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1.
J Pharmacol Exp Ther ; 375(3): 451-462, 2020 12.
Article in English | MEDLINE | ID: mdl-32981893

ABSTRACT

Halogenated tyrosine/phenylalanine derivatives have been developed for use in tumor imaging and targeted alpha therapy. 3-Fluoro-α-methyl-l-tyrosine (FAMT), targeting amino acid transporter LAT1 (SLC7A5), is a cancer-specific positron emission tomography probe that exhibits high renal accumulation, which is supposed to be mediated by organic anion transporter OAT1 (SLC22A6). In the present study, we investigated the structural requirements of FAMT essential for interaction with OAT1. OAT1 transported FAMT with a K m of 171.9 µM. In structure-activity relationship analyses, removal of either the 3-halogen or 4-hydroxyl group from FAMT or its structural analog 3-iodo-α-methyl-l-tyrosine greatly decreased the interaction with OAT1, reducing the [14C]p-aminohippurate uptake inhibition and the efflux induction. By contrast, the α-methyl group, which is essential for LAT1 specificity, contributed to a lesser degree. In fluorinated tyrosine derivatives, fluorine at any position was accepted by OAT1 when there was a hydroxyl group at the ortho-position, whereas ortho-fluorine was less interactive when a hydroxyl group was at meta- or para-positions. The replacement of the ortho-fluorine with a bulky iodine atom greatly increased the interaction. In in vivo studies, probenecid decreased the renal accumulation (P < 0.001) and urinary excretion (P = 0.0012) of FAMT, whereas the plasma concentration was increased, suggesting the involvement of OAT1-mediated transepithelial organic anion excretion. LAT1-specific 2-fluoro-α-methyltyrosine, which had lower affinity for OAT1, exhibited lower renal accumulation (P = 0.0142) and higher tumor uptake (P = 0.0192) compared with FAMT. These results would provide a basis to design tumor-specific compounds that can avoid renal accumulation for tumor imaging and targeted alpha therapy. SIGNIFICANCE STATEMENT: We revealed the structural characteristics of halogenated tyrosine derivatives essential for interaction with the organic anion transporter responsible for their renal accumulation. We have confirmed that such interactions are important for renal handling and tumor uptake. The critical contribution of hydroxyl and halogen groups and their positions as well as the role of α-methyl group found in the present study may facilitate the development of tumor-specific compounds while avoiding renal accumulation for use in tumor imaging and targeted alpha therapy.


Subject(s)
Kidney/diagnostic imaging , Methyltyrosines/metabolism , Molecular Imaging/methods , Organic Anion Transport Protein 1/metabolism , Animals , Cell Line, Tumor , Humans , Methyltyrosines/chemistry , Methyltyrosines/pharmacokinetics , Mice , Protein Binding , Tissue Distribution
2.
J Biochem ; 168(5): 509-514, 2020 Nov 01.
Article in English | MEDLINE | ID: mdl-32569353

ABSTRACT

l-Amino acid oxidase (LAAO) is widely distributed in nature and shows important biological activity. It induces cell apoptosis and has antibacterial properties. This study was designed to investigate the effect of methyl substituent on its activity as methylated derivatives of l-tyrosine, labelled with short-lived B+ emitters, have been used in oncological diagnostics. To study isotope effects in the oxidative deamination of O-methyl-l-tyrosine, the deuterated isotopomer, i.e. O-methyl-[2-2H]-l-tyrosine, was synthesized by isotope exchange, catalyzed enzymatically by tryptophanase. Isotope effects were determined using the spectrophotometric non-competitive method. The values of isotope effects indicate that the α-C-H bond cleavage occurs in the rate determining step of the investigated reaction and α-hydrogen plays a role in the substrate binding process at the enzyme active site. The inhibitory effect on LAAO activity was studied with α-methyl-l-tyrosine and N-methyl-l-tyrosine. The mode of inhibition was determined based on Lineweavear-Burk plots intersections. α-Methyl-l-tyrosine has been found a mixed type inhibitor of the investigated enzyme, whereas N-methyl-l-tyrosine is a non-competitive inhibitor of LAAO.


Subject(s)
L-Amino Acid Oxidase/chemistry , Methyltyrosines/chemistry , Tyrosine/analogs & derivatives , Animals , Catalysis , Crotalus/metabolism , Isotope Labeling , Kinetics , L-Amino Acid Oxidase/antagonists & inhibitors , L-Amino Acid Oxidase/metabolism , Methylation , Methyltyrosines/pharmacology , Substrate Specificity , Tyrosine/chemistry , Tyrosine/pharmacology
3.
Acta Crystallogr C Struct Chem ; 76(Pt 4): 328-345, 2020 04 01.
Article in English | MEDLINE | ID: mdl-32229714

ABSTRACT

Recently, fluorenylmethoxycarbonyl (Fmoc) amino acids (e.g. Fmoc-tyrosine or Fmoc-phenylalanine) have attracted growing interest in biomedical research and industry, with special emphasis directed towards the design and development of novel effective hydrogelators, biomaterials or therapeutics. With this in mind, a systematic knowledge of the structural and supramolecular features in recognition of those properties is essential. This work is the first comprehensive summary of noncovalent interactions combined with a library of supramolecular synthon patterns in all crystal structures of amino acids with the Fmoc moiety reported so far. Moreover, a new Fmoc-protected amino acid, namely, 2-{[(9H-fluoren-9-ylmethoxy)carbonyl](methyl)amino}-3-{4-[(2-hydroxypropan-2-yl)oxy]phenyl}propanoic acid or N-fluorenylmethoxycarbonyl-O-tert-butyl-N-methyltyrosine, Fmoc-N-Me-Tyr(t-Bu)-OH, C29H31NO5, was successfully synthesized and the structure of its unsolvated form was determined by single-crystal X-ray diffraction. The structural, conformational and energy landscape was investigated in detail by combined experimental and in silico approaches, and further compared to N-Fmoc-phenylalanine [Draper et al. (2015). CrystEngComm, 42, 8047-8057]. Geometries were optimized by the density functional theory (DFT) method either in vacuo or in solutio. The polarizable conductor calculation model was exploited for the evaluation of the hydration effect. Hirshfeld surface analysis revealed that H...H, C...H/H...C and O...H/H...O interactions constitute the major contributions to the total Hirshfeld surface area in all the investigated systems. The molecular electrostatic potentials mapped over the surfaces identified the electrostatic complementarities in the crystal packing. The prediction of weak hydrogen-bonded patterns via Full Interaction Maps was computed. Supramolecular motifs formed via C-H...O, C-H...π, (fluorenyl)C-H...Cl(I), C-Br...π(fluorenyl) and C-I...π(fluorenyl) interactions are observed. Basic synthons, in combination with the Long-Range Synthon Aufbau Modules, further supported by energy-framework calculations, are discussed. Furthermore, the relevance of Fmoc-based supramolecular hydrogen-bonding patterns in biocomplexes are emphasized, for the first time.


Subject(s)
Amino Acids/chemistry , Fluorenes/chemical synthesis , Methyltyrosines/chemistry , Phenylalanine/chemistry , Amino Acids/chemical synthesis , Computer Simulation , Crystallography, X-Ray , Fluorenes/chemistry , Hydrogen Bonding , Molecular Conformation , Surveys and Questionnaires
4.
Isotopes Environ Health Stud ; 54(5): 548-557, 2018 Oct.
Article in English | MEDLINE | ID: mdl-30081668

ABSTRACT

To investigate isotope effects in the hydroxylation of [3',5'-2H2]-α-methyl- and [3',5'-2H2]-N-methyl-l-tyrosine, they were synthesised using acid catalysed isotope exchange at high temperature. The kinetic and solvent deuterium isotope effects on Vmax and Vmax/Km parameters of tyrosinase in its action on methylated derivatives of l-tyrosine were determined using the non-competitive spectrophotometric method. Lineweaver-Burk plots were used to consider the inhibition type of O-methyl-l-tyrosine, revealing that it is an uncompetitive inhibitor of tyrosinase.


Subject(s)
Deuterium/chemistry , Methyltyrosines/metabolism , Monophenol Monooxygenase/metabolism , Tyrosine/metabolism , Hydroxylation , Kinetics , Levodopa/metabolism , Magnetic Resonance Spectroscopy , Methyltyrosines/chemistry , Monophenol Monooxygenase/chemistry , Solvents , Tyrosine/chemistry
5.
Int J Mol Sci ; 16(3): 4918-46, 2015 Mar 04.
Article in English | MEDLINE | ID: mdl-25749472

ABSTRACT

The lack of specificity of traditional cytotoxic drugs has triggered the development of anticancer agents that selectively address specific molecular targets. An intrinsic property of these specialized drugs is their limited applicability for specific patient subgroups. Consequently, the generation of information about tumor characteristics is the key to exploit the potential of these drugs. Currently, cancer stratification relies on three approaches: Gene expression analysis and cancer proteomics, immunohistochemistry and molecular imaging. In order to enable the precise localization of functionally expressed targets, molecular imaging combines highly selective biomarkers and intense signal sources. Thus, cancer stratification and localization are performed simultaneously. Many cancer types are characterized by altered receptor expression, such as somatostatin receptors, folate receptors or Her2 (human epidermal growth factor receptor 2). Similar correlations are also known for a multitude of transporters, such as glucose transporters, amino acid transporters or hNIS (human sodium iodide symporter), as well as cell specific proteins, such as the prostate specific membrane antigen, integrins, and CD20. This review provides a comprehensive description of the methods, targets and agents used in molecular imaging, to outline their application for cancer stratification. Emphasis is placed on radiotracers which are used to identify altered expression patterns of cancer associated markers.


Subject(s)
Neoplasms/diagnostic imaging , Biomarkers, Tumor/metabolism , Fluorodeoxyglucose F18/chemistry , Folate Receptors, GPI-Anchored/metabolism , Humans , Integrins/metabolism , Magnetic Resonance Imaging , Methyltyrosines/chemistry , Positron-Emission Tomography , Radiopharmaceuticals/chemistry , Receptor, ErbB-2/metabolism , Tomography, X-Ray Computed
6.
Methods Cell Biol ; 122: 147-63, 2014.
Article in English | MEDLINE | ID: mdl-24857729

ABSTRACT

The vast number of cellular proteins performs their roles within macromolecular assemblies and functional cell networks. Hence, an understanding of how multiprotein complexes are formed and modified during biogenesis is a key problem in cell biology. Here, we describe a detailed protocol for a nonradioactive pulse-chase in vivo-labeling approach. The method is based on the incorporation of an unnatural amino acid (O-methyl-tyrosine) by the nonsense suppression of an amber stop codon that quickly fuses an affinity tag of choice to a protein of interest. This affinity tag could be used to directly isolate the newly synthesized proteins and hence allows for the characterization of early complex biogenesis intermediates. Combined with a tetracycline controllable riboswitch in the 5'-UTR of the respective mRNA, this approach became a versatile tool to study dynamic protein assembly within cellular networks (Stelter et al., 2012). In the context of this volume, this method notably provides a suitable approach to study NPC, ribosome and mRNP biogenesis, or nuclear protein translocation. This chapter includes detailed protocols to track newly synthesized, epitope pulsed-chased proteins by western blot, their assembly within complexes using immunoprecipitation, and their subcellular localization using indirect immunofluorescence or subcellular fractionation. While these protocols use budding yeast as model system, this method can be adapted to other model systems.


Subject(s)
Methyltyrosines/genetics , Multiprotein Complexes/metabolism , Nuclear Pore Complex Proteins/biosynthesis , Nuclear Pore Complex Proteins/metabolism , Saccharomyces cerevisiae/metabolism , Base Sequence , Codon, Terminator/genetics , Epitopes/metabolism , Fluorescent Antibody Technique, Indirect , Immunoprecipitation , Methyltyrosines/chemistry , Multiprotein Complexes/biosynthesis , Protein Processing, Post-Translational , RNA, Messenger/genetics , Ribosome Subunits, Large, Eukaryotic/metabolism , Riboswitch/genetics , Saccharomyces cerevisiae/cytology , Saccharomyces cerevisiae/genetics , Saccharomyces cerevisiae Proteins/genetics , Saccharomyces cerevisiae Proteins/metabolism , Staining and Labeling
7.
ACS Chem Biol ; 6(7): 733-43, 2011 Jul 15.
Article in English | MEDLINE | ID: mdl-21545173

ABSTRACT

Unnatural amino acids (Uaas) can be translationally incorporated into proteins in vivo using evolved tRNA/aminoacyl-tRNA synthetase (RS) pairs, affording chemistries inaccessible when restricted to the 20 natural amino acids. To date, most evolved RSs aminoacylate Uaas chemically similar to the native substrate of the wild-type RS; these conservative changes limit the scope of Uaa applications. Here, we adapt Methanosarcina mazei PylRS to charge a noticeably disparate Uaa, O-methyl-l-tyrosine (Ome). In addition, the 1.75 Å X-ray crystal structure of the evolved PylRS complexed with Ome and a non-hydrolyzable ATP analogue reveals the stereochemical determinants for substrate selection. Catalytically synergistic active site mutations remodel the substrate-binding cavity, providing a shortened but wider active site. In particular, mutation of Asn346, a residue critical for specific selection and turnover of the Pyl chemical core, accommodates different side chains while the central role of Asn346 in aminoacylation is rescued through compensatory hydrogen bonding provided by A302T. This multifaceted analysis provides a new starting point for engineering PylRS to aminoacylate a significantly more diverse selection of Uaas than previously anticipated.


Subject(s)
Amino Acyl-tRNA Synthetases/chemistry , Amino Acyl-tRNA Synthetases/metabolism , Lysine/analogs & derivatives , Amino Acid Sequence , Amino Acid Substitution , Amino Acyl-tRNA Synthetases/genetics , Aminoacylation , Catalytic Domain , Crystallography, X-Ray , Directed Molecular Evolution , Escherichia coli/metabolism , HeLa Cells , Humans , Lysine/chemistry , Lysine/metabolism , Methanosarcina/enzymology , Methyltyrosines/chemistry , Methyltyrosines/metabolism , Molecular Sequence Data , Mutation , Protein Conformation , Structure-Activity Relationship , Substrate Specificity
8.
J Biol Chem ; 285(13): 9594-9603, 2010 Mar 26.
Article in English | MEDLINE | ID: mdl-20097757

ABSTRACT

Cytochrome P450 enzymes are versatile catalysts involved in a wide variety of biological processes from hormonal regulation and antibiotic synthesis to drug metabolism. A hallmark of their versatility is their promiscuous nature, allowing them to recognize a wide variety of chemically diverse substrates. However, the molecular details of this promiscuity have remained elusive. Here, we have utilized two-dimensional heteronuclear single quantum coherence NMR spectroscopy to examine a series of mutants site-specific labeled with the unnatural amino acid, [(13)C]p-methoxyphenylalanine, in conjunction with all-atom molecular dynamics simulations to examine substrate and inhibitor binding to CYP119, a P450 from Sulfolobus acidocaldarius. The results suggest that tight binding hydrophobic ligands tend to lock the enzyme into a single conformational substate, whereas weak binding low affinity ligands bind loosely in the active site, resulting in a distribution of localized conformers. Furthermore, the molecular dynamics simulations suggest that the ligand-free enzyme samples ligand-bound conformations of the enzyme and, therefore, that ligand binding may proceed largely through a process of conformational selection rather than induced fit.


Subject(s)
Archaeal Proteins/chemistry , Cytochrome P-450 Enzyme System/chemistry , Magnetic Resonance Spectroscopy/methods , Sulfolobus acidocaldarius/enzymology , Binding Sites , Catalysis , Catalytic Domain , Crystallography, X-Ray/methods , Lauric Acids/chemistry , Ligands , Methyltyrosines/chemistry , Models, Molecular , Mutation , Protein Conformation , Spectrophotometry/methods
9.
J Am Chem Soc ; 130(48): 16168-9, 2008 Dec 03.
Article in English | MEDLINE | ID: mdl-18998650

ABSTRACT

Conformational dynamics are thought to play an important role in ligand binding and catalysis by cytochrome P450 enzymes, but few techniques exist to examine them in molecular detail. Using a unique isotopic labeling strategy, we have site specifically inserted a (13)C-labeled unnatural amino acid residue, (13)C-p-methoxyphenylalanine (MeOF), into two different locations in the substrate binding region of the thermophilic cytochrome P450 enzyme CYP119. Surprisingly, in both cases the resonance signal from the ligand-free protein is represented by a doublet in the (1)H,(13)C-HSQC spectrum. Upon binding of 4-phenylimidazole, the signals from the initial resonances are reduced in favor of a single new resonance, in the case of the F162MeOF mutant, or two new resonances, in the case of the F153MeOF mutant. This represents the first direct physical evidence for the ligand-dependent existence of multiple P450 conformers simultaneously in solution. This general approach may be used to further illuminate the role that conformational dynamics plays in the complex enzymatic phenomena exhibited by P450 enzymes.


Subject(s)
Amino Acids/chemistry , Amino Acids/metabolism , Archaeal Proteins/chemistry , Archaeal Proteins/metabolism , Cytochrome P-450 Enzyme System/chemistry , Cytochrome P-450 Enzyme System/metabolism , Methyltyrosines/chemistry , Ligands , Nuclear Magnetic Resonance, Biomolecular , Protein Conformation
10.
Nat Protoc ; 2(10): 2590-600, 2007.
Article in English | MEDLINE | ID: mdl-17948002

ABSTRACT

The genetic code of living organisms has been expanded to allow the site-specific incorporation of unnatural amino acids into proteins in response to the amber stop codon UAG. Numerous amino acids have been incorporated including photo-crosslinkers, chemical handles, heavy atoms and post-translational modifications, and this has created new methods for studying biology and developing protein therapeutics and other biotechnological applications. Here we describe a protocol for reprogramming the amino-acid substrate specificity of aminoacyl-tRNA synthetase enzymes that are orthogonal in eukaryotic cells. The resulting aminoacyl-tRNA synthetases aminoacylate an amber suppressor tRNA with a desired unnatural amino acid, but no natural amino acids, in eukaryotic cells. To achieve this change of enzyme specificity, a library of orthogonal aminoacyl-tRNA synthetase is generated and genetic selections are performed on the library in Saccharomyces cerevisiae. The entire protocol, including characterization of the evolved aminoacyl-tRNA synthetase in S. cerevisiae, can be completed in approximately 1 month.


Subject(s)
Amino Acids/chemistry , Amino Acyl-tRNA Synthetases/chemistry , Genetic Code , Protein Engineering/methods , Eukaryotic Cells , Gene Library , Methyltyrosines/chemistry , Methyltyrosines/genetics , Mutagenesis , Plasmids/genetics , Saccharomyces cerevisiae/genetics , Substrate Specificity , Transformation, Genetic
11.
Biomed Chromatogr ; 21(3): 273-8, 2007 Mar.
Article in English | MEDLINE | ID: mdl-17236239

ABSTRACT

Oxidative stress plays an important role in pathogenesis of many diseases. Measurement of 3-nitrotyrosine (NO(2)Tyr), as a potential biomarker for nitric oxide-mediated damage, has recently been the focus of particular attention. We have developed an HPLC method with NBD-F pre-column derivatization followed by C(18) cartridge cleaning. Using this method we achieved limits of detection of 0.5 and 1.1 nm for NO(2)Tyr and tyrosine (Tyr), respectively, close to that achieved by LS-MS/MS. NO(2)Tyr and tyrosine concentrations were linear over the calibration ranges 0.5-100 nm and 1-320 microm, respectively, with correlation coefficients greater than 0.95. To evaluate the utility of this assay in plasma we analysed samples obtained from smokers and non-smoking subjects. Consistent with the presence of elevated oxidative stress, the plasma NO(2)Tyr concentration and NO(2)Tyr:Tyr ratio of smokers were 17.42 +/- 11.6 nm and 0.263 +/- 0.192 nm/microm with 3.8 and 3.9 times higher (both p < 0.05), respectively, than that of non-smoker controls (4.54 +/- 2.75 nm and 0.067 +/- 0.050 nm/microm, respectively). In conclusion, we have developed a novel HPLC assay for NO(2)Tyr without MS detection that is applicable to clinical studies addressing the pathophysiology and importance of oxidative stress.


Subject(s)
4-Chloro-7-nitrobenzofurazan/chemistry , Chromatography, High Pressure Liquid/methods , Chromatography, Liquid/classification , Spectrometry, Fluorescence/methods , Tyrosine/analogs & derivatives , Tyrosine/blood , 4-Chloro-7-nitrobenzofurazan/analogs & derivatives , Adult , Humans , Indicators and Reagents , Male , Methyltyrosines/blood , Methyltyrosines/chemistry , Methyltyrosines/standards , Oxidative Stress , Plasma/chemistry , Reference Standards , Reproducibility of Results , Sensitivity and Specificity , Smoking/blood , Tyrosine/chemistry
12.
J Nucl Med ; 47(4): 679-88, 2006 Apr.
Article in English | MEDLINE | ID: mdl-16595503

ABSTRACT

UNLABELLED: The aim of this study was to investigate whether D-amino acid isomers of O-(11)C-methyl tyrosine ((11)C-CMT) and O-(18)F-fluoromethyl tyrosine ((18)F-FMT) were better than the corresponding L-isomers as tumor- detecting agents with PET in comparison with the difference between L- and D-methyl-(11)C-methionine ((11)C-MET). METHODS: L- and D-(11)C-MET, (11)C-CMT, and (18)F-FMT were injected intravenously into BALB/cA Jcl-nu mice bearing HeLa tumor cells. At 5, 15, 30, and 60 min after injection, normal abdominal organs and xenotransplanted HeLa cells were sampled, and the uptake of each ligand was determined. Metabolic analyses of these compounds in the plasma were also performed. Accumulation of the d-isomers of (11)C-MET, (11)C-CMT, and (18)F-FMT in turpentine-induced inflammatory tissue was assayed in comparison with (18)F-FDG. The whole-body distribution of each tracer was imaged with a planar positron imaging system (PPIS). RESULTS: Although the tumor uptake (standardized uptake value [SUV]) levels of the D-isomers of (11)C-MET, (11)C-CMT, and (18)F-FMT were 261%, 72%, and 95% of each L-isomer 60 min after administration, the tumor-to-blood ratios of these D-isomers were 130%, 140%, and 182% of the corresponding L-isomers. In the blood, the D-isomers of these labeled compounds revealed a relatively faster elimination rate compared with their L-isomers, with a high peak uptake in the blood and kidney 5 min after administration. Compared with the natural amino acid ligand l-(11)C-MET, the uptake of L-isomers of (11)C-CMT and (18)F-FMT was relatively low and stable in the abdominal organs, whereas D-isomers revealed much lower levels and faster clearance rates compared with corresponding L-isomers. Among the abdominal organs, the pancreas showed a relatively high uptake of (11)C-CMT and (18)F-FMT; the uptake of these D-isomers was much lower than that of L-isomers. Pretreatment with cycloheximide, a protein synthesis inhibitor, resulted in a marked reduction of L-(11)C-MET uptake and a slight reduction of D-(11)C-MET uptake into protein fractions, whereas no significant changes were detected with L- and D-(11)C-CMT and (18)F-FMT. D-Isomers of (11)C-MET, (11)C-CMT, and (18)F-FMT did not accumulate in turpentine-induced inflammatory tissue, where (18)F-FDG revealed a high uptake. Whole-body imaging with a PPIS provided consistent distribution data obtained from the tissue dissection analysis. CONCLUSION: These results suggest that D-isomers of (11)C-CMT and (18)F-FMT could be potentially better tracers than L- and D-(11)C-MET for tumor imaging with PET.


Subject(s)
Methionine , Methyltyrosines , Neoplasms, Experimental/diagnostic imaging , Radiopharmaceuticals , Tyrosine/analogs & derivatives , Animals , Carbon Radioisotopes , Female , Fluorine Radioisotopes , HeLa Cells , Humans , Inflammation/chemically induced , Inflammation/metabolism , Methionine/chemistry , Methionine/pharmacokinetics , Methyltyrosines/chemistry , Methyltyrosines/pharmacokinetics , Mice , Mice, Inbred C57BL , Mice, Nude , Neoplasm Transplantation , Neoplasms, Experimental/metabolism , Organ Specificity , Positron-Emission Tomography , Radiopharmaceuticals/chemistry , Radiopharmaceuticals/pharmacokinetics , Stereoisomerism , Structure-Activity Relationship , Transplantation, Heterologous , Turpentine , Tyrosine/chemistry , Tyrosine/pharmacokinetics , Whole Body Imaging
13.
Org Lett ; 5(22): 4049-52, 2003 Oct 30.
Article in English | MEDLINE | ID: mdl-14572246

ABSTRACT

[reaction: see text]. (-)-PF1163B, a new macrocyclic antifungal antibiotic isolated from Streptomyces sp., has been prepared in eight steps from (S)-citronellene. The key step is a ring-closing metathesis reaction of an ester and amide derivative obtained from a substituted N-methyl-l-tyrosine.


Subject(s)
Antifungal Agents/chemical synthesis , Molecular Conformation , Antifungal Agents/chemistry , Cyclization , Heterocyclic Compounds, 1-Ring/chemistry , Macrocyclic Compounds , Magnetic Resonance Spectroscopy , Methyltyrosines/chemistry , Molecular Structure , Monoterpenes/chemistry , Stereoisomerism
14.
Bioorg Med Chem Lett ; 13(10): 1733-5, 2003 May 19.
Article in English | MEDLINE | ID: mdl-12729653

ABSTRACT

Conjugation of ethylenediaminetetra-acetic acid (EDTA) to methyl tyrosinate generates a chelating peptoid EDTA bis-(methyl tyrosinate), (EBMT). Peroxynitrite-mediated nitration was studied for the free peptoid and its ferric and cupric complexes. The nitration products were monitored by electronic absorption spectroscopy at lambda(max) of 420 nm (mono-nitrated) and 440 nm (di-nitrated). Peak deconvolution was effected by pH manipulation as the mono-nitrated analogue of tyrosine exhibited a bathochromic shift from 365 nm (below its pK(a) of 6.8) to 420 nm. Rates of nitration were: free peptoid

Subject(s)
Chelating Agents/chemical synthesis , Free Radical Scavengers/chemical synthesis , Peptoids/chemical synthesis , Peroxynitrous Acid/chemistry , Chelating Agents/chemistry , Copper/chemistry , Edetic Acid/chemistry , Free Radical Scavengers/chemistry , Hydrogen-Ion Concentration , Inflammation/drug therapy , Iron/chemistry , Kinetics , Methyltyrosines/chemistry , Peptoids/chemistry , Spectrum Analysis
15.
Nucl Med Biol ; 30(1): 31-7, 2003 Jan.
Article in English | MEDLINE | ID: mdl-12493540

ABSTRACT

We examined transport of 3-[(125)I]iodo-alpha-methyl-L-tyrosine ([(125)I]IMT) in Xenopus laevis oocytes co-expressing human L-type amino acid transporter 1 (a component of system L) and human 4F2hc. Human LAT1 mediated transport of [(125)I]IMT. [(125)I]IMT uptake was decreased by the presence of L-isomers of Cys, Leu, Ileu, Phe, Met, Tyr, His, Trp and Val and D-isomers of Leu, Phe and Met. Human LAT1-mediated [(125)I]IMT uptake was highly stereoselective for the L-isomers of Tyr, His, Trp, Val and Ileu. To examine the effects of 3-iodination and alpha-methylation on IMT transport, kinetic parameters of IMT were compared with those of mother Tyr and 3-[(125)I]iodo-L-tyrosine (3-I-Tyr). Uptake of Tyr, 3-I-Tyr and [(125)I]IMT followed Michaelis-Menten kinetics, with K(m) values of 29.0 +/- 5.1, 12.6 +/- 6.1 and 22.6 +/- 4.1 microM, respectively. Neither the alpha-methyl group nor the size of the 3-iodinated Tyr residue was an obstacle to transport via hLAT1. Furthermore, affinity of IMT for hLAT1 is higher than that of the natural parent tyrosine. The level of efflux mediated by hLAT1 was highly stimulated by extracellularly applied L-Leu, suggesting exchange of [(125)I]IMT and L-Leu via hLAT1.


Subject(s)
Amino Acid Transport System L/metabolism , Fusion Regulatory Protein 1, Heavy Chain/metabolism , Methyltyrosines/pharmacokinetics , Oocytes/diagnostic imaging , Oocytes/metabolism , Amino Acid Transport System L/genetics , Animals , Cells, Cultured , Female , Fusion Regulatory Protein 1, Heavy Chain/genetics , Humans , Isomerism , Methyltyrosines/chemistry , Oocytes/chemistry , Radionuclide Imaging , Radiopharmaceuticals/chemistry , Radiopharmaceuticals/pharmacokinetics , Recombinant Proteins/metabolism , Reference Values , Tyrosine/chemistry , Xenopus laevis
16.
J Org Chem ; 67(26): 9210-5, 2002 Dec 27.
Article in English | MEDLINE | ID: mdl-12492322

ABSTRACT

beta-Methoxytyrosine (beta-OMeTyr) is a stereoundefined component of papuamides A and B, novel cyclodepsipeptides, with anti-HIV and cytotoxic activities. For structural determination and total synthesis of papuamides, all stereoisomers of beta-OMeTyr were stereoselectively prepared from (S)- and (R)-serine, respectively.


Subject(s)
Anti-HIV Agents/chemical synthesis , Antineoplastic Agents/chemical synthesis , Combinatorial Chemistry Techniques , Depsipeptides , Methyltyrosines/chemical synthesis , Peptides, Cyclic/chemical synthesis , Animals , Anti-HIV Agents/chemistry , Anti-HIV Agents/pharmacology , Antineoplastic Agents/chemistry , Antineoplastic Agents/pharmacology , Methyltyrosines/chemistry , Molecular Structure , Nuclear Magnetic Resonance, Biomolecular , Papua New Guinea , Peptides, Cyclic/chemistry , Peptides, Cyclic/pharmacology , Porifera/chemistry , Serine/chemistry , Spectroscopy, Fourier Transform Infrared , Stereoisomerism
17.
Proc Natl Acad Sci U S A ; 99(10): 6579-84, 2002 May 14.
Article in English | MEDLINE | ID: mdl-12011422

ABSTRACT

Although incorporation of amino acid analogs provides a powerful means of producing new protein structures with interesting functions, many amino acid analogs cannot be incorporated easily by using the wild-type aminoacyl-tRNA synthetase (aaRS). To be able to incorporate specific amino acid analogs site-specifically, it is useful to build a mutant aaRS that preferentially activates the analog compared with the natural amino acids. Experimental combinatorial studies to find such mutant aaRSs have been successful but can easily become costly and time-consuming. In this article, we describe the clash opportunity progressive (COP) computational method for designing a mutant aaRS to preferentially take up the analog compared with the natural amino acids. To illustrate this COP procedure, we apply it to the design of mutant Methanococcus jannaschii tyrosyl-tRNA synthetase (M.jann-TyrRS). Because the three-dimensional structure for M.jann-TyrRS was not available, we used the STRUCTFAST homology modeling procedure plus molecular dynamics with continuum solvent forces to predict the structure of wild-type M.jann-TyrRS. We validate this structure by predicting the binding site for tyrosine and calculating the binding energies of the 20 natural amino acids, which shows that tyrosine binds the strongest. With the COP design algorithm we then designed a mutant tyrosyl tRNA synthetase to activate O-methyl-l-tyrosine preferentially compared with l-tyrosine. This mutant [Y32Q, D158A] is similar to the mutant designed with combinatorial experiments, [Y32Q, D158A, E107T, L162P], by Wang et al. [Wang, L., Brock, A., Herberich, B. & Schultz, P. G. (2001) Science 292, 498-500]. We predict that the new one will have much greater activity while retaining significant discrimination between O-methyl-l-tyrosine and tyrosine.


Subject(s)
Methanococcus/enzymology , Methyltyrosines/chemistry , Tyrosine-tRNA Ligase/chemistry , Amino Acids , Crystallography, X-Ray , Models, Molecular , Mutagenesis , Protein Structure, Tertiary , Tyrosine-tRNA Ligase/genetics
18.
J Pept Sci ; 6(6): 280-9, 2000 Jun.
Article in English | MEDLINE | ID: mdl-10912908

ABSTRACT

Twelve new [Tyr(Me)1, Leu5]-enkephalin analogues with substituents at position 3' of the Tyr ring have been synthesized using traditional solution methods. The substituents were -CO2H, -CONH2, -CO2Me, -(E)-CH=NOH, -(E)-CH=NOMe and CH2OH. The analogues were C-terminated with methyl esters, amides or as free acids. In the in vitro biological assays a remarkable agonist activity to the opiate receptor mu in guinea pig ileum (GPI) relative to Leu-ENK was shown by the following: Leu-ENK, 100; [Tyr(Me)(3'-CO2Me)1, Leu-OMe5]-ENK (I), 8.1; [Tyr(Me)(3'-(E)-CH=NOH)1, Leu-OMe5]-ENK (VI), 26.2; [Tyr(Me)(3'-(E)-CH=NOH)1, Leu-OH5]-ENK (VII), 2.9; [Tyr(Me)(3'-(E)-CH=NOH)1, Leu-NH2(5)]-ENK (VIII), 4.7; and [Tyr(Me)(3'-CH2OH)1, Leu-OMe5]-ENK (X), 5.6. The agonist effect was naltrexone- or naloxone-reversible. The masking of the hydroxyl group in (E)-hydroxyiminomethyl group of analogue (VI) by O-methylation has totally abolished its GPI agonist activity. It seems that the (E)-CH=NOH group shows affinity and plays an analogous role to the phenol group Tyr1 in leucine-enkephalin and in the tyramine group of the opiate alkaloids. The analogues: [Tyr(Me)(3'-CO2Me)1, Leu-OMe5]-ENK (I), [Tyr(Me)(3'-CO2H)1, Leu-OMe5]-ENK (II), [Tyr(Me)(3'-CO2Me)1, Leu-NH2(5)]-ENK (III), [Tyr(Me)(3'-CO2H)1, Leu-NH2(5)]-ENK (IV), [Tyr(Me)(3'-CONH2)1, Leu-NH2(5)]-ENK (V), [Tyr(Me)(3'-(E)-CH=NOH)1, Leu-OMe5]-ENK (VI), [Tyr(Me)(3'-(E)-CH=NOH)1, Leu-OH5]-ENK (VII), [Tyr(Me)(3'-(E)-CH=NOH)1, Leu-NH2(5)]-ENK (VIII), [Tyr(Me)(3'-(E)-CH=NOMe)1, Leu-OMe5]-ENK (IX), [Tyr(Me)(3'-CH2OH)1, Leu-OMe5]-ENK (X), [Tyr(Me)(3'-CH2OH)1, Leu-OH5]-ENK (XI) and [Tyr(Me)(3'-CH2OH)1, Leu-NH2(5)]-ENK (XII) under testing had no significant agonist activity to the enkephalinergic receptor in mouse vas deferens (MVD). All methyl esters of synthesized analogues of [Leu5]-ENK showed higher activity to mu receptors than structurally identical C-terminal amides. It is a surprising result since usually C-terminate amides are stronger agonists than C-terminate esters.


Subject(s)
Amino Acids/chemistry , Leucine/chemistry , Leucine/chemical synthesis , Methyltyrosines/chemistry , Animals , Chromatography, High Pressure Liquid , Electrons , Guinea Pigs , Ileum/drug effects , Inhibitory Concentration 50 , Magnetic Resonance Spectroscopy , Male , Methyltyrosines/chemical synthesis , Mice , Models, Chemical , Ultraviolet Rays , Vas Deferens/drug effects
19.
J Med Chem ; 37(12): 1746-57, 1994 Jun 10.
Article in English | MEDLINE | ID: mdl-8021915

ABSTRACT

Topographic design of peptide ligands using specialized topographically constrained amino acids can provide new insights into the stereochemical requirements for delta opioid receptors. A highly constrained tyrosine derivative, (2S,3S)-beta-methyl-2',6'-dimethyltyrosine [(2S,3S)-TMT], was prepared by asymmetric synthesis and incorporated in [D-Pen2,D-Pen5] enkephalin (delta 1) and Deltorphin I (delta 2). The results of binding assays and bioassays showed that the two analogues (3 and 4) acted very differently at delta opioid receptors. Further pharmacological evaluations suggested that they actually interact primarily with the delta 1 and delta 2 receptor subtypes, respectively. These results, and conformational studies using NMR and computer-assisted modeling, provided insights into the different stereochemical requirements for these two delta opioid ligands to recognize the delta opioid receptor and its subtypes.


Subject(s)
Analgesics/chemistry , Methyltyrosines/chemistry , Peptides/chemistry , Receptors, Opioid, delta/drug effects , Amino Acid Sequence , Analgesics/metabolism , Analgesics/pharmacology , Animals , Enkephalin, D-Penicillamine (2,5)- , Enkephalins/chemistry , Guinea Pigs , In Vitro Techniques , Magnetic Resonance Spectroscopy , Male , Methyltyrosines/metabolism , Methyltyrosines/pharmacology , Mice , Mice, Inbred ICR , Molecular Sequence Data , Oligopeptides/chemistry , Peptides/metabolism , Peptides/pharmacology , Protein Conformation , Rats , Rats, Sprague-Dawley , Receptors, Opioid, delta/metabolism , Stereoisomerism , Structure-Activity Relationship
20.
Biochem Mol Biol Int ; 31(5): 797-805, 1993 Dec.
Article in English | MEDLINE | ID: mdl-8136697

ABSTRACT

An enzyme fraction with catalytic activities for the biosynthesis of the pipecolic acid containing cyclopeptolide SDZ 90-215 was partially purified and characterized from the genus Septoria. The crude cell homogenate was subjected to polyethyleneimine precipitation, ammonium sulfate precipitation and FPLC gel filtration. The denatured enzyme shows an apparent molecular mass of 1.2 MDa in 3% SDS-PAGE. Peptolide SDZ 90-215 synthetase catalyzes the ATP-PPi exchange reaction dependent on all substituent amino and hydroxy acids. SDZ 90-215 synthetase synthesizes the peptolide in vitro when incubated together with D-lactic acid, all constitutive amino acids in their N-unmethylated form, ATP, magnesium chloride and S-adenosyl-L-methionine. The yield of SDZ 90-215 is higher when O-methyl-L-tyrosine instead of L-tyrosine is used, indicating that O-methylation of tyrosine is not carried out by the synthetase.


Subject(s)
Mitosporic Fungi/enzymology , Multienzyme Complexes/metabolism , Peptide Synthases/metabolism , Peptides, Cyclic/biosynthesis , Amino Acid Sequence , Chromatography, High Pressure Liquid , Culture Media , Electrophoresis, Polyacrylamide Gel , Methyltyrosines/chemistry , Molecular Sequence Data , Molecular Weight , Multienzyme Complexes/chemistry , Multienzyme Complexes/isolation & purification , Peptide Synthases/chemistry , Peptide Synthases/isolation & purification , Peptides, Cyclic/chemistry , Peptides, Cyclic/isolation & purification , Pipecolic Acids/analysis , Tyrosine/metabolism
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