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1.
Spectrochim Acta A Mol Biomol Spectrosc ; 324: 124968, 2025 Jan 05.
Article in English | MEDLINE | ID: mdl-39153348

ABSTRACT

Ultraviolet-visible (UV-Vis) absorption spectroscopy, due to its high sensitivity and capability for real-time online monitoring, is one of the most promising tools for the rapid identification of external water in rainwater pipe networks. However, difficulties in obtaining actual samples lead to insufficient real samples, and the complex composition of wastewater can affect the accurate traceability analysis of external water in rainwater pipe networks. In this study, a new method for identifying external water in rainwater pipe networks with a small number of samples is proposed. In this method, the Generative Adversarial Network (GAN) algorithm was initially used to generate spectral data from the absorption spectra of water samples; subsequently, the multiplicative scatter correction (MSC) algorithm was applied to process the UV-Vis absorption spectra of different types of water samples; following this, the Variational Mode Decomposition (VMD) algorithm was employed to decompose and recombine the spectra after MSC; and finally, the long short-term memory (LSTM) algorithm was used to establish the identification model between the recombined spectra and the water source types, and to determine the optimal number of decomposed spectra K. The research results show that when the number of decomposed spectra K is 5, the identification accuracy for different sources of domestic sewage, surface water, and industrial wastewater is the highest, with an overall accuracy of 98.81%. Additionally, the performance of this method was validated by mixed water samples (combinations of rainwater and domestic sewage, rainwater and surface water, and rainwater and industrial wastewater). The results indicate that the accuracy of the proposed method in identifying the source of external water in rainwater reaches 98.99%, with detection time within 10 s. Therefore, the proposed method can become a potential approach for rapid identification and traceability analysis of external water in rainwater pipe networks.

2.
Chemosphere ; 364: 143105, 2024 Sep.
Article in English | MEDLINE | ID: mdl-39153531

ABSTRACT

Nitrogen fixation using low-temperature plasma, particularly in relation to plasma-treated water (PTW) and its chemical and physical properties, has received a renewed research focus. Dissolving highly concentrated nitrogen oxides (NOx = 1-3) generated by air discharge into water results in the formation of two aqueous oxiacids (nitrous and nitric acids; HNOy = 2,3) and their conjugates (nitrate and nitrite ions; NOy-). Nonlinear formation of these species in PTW with respect to plasma conditions has been observed; however, the significance of the time-varying NOx on this nonlinearity has not yet been thoroughly investigated. Here, we demonstrate real-time observations of HNOy/NOy- as well as NOx production in a surface dielectric barrier discharge reactor containing distilled water. Synchronized two optical absorption spectroscopy systems were employed to simultaneously measure gas-phase NOx and liquid-phase HNOy/NOy- in the plasma reactor operated under different oxygen contents of 5, 20, and 50%. Our results showed that reducing the oxygen content in the reactor accelerated the chemical transition from O3 and NO3 to NO1,2, leading to a predominance of nitrite in PTW. Specifically, the NO3-rich period was extended with increasing O2 content, resulting in the production of nitrate-dominant PTW at low pH levels. Our findings highlight the potential for the selective generation of HNOy/NOy- in PTW through the active and passive control of NOx in a plasma reactor. The direct, real-time observation of NOx-HNOy/NOy- conversion presented here has potential for improving the control and optimization of PTW, thereby enhancing its applicability.


Subject(s)
Nitrogen Oxides , Nitrous Acid , Plasma Gases , Water , Nitrous Acid/chemistry , Nitrogen Oxides/chemistry , Plasma Gases/chemistry , Water/chemistry , Nitrites/chemistry , Nitrates/chemistry , Water Purification/methods , Nitric Oxide , Water Pollutants, Chemical/analysis , Water Pollutants, Chemical/chemistry , Oxygen/chemistry
3.
ACS Appl Mater Interfaces ; 16(9): 11767-11777, 2024 Mar 06.
Article in English | MEDLINE | ID: mdl-38408283

ABSTRACT

In addition to the donor-acceptor nano phases, the intermixed phase within the organic blends is crucial for the photovoltaic performance and stability of the bulk-heterojunction organic solar cells (OSCs). Here, the intermixed phase of a representative M-PhS:BTP-eC9 all-small-molecule organic solar cell was investigated by a concentration-dependent ultraviolet-visible (UV-vis) absorption spectroscopy method, where a shift of the absorption maximum wavelength was measured for the acceptor component with the increase of the acceptor concentration. The blend ratios of the acceptor to the donor in the intermixed phase, corresponding to the critical concentration for the formation of the acceptor nanophase (CAP), were determined to be 0.35, 0.20, and 0.15 for the as-cast, thermal annealing (TA), and the combined TA and solvent vapor annealing films. These results indicated that M-PhS and BTP-eC9 are kinetically well intermixed during spin coating, whereas TA and the following solvent annealing promote the crystallization of BTP-eC9 molecules out of the intermixed phase. The photovoltaic performance of the M-PhS:BTP-eC9 cells with different blend ratios was investigated. The formation of the BTP-eC9 nano phase in the blend film leads to stable VOC and fast increased JSC, which can be understood by the reduction of bimolecular charge recombination and the formation of electron transporting pathways within the photoactive layer. Similarly, the critical concentration for the formation of the donor phase was estimated to be 0.15 by measuring the stabilized VOC and increased JSC values of the cells with different donor blending ratios. More importantly, after a fast "burn-in" thermal degradation, the M-PhS:BTP-eC9 cell showed excellent thermal stability aging at 85 °C for over 1128 h, which is in good accordance with the unchanged intermixed phases measured by the UV-vis spectra of the annealed films. The current work demonstrates the feasibility of the spectroscopy method to investigate the intermixed phases for organic bulk-heterojunction solar cells and proves that all-small-molecule solar cells can be intrinsically very stable.

4.
Spectrochim Acta A Mol Biomol Spectrosc ; 310: 123950, 2024 Apr 05.
Article in English | MEDLINE | ID: mdl-38277780

ABSTRACT

Carotenoid aggregates are omnipresent in natural world and can be synthesized in hydrophilic environments. Despite different types of carotenoid aggregates have been reported hitherto, the way to predict the formation of carotenoid aggregates, i.e. H- or J-aggregates, is still challenging. Here, for the first time, we established machine learning models that can predict the formation behavior of carotenoid aggregates. The models are trained based on a database containing different types of carotenoid aggregates reported in the literatures. With the help of these machine learning models, we found a series of unknown types of ß-carotene J-aggregates. These novel aggregates are ultra-weakly coupled and have absorption bands up to 700 nm, different from all the carotenoid aggregates reported previously. Our work demonstrates that the machine learning is a powerful tool to predict the formation behavior of carotenoid aggregates and can further lead into the discovery of new carotenoid aggregates for different applications.

5.
Protein Sci ; 33(3): e4867, 2024 Mar.
Article in English | MEDLINE | ID: mdl-38093605

ABSTRACT

Prostate apoptosis response-4 (Par-4) tumor suppressor protein has gained attention as a potential therapeutic target owing to its unique ability to selectively induce apoptosis in cancer cells, sensitize them to chemotherapy and radiotherapy, and mitigate drug resistance. It has recently been reported that Par-4 interacts synergistically with cisplatin, a widely used anticancer drug. However, the mechanistic details underlying this relationship remain elusive. In this investigation, we employed an array of biophysical techniques, including circular dichroism spectroscopy, dynamic light scattering, and UV-vis absorption spectroscopy, to characterize the interaction between the active caspase-cleaved Par-4 (cl-Par-4) fragment and cisplatin. Additionally, elemental analysis was conducted to quantitatively assess the binding of cisplatin to the protein, utilizing inductively coupled plasma-optical emission spectroscopy and atomic absorption spectroscopy. Our findings provide evidence of direct interaction between cl-Par-4 and cisplatin, and reveal a binding stoichiometry of 1:1. This result provides insights that could be useful in enhancing the efficacy of cisplatin-based and tumor suppressor-based cancer therapies.


Subject(s)
Antineoplastic Agents , Cisplatin , Male , Humans , Cisplatin/pharmacology , Cisplatin/chemistry , Caspases , Prostate , Apoptosis , Cell Line, Tumor , Antineoplastic Agents/pharmacology
6.
Molecules ; 28(14)2023 Jul 19.
Article in English | MEDLINE | ID: mdl-37513388

ABSTRACT

The electronic absorption and vibrational spectra of deprotonated 5,10,15,20-tetrakis(p-hydroxyphenyl)porphyrin (THPP) are studied as a function of solvent polarity in H2O-DMF, H2O-acetone, H2O-methanol, and DMF-acetone mixtures. The maximum absorption wavelength (λmax) of the lowest energy electronic absorption band of deprotonated THPP shows an unusual solvatochromism-a bathochromic followed by a hypsochromic shift with reduced polarity. According to the correlation analysis, both specific interactions (H-bonds) and nonspecific interactions affect the spectral changes of this porphyrin. Furthermore, the solvent polarity scale ET(30) can explain both shifts very well. At higher polarity (ET(30) > 48), THPP exists as a hyperporphyrin. The ET(30) is linear with λmax and a decrease in solvent polarity is accompanied by a bathochromic shift of λmax. These results can be rationalized in terms of the cooperative effects of H-bonds and nonspecific interactions on the spectra of hyperporphyrin. At relatively low polarity (45.5 < ET(30) < 48), hyperporphyrin gradually becomes Na2P as ET(30) reaches the critical value of 45.5. The spectrum of the hyperporphyrin turns into the three-band spectrum of the metalloporphyrin, which is accompanied by a hypsochromic shift of λmax.

7.
Int J Mol Sci ; 24(8)2023 Apr 08.
Article in English | MEDLINE | ID: mdl-37108088

ABSTRACT

The electrochemical and spectroelectrochemical properties of the discotic mesogen 2,3,6,7,10,11-pentyloxytriphenylene (H5T) were studied with the use of cyclic voltammetry combined with UV-Vis and electron paramagnetic resonance (EPR) spectroscopy in solution. The UV-Vis absorption spectroscopy of H5T in dichloromethane showed its monomeric state in a concentration range up to 10-3 mol dm-3. The reversible process of the electrochemical formation of the radical cation was evidenced within the experimentally accessible potential window. The in situ UV-Vis spectroelectrochemical measurements further enabled identification of the product of the redox process and evaluation of the effect of aggregation in the concentration range of 5 × 10-3 mol dm-3. The results are discussed in the frame of solvent effects on the self-assembly propensity of solute molecules, in a wide range of concentrations. In particular, the crucial role of the solvent polarity is indicated, which contributes to the understanding of solution effects and pre-programming of supramolecular organic materials, in particular anisotropic disc-shaped hexa-substituted triphenylenes.


Subject(s)
Spectrophotometry, Ultraviolet , Spectrophotometry, Ultraviolet/methods , Electron Spin Resonance Spectroscopy , Oxidation-Reduction , Solvents
8.
J Comput Chem ; 44(14): 1381-1394, 2023 May 30.
Article in English | MEDLINE | ID: mdl-36825673

ABSTRACT

We present a large set of vertical excitation calculations for the ortho-nitrobenzaldehyde (oNBA) molecule, which exhibits a very challenging excited-state electronic structure like other nitroaromatic compounds. The single-reference methods produce mostly consistent results up to about 5.5 eV. By contrast, the CAS second-order perturbation theory (CASPT2) results depend sensitively on the employed parameters. At the CAS self-consistent field level, the energies of the bright ππ * states are strongly overestimated while doubly excited states appear too low and mix with these ππ * states. This mixing hampers the CASPT2 step, leading to inconsistent results. Only by increasing the number of states in the state-averaging step to about 40-to cover all bright ππ * states embedded in the double excitations-and employing extended multistate CASPT2 could CASPT2 results consistent with experiment be obtained. We assign the four bands in the molecule's spectrum: The weakest band at 3.7 eV arises from the n NO 2 π * states, the second one at 4.4 eV from the ππ * ( L b ) state, the shoulder at 5.2 eV from the ππ * ( L a ) state, and the maximum at 5.7 eV from the ππ * ( B a / B b ) states. We also highlight the importance of modern wave function analysis techniques in elucidating the absorption spectrum of challenging molecules.

9.
Spectrochim Acta A Mol Biomol Spectrosc ; 287(Pt 1): 122092, 2023 Feb 15.
Article in English | MEDLINE | ID: mdl-36403540

ABSTRACT

In the present study, a multi-modal approach consisting of in-situ photoluminescence, Raman, and UV-Vis absorption spectroscopic studies is carried out along with chemiresistive sensing to unveil the mechanism of NH3 gas sensing by V2O5 nanoparticles in ambient air. V2O5 nanoparticles with an average size of 49 nm show a superior sensor response of 17 ± 1.5 % towards 1 ppm of NH3 gas with a response and recovery time of 96 s and 45 s, respectively. The photoluminescence and UV-Vis absorption studies in the presence of NH3 reveal electron doping to a new energy level at 1.84 eV, resulting in conduction band filling and increase in the optical band gap. The intensity of the photoluminescence spectrum shows an increase in the presence of NH3 gas as a result of this electron doping. The sensor response from the optical sensing carried out by in-situ photoluminescence study is 43 % for 40 ppm of NH3 gas. The vanadyl oxygen site is the most active in the sensing process, as evident by a selective enhancement in the intensity of V-O (vanadyl) bond vibration. This study gives an experimental evidence for the changes in optical and electronic properties of V2O5 on the adsorption of NH3 gas molecules.

10.
Pharmaceutics ; 14(11)2022 Nov 05.
Article in English | MEDLINE | ID: mdl-36365208

ABSTRACT

Photodynamic therapy has the potential to be a new and effective cancer treatment. Even if in vitro and in vivo research show promise, the molecular mechanism remains unclear. In this study, molecular docking simulations predict the binding affinity of the 5,10,15,20-tetrakis(4'-sulfonatophenyl)-porphyrin tetraammonium photosensitizer on several potential targets in photodynamic treatment. Our results indicate that this photosensitizer binds to several receptor targets, including B-cell lymphoma 2 (BCL-2) and other related proteins BCL-xL, MCL-1, or A1. The binding affinity of the porphyrin derivative with human serum albumin was determined using UV-vis absorption spectroscopy and predicted using molecular docking. We conclude that the studied porphyrin photosensitizer binds to human serum albumin and may inhibit the cancer cell line through its interactions with HIS and MET AA residues from BCL-2, MCL-1, and ß-catenin receptors or through its low estimated free energy of binding when interacting with A1 and BCL-B receptors.

11.
Pharmaceuticals (Basel) ; 15(7)2022 Jul 09.
Article in English | MEDLINE | ID: mdl-35890142

ABSTRACT

Curcumin has been demonstrated to exhibit photosensitized bactericidal activity. However, the full exploitation of curcumin as a photo-pharmaceutical active principle is hindered by fast deactivation of the excited state through the transfer of the enol proton to the keto oxygen. Introducing an asymmetry in the molecular structure through acting on the phenyl substituents is expected to be a valuable strategy to impair this undesired de-excitation mechanism competing with the therapeutically relevant ones. In this study, two asymmetric curcumin analogs were synthesized and characterized as to their electronic-state transition spectroscopic properties. Fluorescence decay distributions were also reconstructed. Their analysis confirmed the substantial stabilization of the fluorescent state with respect to the parent compound. Nuclear magnetic resonance experiments were performed with the aim of determining the structural features of the keto-enol ring and the strength of the keto-enol hydrogen bond. Electronic structure calculations were also undertaken to elucidate the effects of substitution on the features of the keto-enol semi-aromatic system and the proneness to proton transfer. Finally, their singlet oxygen-generation efficiency was compared to that of curcumin through the 9,10-dimethylanthracene fluorescent assay.

12.
J Mol Model ; 28(1): 28, 2022 Jan 05.
Article in English | MEDLINE | ID: mdl-34984545

ABSTRACT

In this paper, density functional theory (DFT) and time-dependent density functional theory (TDDFT) are used to study the complexation characteristics CdTe QDs with four different capping agents, i.e. 3-mercaptopropionic acid (MPA), reduced glutathione (GSH), 1-thioglycerol (TG) and 2-mercaptoethanesulfonate (MES). The properties of these complexes are analyzed by the complexation free energies, bond lengths, LOL, ADCH charges, frontier molecular orbitals and the UV-Vis absorption spectra. The results indicate that the four capping agents could form stable complexes with CdTe QDs. Whether the four capping agents interact with (CdTe)6 or (CdTe)9, MES has the strongest complexation ability with CdTe QDs and the MES-complexes are the most stable. For (CdTe)6, A2-MES is the most stable configuration. The complexation free energy and bond length of A2-MES are - 74.50 kcal/mol and 2.461 Å, respectively. When (CdTe)9 as substrate, A4-MES is the most stable configuration and corresponding complexation free energy is - 100.97 kcal/mol, which is followed by A4-MPA (- 57.75 kcal/mol) and A3-TG (- 60.20 kcal/mol), while A4-GSH (- 44.47 kcal/mol) is the weakest. Moreover, the electron amount transferred from MES to CdTe QDs is the most, and the ADCH charge value is 1.47 e. The absorption intensity of UV-visible light after complexation is also the largest. This is consistent with the result of the complexation free energy. Thus, it can be seen that the complexation abilities of four capping agents are in order of MES > MPA≈TG > GSH.

13.
Micromachines (Basel) ; 12(10)2021 Sep 22.
Article in English | MEDLINE | ID: mdl-34683189

ABSTRACT

Aptamer- or antibody-based sensing protocols have been reported for detecting carcinoembryonic antigen (CEA), but most exhibit complicated procedures or multiple reactions. In this work, we developed a one-step aptasensing protocol for the spectrometric determination of CEA based on 4-nitrophenol (4-NP)-loaded magnetic mesoporous silica nanohybrids (MMSNs) for bioresponsive controlled-release applications. To fabricate such a responsive-controlled sensing system, single-stranded complementary oligonucleotides relative to the CEA-specific aptamer were first modified on the aminated MMSN. Thereafter, 4-NP molecules blocked the pores with the assistance of the aptamers via a hybridization reaction. The introduced target CEA specifically reacted with the hybridized aptamer, thus detaching from the MMSN to open the gate. The loaded 4-NP molecules were released from the pores, as determined using ultraviolet-visible (UV-vis) absorption spectroscopy after magnetic separation. Under optimum conditions, the absorbance increased with an increase in the target CEA in the sample and exhibited a good linear relationship within the dynamic range of 0.1-100 ng mL-1, with a detection limit of 46 pg mL-1. Moreover, this system also displayed high specificity, good reproducibility, and acceptable accuracy for analyzing human serum specimens, in comparison with a commercialized human CEA-enzyme-linked immunosorbent assay (ELISA) kit.

14.
Environ Monit Assess ; 192(2): 103, 2020 Jan 08.
Article in English | MEDLINE | ID: mdl-31915995

ABSTRACT

Solar ultraviolet (UV) radiation exhibits a significant degradation for dissolved organic matter (DOM) in natural water ecosystems. However, research on photodegradation process of terrestrial components (e.g., humic-like substances) of DOM are limited due to drastic water dilution and rapid degradation. Here, photochemical degradation of terrestrial soil DOM with abundant humic-like substances from different land use were investigated by utilizing spectral technologies. Simulated UV radiation caused obvious losses on concentration, component structures, and fluorescence characteristic of soil DOM samples. The correlations between absorption specific parameters (a280, SUVA254, and SR) and dissolved organic carbon (DOC) were especially pronounced (p < 0.05), which could be used as valid indicators to determine changes in DOM composition and molecular size during photobleaching process. The decreases of DOM fluorescence intensity were corresponded to first-order kinetic and half-life reactions. The greatest reduction on fluorescence intensity (31.56-81.97%) belonged to peak C (i.e., humic-like substances). Overall, DOM from forest and grass soil ecosystems was more easily photochemical degraded than anthropogenic soil DOM. Enhancive contribution of fresh DOM formed by photodegradation increased autochthonous characteristic and bioavailable nutrition by increasing biological index (BIX) values and ammonia nitrogen (NH4+-N) concentration. The slight microbial decomposition effects on DOM happened in unsterilized dark condition. Our findings provided insights for understanding the rapid photodegradation processes of composition and structure of terrestrial DOM. Graphical abstract.


Subject(s)
Humic Substances/radiation effects , Organic Chemicals/radiation effects , Soil/chemistry , Ultraviolet Rays , Ecosystem , Environmental Monitoring , Fluorescence , Humic Substances/analysis , Organic Chemicals/chemistry , Photolysis
15.
IUCrJ ; 6(Pt 4): 619-629, 2019 Jul 01.
Article in English | MEDLINE | ID: mdl-31316806

ABSTRACT

Martensitic transformations are the first-order crystal-to-crystal phase transitions that occur mostly in materials such as steel, alloys and ceramics, thus having many technological applications. These phase transitions are rarely observed in molecular crystals and have not been detected in protein crystals. Reversibly switchable fluorescent proteins are widely used in biotechnology, including super-resolution molecular imaging, and hold promise as candidate biomaterials for future high-tech applications. Here, we report on a reversibly switchable fluorescent protein, Tetdron, whose crystals undergo a photo-induced martensitic transformation at room temperature. Room-temperature X-ray crystallography demonstrates that at equilibrium Tetdron chromophores are all in the trans configuration, with an ∼1:1 mixture of their protonated and deprotonated forms. Irradiation of a Tetdron crystal with 400 nm light induces a martensitic transformation, which results in Tetdron tetramerization at room temperature revealed by X-ray photocrystallography. Crystal and solution spectroscopic measurements provide evidence that the photo-induced martensitic phase transition is coupled with the chromophore deprotonation, but no trans-cis isomerization is detected in the structure of an irradiated crystal. It is hypothesized that protein dynamics assists in the light-induced proton transfer from the chromophore to the bulk solvent and in the ensuing martensitic phase transition. The unique properties of Tetdron may be useful in developing novel biomaterials for optogenetics, data storage and nanotechnology.

16.
IUCrJ ; 6(Pt 4): 781, 2019 07 01.
Article in English | MEDLINE | ID: mdl-31318360

ABSTRACT

[This retracts the article DOI: 10.1107/S2052252519005761.].

17.
Vaccine ; 37(8): 1073-1079, 2019 02 14.
Article in English | MEDLINE | ID: mdl-30685250

ABSTRACT

Triton X-100 (TX-100) is the most common surfactant used to split viruses during the production of influenza split-virus vaccines. It is a mild surfactant not known to denature the viral proteins; this property makes TX-100 useful for maintaining antigen conformational structure, and, as an added benefit, for partially stabilizing vaccine formulations against protein aggregation. Despite its benefits, TX-100 needs to be filtered out after virus splitting has been achieved, due to its toxicity in large quantities. Accordingly, residual TX-100 presence in vaccine formulations has implications for both formulation stability and safety, necessitating both accurate screening during processing to guide decision-making about filtration repeats and accurate quantitation in the final product. Accurate HPLC-based methods are used successfully for the latter but their use for routine screening during processing is far from ideal because they often require extensive sample preparation and are fairly slow, complicated and costly. Here, "deconstruction" of UV-Vis absorption spectra into components corresponding to different absorbing "species" is demonstrated as a novel and viable method for routine TX-100 screening in vaccine samples from different industrial processing steps. This method is fairly accurate and, more importantly, preparation-free, rapid, simple/user-friendly and comparatively inexpensive. It is evaluated in depth in terms of applicability conditions, limitations and potential for high-throughput adaptation as well as generalization to other complex biopharmaceutical formulations.


Subject(s)
Influenza Vaccines/chemistry , Influenza Vaccines/immunology , Surface-Active Agents/chemistry , Antibodies, Viral/immunology , Octoxynol/chemistry , Viral Proteins/immunology
18.
Article in English | MEDLINE | ID: mdl-30660952

ABSTRACT

A new and straightforward optical sensor for the colorimetric determination of adenosine (AD) in human urine samples was developed. The sensor comprised silver nanoparticles (AgNPs) as colorimetric elements and anti-AD aptamer (AP) as a recognition probe. In a solution containing AD and high concentration of NaCl, due to the unique binding of AD with AP, the aggregated metal nanomaterials dispersed in the solution, and the color intensity of the solution was changed accordingly. The absorbance of the solution was monitored for AD quantification. The method was applicable for the determination of AD in the concentration range of 60-280 nM with the detection limit of 21 nM. The relative standard deviation ranged from 4.8 to 8.8% for six replicates. The method showed excellent selectivity toward AD checked over some probable interfering compounds. To investigate the performance of AgNPs, the analytical characteristics of the method including linear range, detection limit, selectivity, and precision were compared with those obtained by a common AuNPs-based aptasensor. The reliability of the method was further ascertained for the detection of AD in urine samples of two lung cancer patients with percentage recoveries in the range of 98-107%.


Subject(s)
Adenosine/urine , Aptamers, Nucleotide/chemistry , Biosensing Techniques/methods , Colorimetry/methods , Metal Nanoparticles/chemistry , Silver/chemistry , Humans , Limit of Detection , Reproducibility of Results , Spectrophotometry, Ultraviolet
19.
MethodsX ; 5: 345-351, 2018.
Article in English | MEDLINE | ID: mdl-30050754

ABSTRACT

In ligand-protein binding experiments the major challenge is to separate bound from free ligand. Equilibrium and gel filtration separation techniques are often hampered by competition for the ligand and non-specific binding. Biophysical assays have attempted to circumvent this problem using titration calorimetry and spectroscopic methods. However, insoluble ligands require solvents that can overwhelm the discernible enthalpic changes of the protein and ligands. Spectroscopic methods are effective but may suffer from insensitivity (NMR) or the need for a lipid analog e.g., fluorescence and electron paramagnetic resonance. Our purpose is to compare the standard fluorescence assay to a technique we call high speed centrifugal precipitation. High speed centrifugal precipitation is suited to ligands that are insoluble in aqueous. The method permits separation of insoluble free ligand from that bound to the protein. The concentration of the each fraction can be precisely measured by absorbance spectrophotometry. A second technique, linear spectral summation has been published for protein-ligand associations using fluorescence of labeled ligands [1]. Here, the method is altered for use with ultraviolet-visible (UV-Vis) absorption spectroscopy. If the ligand complex shows a shift in the peak absorption of >8 nm, the bound and free concentrations can be measured simultaneously. The composite spectra of the samples are fit by linearly scaling UV-Vis absorption spectra of pure bound and free components at each point. •Ligand- protein binding kinetics is accessible with an ordinary spectrophotometer.•Concentrations are accurately measured from molar extinction coefficients.•The methods are ideal for lipid ligands that show absorption spectral peaks shifts in the bound and free states and/or are insoluble.

20.
Molecules ; 22(7)2017 Jun 28.
Article in English | MEDLINE | ID: mdl-28657593

ABSTRACT

The focus of the present work was to investigate the interaction of the anticancer drug mitoxantrone with two bile salts, sodium taurodeoxycholate (NaTDC) and sodium taurocholate (NaTC). Ultraviolet-visible (UV-Vis) absorption and electron paramagnetic resonance (EPR) spectroscopy were used to quantify the interaction and to obtain information on the location of mitoxantrone in bile salt micelles. The presence of submicellar concentrations of both bile salts induces mitoxantrone aggregation and the extent of drug aggregation in NaTDC is higher than in NaTC. For micellar bile salts concentrations, mitoxantrone monomers are entrapped in the micellar core. Binding constants, micelle/water partition coefficients and the corresponding thermodynamic parameters for binding and partitioning processes were estimated using the changes in monomer absorbance in the presence of bile salts. Binding interaction of mitoxantrone is stronger for NaTDC than NaTC micelles, whereas partitioning efficiency is higher for NaTC micelles for all investigated temperatures. Thermodynamic parameters indicate that both binding and partitioning processes are spontaneous and entropy controlled. The spectral behavior and thermodynamic parameters indicate distinct types of mitoxantrone interaction with NaTDC and NaTC micelles supported by the differences in nature and structure of bile salts micelles.


Subject(s)
Antineoplastic Agents/chemistry , Bile Acids and Salts/chemistry , Mitoxantrone/chemistry , Taurocholic Acid/chemistry , Taurodeoxycholic Acid/chemistry , Electron Spin Resonance Spectroscopy , Spectrophotometry, Ultraviolet
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