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1.
PLoS One ; 13(10): e0206530, 2018.
Article in English | MEDLINE | ID: mdl-30365553

ABSTRACT

Cold atmospheric-pressure plasma (CAP) is a relatively new method used for bacterial inactivation. CAP is ionized gas that can be generated by applying an electric current to air or a feeding gas. It contains reactive species and emits UV radiation, which have antibacterial activity. Previous data suggests that CAP is effective in microbial inactivation and can decontaminate and sterilize surfaces, but its exact mode of action is still under debate. This study demonstrates the effect of CAP on the whole proteome of Pseudomonas aeruginosa PAO1 biofilms, which is a dominant pathogen in cystic fibrosis and medical device-related infections. Liquid chromatography-mass spectrometry (LC-MS) was used to identify differentially regulated proteins of whole cell P. aeruginosa extracts. A total of 16 proteins were identified to be affected by plasma treatment compared to the control. Eight of the identified proteins have functions in transcription and translation and their expression changes are likely to be part of a general physiological response instead of a CAP-specific adaptation. However, CAP also affected bacterioferritin (Bfr), Isocitrate dehydrogenase (Idh), Trigger factor (Tig) and a chemotaxis protein, which may be involved in P. aeruginosa's specific response to CAP. We confirm that bacterioferritin B plays a role in the bacterial response to CAP because ΔbfrB mutants of both PAO1 and PA14 are more susceptible to plasma-induced cell-death than their corresponding wild-type strains. To our knowledge, this is the first study showing the effect of plasma on the whole proteome of a pathogenic microorganism. It will help our understanding of the mode of action of CAP-mediated bacterial inactivation and thus support a safe and effective routine use of CAP in clinical and industrial settings.


Subject(s)
Anti-Bacterial Agents/pharmacology , Bacterial Proteins/drug effects , Cytochrome b Group/drug effects , Ferritins/drug effects , Plasma/metabolism , Proteome/drug effects , Pseudomonas aeruginosa/drug effects , Atmospheric Pressure , Biofilms/drug effects , Cell Death/drug effects , Cystic Fibrosis/drug therapy , Cystic Fibrosis/microbiology , Microbial Viability/drug effects , Protein Biosynthesis/drug effects , Transcription, Genetic/drug effects
2.
Environ Toxicol ; 31(7): 877-86, 2016 Jul.
Article in English | MEDLINE | ID: mdl-25532856

ABSTRACT

MicroRNAs (miRNAs), which are a class of small noncoding RNAs, can modulate the expression of many protein-coding genes when an organism is exposed to an environmental chemical. We previously demonstrated that miR-155 was significantly downregulated in adult zebrafish (Danio rerio) in response to fipronil (5-amino-1-[2,6-dichloro-4-(trifluoromethyl) phenyl]-4-[(trifluoromethyl) sulphinyl]-1H-pyrazole-3-carbonitrile) exposure. However, the regulation of this miRNA's predicted target gene cyb561d2, which is a member of the cytochrome b561 (cyt b561) family involved in electron transfer, cell defence, and chemical stress, has not been experimentally validated to date. In this study, we evaluated the effects of fipronil on miR-155 and cyb561d2 in zebrafish. The expression of miR-155 was downregulated, whereas cyb561d2 was upregulated in both mRNA and protein level in a dose-dependent manner upon stimulation of fipronil. The dual luciferase report assay demonstrated that miR-155 interacted with cyb561d2 3'-untranslated regions (3'-UTR). The expression of cyb561d2 was reduced in both mRNA and protein levels when ZF4 cells were transfected with an miR-155 mimic, whereas its expression levels of both mRNA and protein were increased when endogenous miR-155 was inhibited by transfection with an miR-155 inhibitor. The results improved our understanding of molecular mechanism of toxicity upon fipronil exposure, and presents miR-155 as a potential novel toxicological biomarker for chemical exposure. © 2014 Wiley Periodicals, Inc. Environ Toxicol 31: 877-886, 2016.


Subject(s)
Cytochrome b Group/drug effects , Insecticides/toxicity , MicroRNAs/drug effects , Pyrazoles/toxicity , Zebrafish Proteins/drug effects , Zebrafish , 3' Untranslated Regions/drug effects , Animals , Biomarkers , Cell Line , Dose-Response Relationship, Drug , Gene Expression Regulation, Enzymologic/drug effects , MicroRNAs/biosynthesis
3.
Biochem J ; 446(1): 125-33, 2012 Aug 15.
Article in English | MEDLINE | ID: mdl-22642556

ABSTRACT

A gene encoding Bfr (bacterioferritin) was identified and isolated from the genome of Desulfovibrio vulgaris cells, and overexpressed in Escherichia coli. In vitro, H(2)O(2) oxidizes Fe(2+) ions at much higher reaction rates than O(2). The H(2)O(2) oxidation of two Fe(2+) ions was proven by Mössbauer spectroscopy of rapid freeze-quenched samples. On the basis of the Mössbauer parameters of the intermediate species we propose that D. vulgaris Bfr follows a mineralization mechanism similar to the one reported for vertebrate H-type ferritins subunits, in which a diferrous centre at the ferroxidase site is oxidized to diferric intermediate species, that are subsequently translocated into the inner nanocavity. D. vulgaris recombinant Bfr oxidizes and stores up to 600 iron atoms per protein. This Bfr is able to bind DNA and protect it against hydroxyl radical and DNase deleterious effects. The use of H(2)O(2) as an oxidant, combined with the DNA binding and protection activities, seems to indicate a DPS (DNA-binding protein from starved cells)-like role for D. vulgaris Bfr.


Subject(s)
Bacterial Proteins/metabolism , Cytochrome b Group/metabolism , DNA, Bacterial/metabolism , Desulfovibrio vulgaris/metabolism , Ferritins/metabolism , Iron/metabolism , Bacterial Proteins/drug effects , Bacterial Proteins/genetics , Cloning, Molecular , Cytochrome b Group/drug effects , Cytochrome b Group/genetics , DNA-Binding Proteins/metabolism , Escherichia coli/genetics , Ferritins/drug effects , Ferritins/genetics , Hydrogen Peroxide/pharmacology , Oxidation-Reduction , Oxidative Stress , Spectrophotometry, Ultraviolet , Spectroscopy, Mossbauer
4.
Bioorg Med Chem ; 16(9): 5331-44, 2008 May 01.
Article in English | MEDLINE | ID: mdl-18343120

ABSTRACT

The auxins, plant hormones, regulate many aspects of the growth and development of plants. Terfestatin A (TrfA), a novel auxin signaling inhibitor, was identified in a screen of Streptomyces sp. F40 extracts for inhibition of the expression of an auxin-inducible gene. However, the mode of action of TrfA has not been elucidated. To identify the active core structure, 25 derivatives of TrfA were synthesized and their inhibitory activities against auxin-inducible gene expression were evaluated. The structure-activity relationships revealed the essential active core structure of TrfA, 3-butoxy-4-methylbiphenyl-2,6-diol, which will lead to the design of biotin-tagged active TrfA.


Subject(s)
Glucosides/pharmacology , Indoleacetic Acids/antagonists & inhibitors , Signal Transduction/drug effects , Terphenyl Compounds/pharmacology , Binding Sites , Cytochrome b Group/drug effects , Cytochrome b Group/genetics , Drug Design , Drug Evaluation, Preclinical , Electron Transport Complex IV/drug effects , Electron Transport Complex IV/genetics , Gene Expression Regulation, Enzymologic/drug effects , Glucosides/chemical synthesis , Glucosides/chemistry , Glucuronidase/drug effects , Glucuronidase/genetics , Indoleacetic Acids/pharmacology , Models, Molecular , Molecular Structure , Stereoisomerism , Streptomyces/chemistry , Structure-Activity Relationship , Terphenyl Compounds/chemical synthesis , Terphenyl Compounds/chemistry
5.
Biochemistry ; 46(4): 1091-105, 2007 Jan 30.
Article in English | MEDLINE | ID: mdl-17240992

ABSTRACT

The present study provides a thorough analysis of effects on the redox properties of cytochrome (Cyt) b559 induced by two photosystem II (PS II) herbicides [3-(3,4-dichlorophenyl)-1,1-dimethylurea (DCMU) and 2,4-dinitro-6-sec-butylphenol (dinoseb)], an acceleration of the deactivation reactions of system Y (ADRY) agent carbonylcyanide-m-chlorophenylhydrazone (CCCP), and the lipophilic PS II electron-donor tetraphenylboron (TPB) in PS II membrane fragments from higher plants. The obtained results revealed that (1) all four compounds selectively affected the midpoint potential (E(m)) of the high potential (HP) form of Cyt b559 without any measurable changes of the E(m) values of the intermediate potential (IP) and low potential (LP) forms; (2) the control values from +390 to +400 mV for HP Cyt b559 gradually decreased with increasing concentrations of DCMU, dinoseb, CCCP, and TPB; (3) in the presence of high TPB concentrations, a saturation of the E(m) decrease was obtained at a level of about +240 mV, whereas no saturation was observed for the other compounds at the highest concentrations used in this study; (4) the effect of the phenolic herbicide dinoseb on the E(m) is independent of the occupancy of the Q(B)-binding site by DCMU; (5) at high concentrations of TPB or dinoseb, an additional slow and irreversible transformation of HP Cyt b559 into IP Cyt b559 or a mixture of the IP and LP Cyt b559 is observed; and (6) the compounds stimulate autoxidation of HP Cyt b559 under aerobic conditions. These findings lead to the conclusion that a binding site Q(C) exists for the studied substances that is close to Cyt b559 and different from the Q(B) site. On the basis of the results of the present study and former experiments on the effect of PQ extraction and reconstitution on HP Cyt b559 [Cox, R. P., and Bendall, D. S. (1974) The functions of plastoquinone and beta-carotene in photosystem II of chloroplasts, Biochim. Biophys. Acta 347, 49-59], it is postulated that the binding of a plastoquinone (PQ) molecule to Q(C) is crucial for establishing the HP form of Cyt b559. On the other hand, the binding of plastoquinol (PQH2) to Q(C) is assumed to cause a marked decrease of E(m), thus, giving rise to a PQH2 oxidase function of Cyt b559. The possible physiological role of the Q(C) site as a regulator of the reactivity of Cyt b559 is discussed.


Subject(s)
Cytochrome b Group/chemistry , Cytochrome b Group/metabolism , Photosystem II Protein Complex/chemistry , Photosystem II Protein Complex/metabolism , 2,4-Dinitrophenol/analogs & derivatives , 2,4-Dinitrophenol/pharmacology , Beta vulgaris/drug effects , Beta vulgaris/metabolism , Binding Sites , Carbonyl Cyanide m-Chlorophenyl Hydrazone/pharmacology , Cytochrome b Group/drug effects , Diuron/pharmacology , Herbicides/chemistry , Herbicides/metabolism , Herbicides/pharmacology , Oxidation-Reduction , Photosystem II Protein Complex/drug effects , Quinones/metabolism , Tetraphenylborate/pharmacology
6.
J Plant Physiol ; 160(1): 41-9, 2003 Jan.
Article in English | MEDLINE | ID: mdl-12685044

ABSTRACT

The presence of 1.0 mol/L glycinebetaine during isolation of D1/D2/Cytb559 reaction centre (RC) complexes from photosystem II (PSII) membrane fragments preserved the photochemical activity, monitored as the light-induced reduction of pheophytin and electron transport from diphenylcarbazide to 2.6-dichlorophenol-indophenol.-Glycinebetaine also protected the D1/D2/Cytb559 complexes against strong light-induced damage to the photochemical reactions and the irreversible bleaching of beta-carotene and chlorophyll. The presence of glycinebetaine also enhanced thermotolerance of the D1/D2/Cytb559 complexes isolated in the presence of 1.0 mol/L betaine with an increase in the temperature for 50% inactivation from 29 degrees C to 35 degrees C. The results indicate an increased supramolecular structural stability in the presence of glycinebetaine.


Subject(s)
Betaine/pharmacology , Cytochrome b Group/metabolism , Photosynthetic Reaction Center Complex Proteins/metabolism , Photosystem II Protein Complex , 2,6-Dichloroindophenol/metabolism , Chlorophyll/metabolism , Cytochrome b Group/drug effects , Cytochrome b Group/radiation effects , Diphenylcarbazide/metabolism , Electron Transport , Hot Temperature , Light-Harvesting Protein Complexes , Oxidation-Reduction , Pheophytins/metabolism , Photobleaching , Photochemistry , Photosynthetic Reaction Center Complex Proteins/antagonists & inhibitors , Photosynthetic Reaction Center Complex Proteins/drug effects , Photosynthetic Reaction Center Complex Proteins/radiation effects , Quinones/metabolism , Spinacia oleracea/drug effects , Spinacia oleracea/metabolism , Spinacia oleracea/radiation effects , beta Carotene/metabolism
7.
Biochem J ; 371(Pt 2): 597-601, 2003 Apr 15.
Article in English | MEDLINE | ID: mdl-12529178

ABSTRACT

We have found that elevated copper concentrations, apart from the inhibition of oxygen evolution, changed the initial states distribution of the oxygen-evolving complex. Already at low concentrations, copper ions oxidized the low-potential form of cytochrome b (559) and also its high-potential form at higher concentrations at which fluorescence quenching was observed. We suggest that the primary target sites in Photosystem II for copper is tyrosine(z), both cytochrome b (559) forms and chlorophyll(z), and that these sites are the source of the copper-induced fluorescence quenching and oxygen evolution inhibition in Photosystem II.


Subject(s)
Cytochrome b Group/metabolism , Nicotiana/metabolism , Oxygen/metabolism , Photosynthetic Reaction Center Complex Proteins/metabolism , Photosystem II Protein Complex , Copper/pharmacology , Cytochrome b Group/drug effects , Kinetics , Light-Harvesting Protein Complexes , Models, Biological , Oxidation-Reduction , Photosynthetic Reaction Center Complex Proteins/drug effects
8.
Plant Physiol ; 130(3): 1414-25, 2002 Nov.
Article in English | MEDLINE | ID: mdl-12428006

ABSTRACT

The role of growth temperature and growth irradiance on the regulation of the stoichiometry and function of the photosynthetic apparatus was examined in the cyanobacterium Plectonema boryanum UTEX 485 by comparing mid-log phase cultures grown at either 29 degrees C/150 micromol m(-2) s(-1), 29 degrees C/750 micromol m(-2) s(-1), 15 degrees C/150 micromol m(-2) s(-1), or 15 degrees C/10 micromol m(-2) s(-1). Cultures grown at 29 degrees C/750 micromol m(-2) s(-1) were structurally and functionally similar to those grown at 15 degrees C/150 micromol m(-2) s(-1), whereas cultures grown at 29 degrees C/150 micromol m(-2) s(-1) were structurally and functionally similar to those grown at 15 degrees C/10 micromol m(-2) s(-1). The stoichiometry of specific components of the photosynthetic apparatus, such as the ratio of photosystem (PS) I to PSII, phycobilisome size and the relative abundance of the cytochrome b(6)/f complex, the plastoquinone pool size, and the NAD(P)H dehydrogenase complex were regulated by both growth temperature and growth irradiance in a similar manner. This indicates that temperature and irradiance may share a common sensing/signaling pathway to regulate the stoichiometry and function of the photosynthetic apparatus in P. boryanum. In contrast, the accumulation of neither the D1 polypeptide of PSII, the large subunit of Rubisco, nor the CF(1) alpha-subunit appeared to be regulated by the same mechanism. Measurements of P700 photooxidation in vivo in the presence and absence of inhibitors of photosynthetic electron transport coupled with immunoblots of the NAD(P)H dehydrogenase complex in cells grown at either 29 degrees C/750 micromol m(-2) s(-1) or 15 degrees C/150 micromol m(-2) s(-1) are consistent with an increased flow of respiratory electrons into the photosynthetic intersystem electron transport chain maintaining P700 in a reduced state relative to cells grown at either 29 degrees C/150 micromol m(-2) s(-1) or 15 degrees C/10 micromol m(-2) s(-1). These results are discussed in terms of acclimation to excitation pressure imposed by either low growth temperature or high growth irradiance.


Subject(s)
Cyanobacteria/physiology , Photosynthetic Reaction Center Complex Proteins/metabolism , Proteins/metabolism , Acclimatization/physiology , Acclimatization/radiation effects , Bacterial Proteins/chemistry , Bacterial Proteins/metabolism , Bacterial Proteins/radiation effects , Chlorophyll/antagonists & inhibitors , Chlorophyll/metabolism , Cyanobacteria/radiation effects , Cytochrome b Group/drug effects , Cytochrome b Group/metabolism , Cytochrome b6f Complex , Cytochromes/drug effects , Cytochromes/metabolism , Cytochromes f , Electron Transport/physiology , Enzyme Inhibitors/pharmacology , Light , Light-Harvesting Protein Complexes , NADPH Dehydrogenase/drug effects , NADPH Dehydrogenase/metabolism , Oxidation-Reduction/drug effects , Photosynthetic Reaction Center Complex Proteins/chemistry , Photosynthetic Reaction Center Complex Proteins/radiation effects , Phycobilisomes , Plastoquinone/antagonists & inhibitors , Plastoquinone/metabolism , Proteins/chemistry , Proteins/radiation effects , Signal Transduction/drug effects , Signal Transduction/radiation effects , Temperature
9.
J Lab Clin Med ; 140(1): 9-16, 2002 Jul.
Article in English | MEDLINE | ID: mdl-12080323

ABSTRACT

Granulocyte colony-stimulating factor (GCSF) primes reduced neutrophil nicotinamide adenine dinucleotide phosphate (NADPH) oxidase activity in response to formyl peptide but does not increase oxidase activity when used alone. Both oxidase activity and degranulation require phospholipase D (PLD) activation, and exogenous C(2)-ceramide inhibits both functions through inhibition of PLD activity. We extended these observations to investigate neutrophil responses to GCSF. GCSF at a dosage of 30 to 100 ng/mL, a concentration range that primes superoxide release, stimulated a 60% to 100% increase in gelatinase release from tertiary granules but did not stimulate lactoferrin release from secondary granules. A 75% to 100% dose-dependent increase in PLD activity in GCSF-treated neutrophils was also observed. Gelatinase release and PLD activity were inhibited by 10 micromol/L C(2)-ceramide. The increase in gelatinase release in response to priming concentrations of GCSF suggests that tertiary granules contribute a component of the NADPH oxidase to the plasma membrane. Neutrophils treated with 50 ng/mL GCSF were found to contain 20% more cytochrome b(558) in the plasma membrane fraction than unstimulated cells, consistent with degranulation of only tertiary granules. Correspondingly, in the presence of 10 micromol/L C(2)-ceramide, cytochrome b(558) content in the plasma membrane did not increase after neutrophil activation. In contrast, GCSF did not lead to p47phox translocation to the plasma membrane or phosphorylation. Because phosphorylation and translocation of p47phox are required for oxidase activity, these findings account for the inability of GCSF alone to generate the respiratory burst. We conclude that translocation of cytochrome b(558) was responsible for GCSF priming of NADPH oxidase in neutrophils.


Subject(s)
Cytochrome b Group/blood , Gelatinases/blood , Granulocyte Colony-Stimulating Factor/pharmacology , NADPH Oxidases/blood , Neutrophils/physiology , Phospholipase D/blood , Secretory Vesicles/physiology , Sphingosine/analogs & derivatives , Cell Membrane/enzymology , Cytochrome b Group/drug effects , Cytosol/enzymology , Dose-Response Relationship, Drug , Filgrastim , Humans , Kinetics , N-Formylmethionine Leucyl-Phenylalanine/pharmacology , Neutrophils/drug effects , Neutrophils/ultrastructure , Protein Transport , Recombinant Proteins , Secretory Vesicles/drug effects , Sphingosine/pharmacology , Superoxides/blood
10.
Phytother Res ; 15(6): 501-5, 2001 Sep.
Article in English | MEDLINE | ID: mdl-11536379

ABSTRACT

The influence of Liv.100 on the hepatotoxicity of antituberculosis drugs [isoniazid (INH), rifampicin (RMP) pyrazinamide (PZA)] was studied in male albino rats. INH, RMP, and PZA were proved to be the most hepatotoxic. Rats were treated with antituberculosis drugs daily for a period of 6 weeks by intragastric administration. The combined use of antituberculosis drugs elevated the levels of cytochrome P-450 and cytochrome-b5. A significant increase was observed in the levels of NADPH-cytochrome P-450 reductase and NADH-cytochrome-b5 reductases after antitubercular drug administration. During antitubercular drug treatment a significant decrease was also observed in the activity of glucose-6-phosphatase. The extent of NADPH-induced and ascorbic acid-induced lipid peroxides were marked in antitubercular drug treatment, when compared with normal control animals. Oral Liv.100 co-administration, for the same period, modulated the alterations in the xenobiotic metabolizing system and microsomal lipid peroxidation in experimental animals. The results are discussed with reference to drug metabolizing enzymes, lipid peroxidation and the hepatoprotective nature of Liv.100.


Subject(s)
Antitubercular Agents/toxicity , Magnoliopsida , Medicine, Ayurvedic , Microsomes, Liver/drug effects , Phytotherapy , Plant Extracts/pharmacology , Animals , Ascorbic Acid/pharmacology , Cytochrome P-450 Enzyme System/drug effects , Cytochrome Reductases/drug effects , Cytochrome b Group/drug effects , Cytochrome-B(5) Reductase , Drug Interactions , Glucose-6-Phosphatase/drug effects , Herbal Medicine , India , Isoniazid/toxicity , Lipid Peroxidation/drug effects , Male , NADPH-Ferrihemoprotein Reductase/drug effects , Plant Extracts/therapeutic use , Plants, Medicinal , Protective Agents/pharmacology , Pyrazinamide/toxicity , Rats , Rats, Wistar , Rifampin/toxicity
11.
Nat Cell Biol ; 3(7): 679-82, 2001 Jul.
Article in English | MEDLINE | ID: mdl-11433301

ABSTRACT

The production of reactive oxygen species (ROS) by neutrophils has a vital role in defence against a range of infectious agents, and is driven by the assembly of a multi-protein complex containing a minimal core of five proteins: the two membrane-bound subunits of cytochrome b(558) (gp91(phox) and p22(phox)) and three soluble factors (GTP-Rac, p47(phox) and p67(phox) (refs 1, 2). This minimal complex can reconstitute ROS formation in vitro in the presence of non-physiological amphiphiles such as SDS. p40(phox) has subsequently been discovered as a binding partner for p67(phox) (ref. 3), but its role in ROS formation is unclear. Phosphoinositide-3-OH kinases (PI(3)Ks) have been implicated in the intracellular signalling pathways coordinating ROS formation but through an unknown mechanism. We show that the addition of p40(phox) to the minimal core complex allows a lipid product of PI(3)Ks, phosphatidylinositol 3-phosphate (PtdIns(3)P), to stimulate specifically the formation of ROS. This effect was mediated by binding of PtdIns(3)P to the PX domain of p40(phox). These results offer new insights into the roles for PI(3)Ks and p40(phox) in ROS formation and define a cellular ligand for the orphan PX domain.


Subject(s)
Neutrophils/enzymology , Oxidoreductases/blood , Oxidoreductases/drug effects , Phosphatidylinositol Phosphates/pharmacology , Phosphoproteins/metabolism , Animals , Binding Sites , Cytochrome b Group/drug effects , Cytochrome b Group/metabolism , Membranes, Artificial , Oxidation-Reduction , Phosphoproteins/chemistry , Protein Structure, Tertiary , Superoxides/metabolism , Swine
12.
J Infect Dis ; 183(5): 819-22, 2001 Mar 01.
Article in English | MEDLINE | ID: mdl-11181161

ABSTRACT

This retrospective cohort study was conducted to determine whether Pneumocystis carinii cytochrome b gene mutations in patients with AIDS and P. carinii pneumonia (PCP) are associated with atovaquone exposure. Portions of the P. carinii cytochrome b genes that were obtained from 60 patients with AIDS and PCP from 6 medical centers between 1995 and 1999 were amplified and sequenced by using polymerase chain reaction. Fifteen patients with previous atovaquone prophylaxis or treatment exposure were matched with 45 patients with no atovaquone exposure. Cytochrome b coenzyme Q binding site mutations were observed in 33% of isolates from patients exposed to atovaquone, compared with 6% from those who were not (P=.018). There was no difference in survival 1 month after treatment between patients with or without cytochrome b mutations (P=.14). Thus, cytochrome b mutations are significantly more common in patients with AIDS and PCP with atovaquone exposure, but the clinical significance of these mutations remains unknown.


Subject(s)
Acquired Immunodeficiency Syndrome/drug therapy , Antifungal Agents/adverse effects , Cytochrome b Group/genetics , Naphthoquinones/adverse effects , Pneumocystis/drug effects , Pneumonia, Pneumocystis/drug therapy , Adult , Antifungal Agents/therapeutic use , Atovaquone , Case-Control Studies , Cohort Studies , Cytochrome b Group/drug effects , Female , Gene Amplification , Humans , Male , Middle Aged , Molecular Sequence Data , Naphthoquinones/therapeutic use , Pneumocystis/genetics , Polymerase Chain Reaction , Polymorphism, Genetic , Retrospective Studies , Survival , Treatment Outcome , Ubiquinone/drug effects , Ubiquinone/genetics
13.
Curr Genet ; 37(5): 315-21, 2000 May.
Article in English | MEDLINE | ID: mdl-10853768

ABSTRACT

The potential for use of the cytochrome-pathway electron-transfer inhibitors antimycin A and myxothiazol in the selection of plant mitochondrial genome transformants was investigated. The net growth of Nicotiana tabacum L. (tobacco) suspension-culture cells was reduced by these inhibitors, but complete repression of cell growth occurred only in the presence of both cytochrome and alternative electron-transfer-pathway inhibitors. Antimycin A and myxothiazol bind to and block electron transfer through different sites in the cytochrome b (COB) subunit of the mitochondrial bc1 respiratory complex (complex III). The nucleotide sequence of the tobacco cob gene was determined and found to predict highly conserved glycine and phenylalanine residues that are associated with sensitivity to antimycin A and myxothiazol, respectively. These residues are altered by mutations that confer resistance to antimycin A or myxothiazol in diverse organisms. Tobacco cob cDNA clones were constructed and sequenced, revealing eight full and 11 partial RNA-editing sites. RNA editing did not, however, alter codons for the conserved glycine and phenylalanine residues associated with sensitivity to the respiratory inhibitors. Antimycin A or myxothiazol, in conjunction with a modified cob gene, may therefore be useful in the selection of tobacco cells carrying a genetically transformed mitochondrial genome.


Subject(s)
Antifungal Agents/pharmacology , Antimycin A/pharmacology , Apoproteins/genetics , Cytochrome b Group/genetics , Nicotiana/drug effects , Nicotiana/genetics , Plants, Toxic , Amino Acid Sequence , Apoproteins/drug effects , Apoproteins/metabolism , Cell Division/drug effects , Cell Respiration/drug effects , Cloning, Molecular , Cytochrome b Group/drug effects , Cytochrome b Group/metabolism , Cytochromes b , Methacrylates , Mitochondria/genetics , Molecular Sequence Data , RNA Editing , Sequence Analysis, DNA , Sequence Homology, Amino Acid , Thiazoles/pharmacology , Nicotiana/metabolism
14.
Biopolymers ; 56(2): 77-84, 2000.
Article in English | MEDLINE | ID: mdl-11592054

ABSTRACT

A new family of amphipols-amphiphilic polymers designed to form water-soluble complexes with membrane proteins-was synthesized by free-radical telomerization of Tris(hydroxymethyl)-acrylamidomethane (THAM) and derivatized THAM. Some of these polymers were found to prevent aggregation and denaturation of two model membrane proteins, bacteriorhodopsin and cytochrome b(6) f, in the absence of detergent micelles.


Subject(s)
Acrylamides/chemistry , Membrane Proteins/drug effects , Polymers/chemical synthesis , Polymers/pharmacology , Bacteriorhodopsins/chemistry , Bacteriorhodopsins/drug effects , Cytochrome b Group/chemistry , Cytochrome b Group/drug effects , Cytochrome b6f Complex , Drug Stability , Membrane Proteins/chemistry , Polymers/chemistry , Protein Conformation/drug effects , Solubility/drug effects
15.
J Antibiot (Tokyo) ; 52(8): 721-9, 1999 Aug.
Article in English | MEDLINE | ID: mdl-10580385

ABSTRACT

New antibiotic compounds, melithiazols, were isolated from the culture broth of strains of the myxobacteria Melittangium lichenicola, Archangium gephyra, and Myxococcus stipitatus. The compounds belong to the group of beta-methoxyacrylate (MOA) inhibitors and are related to the myxothiazols. The melithiazols show high antifungal activity, but are less toxic than myxothiazol A and its methyl ester in a growth inhibition assay with mouse cell cultures. The melithiazols inhibit NADH oxidation by submitochondrial particles from beef heart. Melithiazol A blocks the electron transport within the bc1-segment (complex III) and causes a red shift in the reduced spectrum of cytochrome b.


Subject(s)
Acrylates/isolation & purification , Acrylates/pharmacology , Antifungal Agents/isolation & purification , Antifungal Agents/pharmacology , Cell Respiration/drug effects , Myxococcales/metabolism , Thiazoles/isolation & purification , Thiazoles/pharmacology , Acrylates/chemistry , Acrylates/metabolism , Animals , Antifungal Agents/chemistry , Antifungal Agents/metabolism , Cytochrome b Group/drug effects , Cytochrome b Group/metabolism , Drug Evaluation, Preclinical , Energy Metabolism/drug effects , Fatty Acids, Unsaturated/chemistry , Fatty Acids, Unsaturated/pharmacology , Fermentation , Humans , Infant , Inhibitory Concentration 50 , Methacrylates , Mice , Microbial Sensitivity Tests , Mitochondria, Heart/drug effects , Mitochondria, Heart/metabolism , Myxococcales/chemistry , NAD/metabolism , Strobilurins , Structure-Activity Relationship , Thiazoles/chemistry , Thiazoles/metabolism
16.
Biochemistry ; 37(29): 10404-10, 1998 Jul 21.
Article in English | MEDLINE | ID: mdl-9671509

ABSTRACT

The effect of N,N'-dicyclohexylcarbodiimide (DCCD) on electron and proton transfers within the cytochrome (cyt) bf complex has been analyzed in living cells of the green algae Chlorella sorokiniana under anaerobic conditions. DCCD induces a partial decoupling of the protomotive Q-cycle, in agreement with the conclusions of Wang and Beattie (1991) Arch. Biochem. Biophys. 291, 363-370. In the presence of 20 microM DCCD, we observe the development of a lag phase in the kinetics of the slow electrogenic phase associated with electron and proton transfers within the cyt bf complex. In the same conditions, the initial rate of cyt b and cyt f reduction is decreased by about 30%. We propose that in the absence of DCCD, a transmembrane movement of proton is coupled to the oxidation of plastoquinol at site Qo. In the presence of 20 microM DCCD, this redox-coupled proton pump is inhibited, and the kinetics of phase b and cyt b reduction become close to that predicted on the basis of a pure Q-cycle process. In agreement with this hypothesis, we observe that upon a weak-flash excitation, two charges are translocated through the membrane in addition to the charge translocated at the level of photosystem I. Part of this large electrogenic phase could be associated with the translocation of a proton from the stroma to the lumen. A tentative mechanism is discussed that remains in the frame of the Q-cycle but accounts for an additional proton-pumping process or for the partial decoupling observed in the presence of DCCD, as well.


Subject(s)
Chlorella/enzymology , Cytochrome b Group/drug effects , Cytochrome b Group/metabolism , Dicyclohexylcarbodiimide/pharmacology , Protons , Anaerobiosis , Chlorella/drug effects , Cytochrome b Group/antagonists & inhibitors , Cytochrome b6f Complex , Electron Transport/drug effects , Hydrogen-Ion Concentration , Kinetics , Models, Chemical , Oxidation-Reduction/drug effects , Photosynthetic Reaction Center Complex Proteins/drug effects , Photosynthetic Reaction Center Complex Proteins/metabolism , Photosystem I Protein Complex , Proton Pump Inhibitors
17.
Biochemistry ; 37(28): 9999-10005, 1998 Jul 14.
Article in English | MEDLINE | ID: mdl-9665705

ABSTRACT

When unicellular algal cells are placed under anaerobic conditions, a large electrochemical gradient is built in darkness across the thylakoid membranes. We have estimated, in vivo, the amplitude of the Delta pH component of this transmembrane potential and shown that the Delta pH is twice as large as the Delta Psi. The amplitude of the Delta mu tildeH+ (approximately 110-140 mV) fits well with estimations based on the ATP/ADP ratio measured in green algae under the same conditions, suggesting that an equilibrium state is established across the thylakoid membrane. Therefore, under anaerobic dark incubation of algae, the electrochemical transmembrane potential is determined only by the cellular ATP content. The existence of this Delta mu tildeH+ is expected to result in a constitutive amount of activated CFo-CF1 ATPase, thereby facilitating ATP synthesis under low light intensity illumination. We report also on the effects of this dark-existing electrochemical gradient on the cytochrome b6f complex turnover kinetics. We show that they are largely slowed by the presence of this electrochemical transmembrane potential. The pH component is mainly responsible for the kinetic slowing down of cytochrome b6f complex turnover, despite the fact that electrogenicity is associated with the reactions taking place within this complex. Therefore, in vivo, owing to the low lumenal pH, the oxidation of plastoquinol at the Qo site is limiting the turnover of the cytochrome b6f complex in the presence of the Delta pH, while in its absence the oxidation rate of the b6 hemes becomes rate-limiting.


Subject(s)
Chlorella/enzymology , Cytochrome b Group/metabolism , Adenosine Triphosphate/biosynthesis , Anaerobiosis , Carbonyl Cyanide p-Trifluoromethoxyphenylhydrazone/pharmacology , Chlorella/drug effects , Chlorella/metabolism , Chloroplasts/enzymology , Cytochrome b Group/chemistry , Cytochrome b Group/drug effects , Cytochrome b6f Complex , Darkness , Electrochemistry , Electron Transport , Hydrogen-Ion Concentration , Kinetics , Nigericin/pharmacology , Oxidation-Reduction/drug effects , Plastoquinone/analogs & derivatives , Plastoquinone/metabolism , Protons
18.
J Mol Neurosci ; 9(3): 167-76, 1997 Dec.
Article in English | MEDLINE | ID: mdl-9481618

ABSTRACT

Antidepressant therapies include drugs with a remarkable structural diversity and non-pharmacological interventions, such as electroconvulsive shock. Although the primary neurochemical effects of these treatments may differ, the > or = 2- to 3-wk lag in therapeutic onset has led to the hypothesis that adaptive changes in a final common pathway are required for an antidepressant action. Based on this hypothesis, we sought to identify and characterize common changes in gene expression following chronic antidepressant treatments. We utilized a differential display strategy to identify genes that were differentially expressed in mice following chronic treatment with imipramine and electroconvulsive shock. Differential display PCR followed by subcloning, screening by reverse Northern blot, and confirmation by Northern blot revealed a significant increase in the expression of one gene candidate from mouse cortex following antidepressant treatments. The sequence of this 193-bp gene candidate was an exact match to the DNA sequence of mouse mitochondrial cytochrome b. In contrast to the increased mRNA levels of cytochrome b found in cortex, chronic treatment with these antidepressants did not alter mRNA levels in hippocampus, cerebellum, or liver. Moreover, no differences in cortical levels of cytochrome b mRNA were observed after either acute antidepressant treatments or chronic treatment with nonantidepressant drugs (haloperidol and morphine). The observation that chronic, but not acute treatment with imipramine and electroconvulsive shock produces a region-specific change in the levels of mRNA encoding cytochrome b suggests that this enzyme may be involved in the sequence of events resulting in an antidepressant action.


Subject(s)
Antidepressive Agents/administration & dosage , Cerebral Cortex/drug effects , Cytochrome b Group/genetics , RNA, Messenger/drug effects , Animals , Cerebral Cortex/metabolism , Cytochrome b Group/drug effects , Cytochrome b Group/metabolism , Drug Administration Schedule , Electroshock/adverse effects , Gene Expression Regulation/drug effects , Haloperidol/administration & dosage , Imipramine/administration & dosage , Injections, Intraperitoneal , Male , Mice , Morphine/administration & dosage , RNA, Messenger/metabolism
19.
FEBS Lett ; 377(3): 325-9, 1995 Dec 27.
Article in English | MEDLINE | ID: mdl-8549748

ABSTRACT

EPR properties of Cyt b-559 have been investigated in intact chloroplasts that are functionally competent in O2 evolution and in CO2 fixation. After chemical oxidation of Cyt b-559 by 10 mM 2,3-dicyano, 4,5-dichloro-p-benzoquinone (DDQ) the major part of Cyt b-559 is found to be present in the high spin Fe(III) form. Only a small fraction of low spin heme Fe(III) (less than 5%) was formed by chemical or light-induced oxidation. This fraction increased during aging of intact chloroplasts. A comparison with the EPR signal of Fe(III) in myoglobin (Mb) reveals that the structure of the high spin signal in intact chloroplasts is indicative for the presence of an axial OH- ligand at the heme Fe(III). This type of ligation comprised a considerable part (approximately 40%) of the total Cyt b-559 content. Removal of the Mn-cluster caused a change of the EPR parameters of OH- ligation. When in intact chloroplasts the heme Fe is chemically oxidized to Fe(III) ligated by OH-, this OH- ligation disappeared after a subsequent illumination at 80K by red light. Upon illumination at 140K this disappearance was accompanied by the formation of a high spin Fe(III) that is not ligated by OH-. These results are discussed in terms of removal of OH- from Fe(III) caused by structural changes or photooxidation at a complex of Cyt b-559 that could possibly also comprise the Mn-cluster. This photooxidation is assumed to be accompanied by the formation of a bound OH. radical. The possibility is discussed that this process is related to photosynthetic water oxidation.


Subject(s)
Chloroplasts/chemistry , Cytochrome b Group/chemistry , Heme/chemistry , Photosynthesis , Photosystem II Protein Complex , Benzoquinones/pharmacology , Chloroplasts/metabolism , Chloroplasts/radiation effects , Cold Temperature , Cytochrome b Group/drug effects , Cytochrome b Group/metabolism , Electron Spin Resonance Spectroscopy , Ferric Compounds/chemistry , Heme/metabolism , Hydroxides/chemistry , Hydroxylamine , Hydroxylamines/pharmacology , Light , Oxidation-Reduction , Spinacia oleracea
20.
J Biol Chem ; 270(27): 16428-34, 1995 Jul 07.
Article in English | MEDLINE | ID: mdl-7608214

ABSTRACT

Cytochrome b558 isolated from human neutrophils was inactive and contained no detectable FAD. However, high NADPH oxidase activity was seen upon reconstitution of the cytochrome with either native FAD or 8-mercapto-FAD in the presence of phospholipids (phosphatidylcholine/phosphatidylethanolamine/phosphatidylinositol/ sphingomyelin/cholesterol, 4:2:1:3:3 (w/w)). Their cell-free superoxide-generating activities were 40.5 and 35.5 mol/s/mol of heme, respectively, which corresponded to 70 and 61% of the original activity of the plasma membranes. Both flavins co-eluted with heme and protein on gel exclusion chromatography. The respective specific flavin content was 6.45 and 7.93 nmol/mg of protein and corresponded to a flavin:heme molar ratio of 0.41 and 0.51 consistent with a 2:1 ratio of heme to flavin. Mixing of 8-mercapto-FAD with flavin-depleted cytochrome b558 caused a red-shift of the flavin absorption maximum from 520 nm to around 560 nm, as has been seen when a variety of other apoflavoprotein dehydrogenases bind this analog. The 8-mercapto-FAD reconstituted into the cytochrome reacted readily with either iodoacetamide (k = 38.8 M-1.min-1) or iodoacetic acid (k = 12.1 M-1.min-1) to give a fluorescence spectrum characteristic of a 8-mercaptoflavin derivative, 8-SCH2CONH2 FAD or 8-SCH2COOH FAD. These results indicate that position 8 of FAD bound to the protein is freely accessible to solvent. These studies support the idea that cytochrome b558 is a flavocytochrome.


Subject(s)
Cytochrome b Group/metabolism , Flavin-Adenine Dinucleotide/analogs & derivatives , Flavoproteins/metabolism , Membrane Proteins/metabolism , Neutrophils/enzymology , Apoenzymes , Binding Sites , Blotting, Western , Cell-Free System , Cytochrome b Group/chemistry , Cytochrome b Group/drug effects , Cytochrome b Group/isolation & purification , Flavin-Adenine Dinucleotide/pharmacology , Flavoproteins/chemistry , Flavoproteins/drug effects , Flavoproteins/isolation & purification , Humans , Iodoacetamide/pharmacology , Membrane Proteins/chemistry , Membrane Proteins/drug effects , Membrane Proteins/isolation & purification , Molecular Probes , NADH, NADPH Oxidoreductases/analysis , NADPH Oxidases , Spectrometry, Fluorescence , Superoxides/metabolism , Water
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