumes captured using commercial implementations of super-resolution microscopes.


Subject(s)
Bayes Theorem , Microscopy, Fluorescence/methods , Proteomics , Tomography/methods
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