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1.
Nature ; 616(7955): 152-158, 2023 04.
Article in English | MEDLINE | ID: mdl-36991121

ABSTRACT

Non-enveloped viruses require cell lysis to release new virions from infected cells, suggesting that these viruses require mechanisms to induce cell death. Noroviruses are one such group of viruses, but there is no known mechanism that causes norovirus infection-triggered cell death and lysis1-3. Here we identify a molecular mechanism of norovirus-induced cell death. We found that the norovirus-encoded NTPase NS3 contains an N-terminal four-helix bundle domain homologous to the membrane-disruption domain of the pseudokinase mixed lineage kinase domain-like (MLKL). NS3 has a mitochondrial localization signal and thus induces cell death by targeting mitochondria. Full-length NS3 and an N-terminal fragment of the protein bound the mitochondrial membrane lipid cardiolipin, permeabilized the mitochondrial membrane and induced mitochondrial dysfunction. Both the N-terminal region and the mitochondrial localization motif of NS3 were essential for cell death, viral egress from cells and viral replication in mice. These findings suggest that noroviruses have acquired a host MLKL-like pore-forming domain to facilitate viral egress by inducing mitochondrial dysfunction.


Subject(s)
Cell Death , Norovirus , Nucleoside-Triphosphatase , Protein Kinases , Viral Proteins , Animals , Mice , Mitochondria/metabolism , Mitochondria/pathology , Norovirus/enzymology , Norovirus/growth & development , Norovirus/pathogenicity , Norovirus/physiology , Protein Kinases/chemistry , Virus Replication , Viral Proteins/chemistry , Viral Proteins/metabolism , Nucleoside-Triphosphatase/chemistry , Nucleoside-Triphosphatase/metabolism , Protein Sorting Signals , Cardiolipins/metabolism , Mitochondrial Membranes/chemistry , Mitochondrial Membranes/metabolism
2.
Gut Microbes ; 13(1): 1959839, 2021.
Article in English | MEDLINE | ID: mdl-34347572

ABSTRACT

Although cyclic GMP-AMP synthase (cGAS)-stimulator of interferon genes (STING) signaling has been well recognized in defending DNA viruses, the role of cGAS-STING signaling in regulating infection of RNA viruses remains largely elusive. Noroviruses, as single-stranded RNA viruses, are the main causative agents of acute viral gastroenteritis worldwide. This study comprehensively investigated the role of cGAS-STING in response to murine norovirus (MNV) infection. We found that STING agonists potently inhibited MNV replication in mouse macrophages partially requiring the JAK/STAT pathway that induced transcription of interferon (IFN)-stimulated genes (ISGs). Loss- and gain-function assays revealed that both cGAS and STING were necessary for host defense against MNV propagation. Knocking out cGAS or STING in mouse macrophages led to defects in induction of antiviral ISGs upon MNV infection. Overexpression of cGAS and STING moderately increased ISG transcription but potently inhibited MNV replication in human HEK293T cells ectopically expressing the viral receptor CD300lf. This inhibitory effect was not affected by JAK inhibitor treatment or expression of different MNV viral proteins. Interestingly, STING but not cGAS interacted with mouse RIG-I, and attenuated its N-terminus-mediated anti-MNV effects. Our results implicate an essential role for mouse cGAS and STING in regulating innate immune response and defending MNV infection. This further strengthens the evidence of cGAS-STING signaling in response to RNA virus infection.


Subject(s)
DEAD Box Protein 58/metabolism , Immunity, Innate/immunology , Membrane Proteins/metabolism , Norovirus/growth & development , Nucleotidyltransferases/metabolism , Animals , Caliciviridae Infections/pathology , Gastroenteritis/pathology , Gastroenteritis/virology , HEK293 Cells , Humans , Interferons/immunology , Janus Kinases/antagonists & inhibitors , Macrophages/virology , Membrane Proteins/agonists , Membrane Proteins/genetics , Mice , Norovirus/immunology , Nucleotidyltransferases/genetics , RAW 264.7 Cells , Signal Transduction , Virus Replication/physiology
3.
Viruses ; 13(3)2021 03 11.
Article in English | MEDLINE | ID: mdl-33799811

ABSTRACT

Human noroviruses (hNoVs) cause heavy disease burden worldwide and there is no clinically approved vaccination or antiviral hitherto. In this study, with the use of a zebrafish larva in vivo platform, we investigated the anti-hNoV potentials of fucoidan (from brown algae Fucus vesiculosus) and 2'-Fucosyllactose (2'-FL). As a result, although both fucoidan and 2'-FL were able to block hNoV GII.4 virus-like particle (VLPs) from binding to type A saliva as expected, only fucoidan, but not 2'-FL, was able to inhibit the replication of hNoV GII.P16-GII.4 in zebrafish larvae, indicating the possible needs of higher molecular weights for fucosylated carbohydrates to exert anti-hNoV effect.


Subject(s)
Antiviral Agents/pharmacology , Norovirus/growth & development , Polysaccharides/pharmacology , Trisaccharides/pharmacology , Zebrafish/virology , Animals , Humans , Larva/virology , Norovirus/drug effects , Saliva/virology , Virus Attachment/drug effects , Virus Replication/drug effects , Zebrafish/embryology
4.
Food Environ Virol ; 13(2): 229-240, 2021 06.
Article in English | MEDLINE | ID: mdl-33649884

ABSTRACT

Norovirus contamination of oysters is the lead cause of non-bacterial gastroenteritis and a significant food safety concern for the oyster industry. Here, norovirus reduction from Pacific oysters (Crassostrea gigas), contaminated in the marine environment, was studied in laboratory depuration trials and in two commercial settings. Norovirus concentrations were measured in oyster digestive tissue before, during and post-depuration using the ISO 15216-1 quantitative real-time RT-PCR method. Results of the laboratory-based studies demonstrate that statistically significant reductions of up to 74% of the initial norovirus GII concentration was achieved after 3 days at 17-21 °C and after 4 days at 11-15 °C, compared to 44% reduction at 7-9 °C. In many trials norovirus GII concentrations were reduced to levels below 100 genome copies per gram (gcg-1; limit of quantitation; LOQ). Virus reduction was also assessed in commercial depuration systems, routinely used by two Irish oyster producers. Up to 68% reduction was recorded for norovirus GI and up to 90% for norovirus GII reducing the geometric mean virus concentration close to or below the LOQ. In both commercial settings there was a significant difference between the levels of reduction of norovirus GI compared to GII (p < 0.05). Additionally, the ability to reduce the norovirus concentration in oysters to < LOQ differed when contaminated with concentrations below and above 1000 gcg-1. These results indicate that depuration, carried out at elevated (> 11 °C) water temperatures for at least 3 days, can reduce the concentration of norovirus in oysters and therefore consumer exposure providing a practical risk management tool for the shellfish industry.


Subject(s)
Crassostrea/virology , Food Handling/methods , Norovirus/growth & development , Shellfish/virology , Animals , Food Contamination/analysis , Food Handling/economics , Food Safety , Genome, Viral , Laboratories , Norovirus/genetics , Norovirus/isolation & purification , RNA, Viral/genetics , Real-Time Polymerase Chain Reaction , Shellfish/economics
5.
Food Environ Virol ; 13(2): 203-217, 2021 06.
Article in English | MEDLINE | ID: mdl-33548027

ABSTRACT

Oysters contaminated with human enteric viruses from sewage are implicated in foodborne outbreaks globally. Bacteriophages have been identified as potential indicators for these viruses, but have not been used in shellfish management outside of the USA. This study aimed to determine the background levels of F-RNA phage in five Australian oyster growing areas with a history of sewage spills and closures, over an 18-month period. In addition, oysters from five growing areas impacted by adverse sewage events were investigated for F-RNA phage, Escherichia coli, norovirus (NoV) and hepatitis A virus (HAV). F-RNA phage ≤ 60 pfu/100 gm shellfish flesh were found to represent a conservative background level in the surveyed areas. Following two of the five sewage spills, elevated phage levels were observed in most sample sites less than 4 days post spill. By 7 days, most sites from all events had phage < 30 pfu/100 gm. NoV was detected in day 1 and day 6 samples from one event when all phage were ≤ 30 pfu/100 gm. NoV was also detected in a day 3 sample from another event with < 30 phage pfu/100 gm, however, multiple replicate samples had elevated phage levels. The results of this study add evidence on the potential use of F-RNA phage as a tool in early re-opening of oyster harvest areas post sewage spills. However, it also highlights the need to better understand situations where phage testing may be ineffectual, and the importance of sampling at multiple sites and over multiple time points, to effectively capture evidence of contamination.


Subject(s)
Hepatitis A virus/isolation & purification , Norovirus/isolation & purification , Ostreidae/growth & development , Ostreidae/virology , RNA Phages/isolation & purification , Sewage/virology , Animals , Australia , Food Contamination/analysis , Hepatitis A virus/genetics , Hepatitis A virus/growth & development , Norovirus/genetics , Norovirus/growth & development , RNA Phages/genetics , RNA Phages/growth & development , Shellfish/virology
6.
mSphere ; 6(1)2021 01 27.
Article in English | MEDLINE | ID: mdl-33504663

ABSTRACT

Human noroviruses (HuNoVs) are the leading cause of epidemic and sporadic acute gastroenteritis worldwide. We previously demonstrated human intestinal stem cell-derived enteroids (HIEs) support cultivation of several HuNoV strains. However, HIEs did not support virus replication from every HuNoV-positive stool sample, which led us to test and optimize new medium conditions, identify characteristics of stool samples that allow replication, and evaluate consistency of replication over time. Optimization of our HIE-HuNoV culture system has shown the following: (i) a new HIE culture medium made with conditioned medium from a single cell line and commercial media promotes robust replication of HuNoV strains that replicated poorly in HIEs grown in our original culture medium made with conditioned media from 3 separate cell lines; (ii) GI.1, 11 GII genotypes (GII.1, GII.2, GII.3, GII.4, GII.6, GII.7, GII.8, GII.12, GII.13, GII.14, and GII.17), and six GII.4 variants can be cultivated in HIEs; (iii) successful replication is more likely with virus in stools with higher virus titers; (iv) GII.4_Sydney_2012 virus replication was reproducible over 3 years; and (v) HuNoV infection is restricted to the small intestine, based on replication of two viral strains in duodenal and ileal HIEs, but not colonoids, from two susceptible donors. These results improve the HIE culture system for HuNoV replication. Use of HIEs by several laboratories worldwide to study the molecular mechanisms that regulate HuNoV replication confirms the usefulness of this culture system, and our optimized methods for virus replication will advance the development of effective therapies and methods for virus control.IMPORTANCE Human noroviruses (HuNoVs) are highly contagious and cause acute and sporadic diarrheal illness in all age groups. In addition, chronic infections occur in immunocompromised cancer and transplant patients. These viruses are antigenically and genetically diverse, and there are strain-specific differences in binding to cellular attachment factors. In addition, new discoveries are being made on strain-specific differences in virus entry and replication and the epithelial cell response to infection in human intestinal enteroids. Human intestinal enteroids are a biologically relevant model to study HuNoVs; however, not all strains can be cultivated at this time. A complete understanding of HuNoV biology thus requires cultivation conditions that will allow the replication of multiple strains. We report optimization of HuNoV cultivation in human intestinal enteroid cultures to increase the numbers of cultivatable strains and the magnitude of replication, which is critical for testing antivirals, neutralizing antibodies, and methods of virus inactivation.


Subject(s)
Intestinal Mucosa/virology , Norovirus/growth & development , Organoids/virology , Child , Child, Preschool , Culture Media , Humans , Infant , Intestinal Mucosa/cytology , Stem Cells/cytology , Virus Replication/physiology
7.
Food Environ Virol ; 13(1): 107-116, 2021 03.
Article in English | MEDLINE | ID: mdl-33501613

ABSTRACT

Enteric viruses, such as human norovirus (NoV) and hepatitis A virus (HAV), are the major causes of foodborne illnesses worldwide. These viruses have low infectious dose, and may remain infectious for weeks in the environment and food. Limited information is available regarding viral survival and transmission in low-moisture foods (LMF). LMFs are generally considered as ready-to-eat products, which undergo no or minimal pathogen reduction steps. However, numerous foodborne viral outbreaks associated with LMFs have been reported in recent years. The objective of this study was to examine the survival of foodborne viruses in LMFs during 4-week storage at ambient temperature and to evaluate the efficacy of advanced oxidative process (AOP) treatment in the inactivation of these viruses. For this purpose, select LMFs such as pistachios, chocolate, and cereal were inoculated with HAV and the norovirus surrogates, murine norovirus (MNV) and feline calicivirus (FCV), then viral survival on these food matrices was measured over a four-week incubation at ambient temperature, by both plaque assay and droplet-digital RT-PCR (ddRT-PCR) using the modified ISO-15216 method as well as the magnetic bead assay for viral recovery. We observed an approximately 0.5 log reduction in viral genome copies, and 1 log reduction in viral infectivity for all three tested viruses following storage of select inoculated LMFs for 4 weeks. Therefore, the present study shows that the examined foodborne viruses can persist for a long time in LMFs. Next, we examined the inactivation efficacy of AOP treatment, which combines UV-C, ozone, and hydrogen peroxide vapor, and observed that while approximately 100% (4 log) inactivation can be achieved for FCV, and MNV in chocolate, the inactivation efficiency diminishes to approximately 90% (1 log) in pistachios and 70% (< 1 log) in cereal. AOP treatment could therefore be a good candidate for risk reduction of foodborne viruses from certain LMFs depending on the food matrix and surface of treatment.


Subject(s)
Chocolate/virology , Edible Grain/virology , Food Preservation/methods , Foodborne Diseases/virology , Hepatitis A virus/growth & development , Norovirus/growth & development , Pistacia/virology , Virus Inactivation/drug effects , Water/analysis , Animals , Calicivirus, Feline/drug effects , Calicivirus, Feline/genetics , Calicivirus, Feline/growth & development , Calicivirus, Feline/physiology , Chocolate/analysis , Edible Grain/chemistry , Food Contamination/analysis , Food Preservation/instrumentation , Food Preservatives/chemistry , Food Preservatives/pharmacology , Food Storage , Hepatitis A virus/drug effects , Hepatitis A virus/genetics , Hepatitis A virus/physiology , Hydrogen Peroxide/chemistry , Hydrogen Peroxide/pharmacology , Mice , Norovirus/drug effects , Norovirus/genetics , Norovirus/physiology , Oxidation-Reduction , Ozone/chemistry , Ozone/pharmacology , Pistacia/chemistry
8.
Lett Appl Microbiol ; 71(6): 605-610, 2020 Dec.
Article in English | MEDLINE | ID: mdl-32964478

ABSTRACT

Successful human norovirus (HuNoV) cultivation in stem cell-derived human intestinal enteroids (HIE) was recently reported. The purpose of this study was to evaluate the anti-HuNoV efficacy of two alcohol-based commercial hand sanitizers and 60% ethanol by suspension assay using RNase-RT-qPCR, with subsequent validation of efficacy by HuNoV cultivation using the HIE model. In suspension, when evaluated by RNase-RT-qPCR, 60% ethanol resulted in less than one log10 reduction in HuNoV genome equivalent copies (GEC) regardless of contact time (30 or 60s) or soil load. The two commercial products outperformed 60% ethanol regardless of contact time or soil load, providing 2·2-3·2 log10 HuNoV GEC reductions by suspension assay. Product B could not be validated in the HIE model due to cytotoxicity. Following a 60s exposure, viral replication in the HIE model increased 1·9 ± 0·2 log10 HuNoV GEC for the neutralization (positive) control and increased 0·9 ± 0·2 log10 HuNoV GEC in challenged HIE after treatment with 60% ethanol. No HuNoV replication in HIE was observed after a 60 s exposure to Product A.


Subject(s)
Caliciviridae Infections/virology , Ethanol/pharmacology , Hand Sanitizers/pharmacology , Intestines/virology , Norovirus/drug effects , Drug Evaluation, Preclinical , Humans , Norovirus/genetics , Norovirus/growth & development , Norovirus/physiology , Real-Time Polymerase Chain Reaction/instrumentation , Ribonucleases/metabolism , Virus Replication/drug effects
9.
Front Immunol ; 11: 961, 2020.
Article in English | MEDLINE | ID: mdl-32612600

ABSTRACT

Human noroviruses (HuNoVs) are the cause of more than 95% of epidemic non-bacterial gastroenteritis worldwide, with some lethal cases. These viral agents affect people of all ages. However, young children and older adults are the highest-risk groups, being affected with the greatest rate of hospitalizations and morbidity cases. HuNoV structural proteins, especially VP1, have been studied extensively. In contrast, the functions of the non-structural proteins of the virus have been undescribed in depth. Studies on HuNoV non-structural proteins have mostly been made by expressing them individually in in vitro cultures, providing insights of their functions and the role that they play in HuNoV replication and pathogenesis. This review examines exhaustively the functions of both HuNoV structural and non-structural proteins and their possible role within the viral replicative cycle and the pathogenesis of the virus. It also highlights recent findings regarding the host's innate and adaptive immune responses against HuNoV, which are of great relevance for diagnostics and vaccine development so as to prevent infections caused by these fastidious viruses.


Subject(s)
Adaptive Immunity , Caliciviridae Infections/virology , Immunity, Innate , Norovirus/pathogenicity , Viral Proteins/metabolism , Virus Replication , Animals , Caliciviridae Infections/immunology , Caliciviridae Infections/metabolism , Host-Pathogen Interactions , Humans , Norovirus/growth & development , Norovirus/immunology , Norovirus/metabolism , Protein Conformation , Structure-Activity Relationship , Viral Proteins/chemistry , Viral Proteins/immunology , Virulence
10.
PLoS Pathog ; 16(4): e1008242, 2020 04.
Article in English | MEDLINE | ID: mdl-32251490

ABSTRACT

Murine norovirus (MNoV) is an important model of human norovirus (HNoV) and mucosal virus infection more broadly. Viral receptor utilization is a major determinant of cell tropism, host range, and pathogenesis. The bona fide receptor for HNoV is unknown. Recently, we identified CD300lf as a proteinaceous receptor for MNoV. Interestingly, its paralogue CD300ld was also sufficient for MNoV infection in vitro. Here we explored whether CD300lf is the sole physiologic receptor in vivo and whether HNoV can use a CD300 ortholog as an entry receptor. We report that both CD300ld and CD300lf are sufficient for infection by diverse MNoV strains in vitro. We further demonstrate that CD300lf is essential for both oral and parenteral MNoV infection and to elicit anti-MNoV humoral responses in vivo. In mice deficient in STAT1 signaling, CD300lf is required for MNoV-induced lethality. Finally, we demonstrate that human CD300lf (huCD300lf) is not essential for HNoV infection, nor does huCD300lf inhibit binding of HNoV virus-like particles to glycans. Thus, we report huCD300lf is not a receptor for HNoV.


Subject(s)
Caliciviridae Infections/virology , Host Specificity , Host-Pathogen Interactions , Norovirus/metabolism , Receptors, Immunologic/metabolism , Receptors, Virus/metabolism , Animals , HeLa Cells , Humans , Mice , Mice, Inbred C57BL , Mice, Knockout , Norovirus/growth & development , Receptors, Immunologic/physiology , Viral Tropism
11.
Food Environ Virol ; 12(2): 130-136, 2020 06.
Article in English | MEDLINE | ID: mdl-32152895

ABSTRACT

The availability of drinking water is one of the main determinants of quality of life, disease prevention and the promotion of health. Viruses are important agents of waterborne diseases and have been described as important markers of human faecal contamination. This study aimed to investigate viruses' presence as an indicator of drinking water quality in low-income communities in the Manguinhos area, Rio de Janeiro, Brazil. Three hundred and four drinking water samples (2L/each) were collected along the drinking water distribution-to-consumption pathway in households, as well as healthcare and school units. Water samples were collected both directly from the water supply prior to distribution and after storage in tanks and filtration units. Using qPCR, viruses were detected 50 times in 45 water samples (15%), 19 of these being human adenovirus, 17 rotavirus A and 14 norovirus GII. Viral loads recovered ranged from 5E+10 to 8.7E+106 genome copies/Liter. Co-detection was observed in five household water samples and there was no difference regarding virus detection across sampling sites. Precarious and inadequate environmental conditions characterized by the lack of local infrastructure regarding basic sanitation and waste collection in the territory, as well as negligent hygiene habits, could explain viral detection in drinking water in regions with a water supply system.


Subject(s)
Adenoviruses, Human/isolation & purification , Drinking Water/virology , Gastroenteritis/virology , Norovirus/isolation & purification , Rotavirus/isolation & purification , Adenoviruses, Human/classification , Adenoviruses, Human/genetics , Adenoviruses, Human/growth & development , Brazil/epidemiology , Drinking Water/analysis , Gastroenteritis/economics , Gastroenteritis/epidemiology , Humans , Hygiene , Norovirus/classification , Norovirus/genetics , Norovirus/growth & development , Poverty , Quality of Life , Residence Characteristics/statistics & numerical data , Rotavirus/classification , Rotavirus/genetics , Rotavirus/growth & development , Water Quality , Water Supply/economics
12.
Food Environ Virol ; 12(2): 180-190, 2020 06.
Article in English | MEDLINE | ID: mdl-32124244

ABSTRACT

Human noroviruses are the major cause of non-bacterial acute gastroenteritis worldwide. Since no therapeutic agent has been proven to prevent human norovirus infection yet, preventive healthcare interventions to block the infection routes play an important role in infection control. One of the possible infection routes of human noroviruses are through contaminated hands, but no hand antiseptics have been proven effective. Olanexidine gluconate is a new biguanide compound that has already been approved for sale as an antiseptic for the surgical field in Japan. A new hand antiseptic was developed using olanexidine gluconate in this study, and its virucidal efficacy against human noroviruses was evaluated using modified RT-qPCR that can account for genome derived from intact viruses using RNase A and photo-reactive intercalators. We tested the virucidal efficacy of five materials; two olanexidine gluconate antiseptics (hand rub formulation and surgical field formulation), two kinds of ethanol solutions at different pH (approx. 3 or 7), and a base component of olanexidine gluconate hand rub formulation against 11 human norovirus genotypes by culture-independent methods. The infectivity of murine norovirus (MNV), a surrogate for human norovirus, was significantly reduced after use of the antiseptics. The olanexidine gluconate hand rub demonstrated the strongest virucidal efficacy against human norovirus among the five tested materials. This study showed that olanexidine gluconate has the potential to become a strong tool for the prevention of human norovirus infection.


Subject(s)
Antiviral Agents/pharmacology , Biguanides/pharmacology , Glucuronates/pharmacology , Hand Sanitizers/pharmacology , Norovirus/drug effects , Animals , Caliciviridae Infections/prevention & control , Caliciviridae Infections/virology , Gastroenteritis/prevention & control , Gastroenteritis/virology , Humans , Japan , Mice , Norovirus/classification , Norovirus/genetics , Norovirus/growth & development
13.
Nat Microbiol ; 5(1): 84-92, 2020 01.
Article in English | MEDLINE | ID: mdl-31768030

ABSTRACT

Evidence has accumulated to demonstrate that the intestinal microbiota enhances mammalian enteric virus infections1. For example, we and others previously reported that commensal bacteria stimulate acute and persistent murine norovirus infections2-4. However, in apparent contradiction of these results, the virulence of murine norovirus infection was unaffected by antibiotic treatment. This prompted us to perform a detailed investigation of murine norovirus infection in microbially deplete mice, revealing a more complex picture in which commensal bacteria inhibit viral infection of the proximal small intestine while simultaneously stimulating the infection of distal regions of the gut. Thus, commensal bacteria can regulate viral regionalization along the intestinal tract. We further show that the mechanism underlying bacteria-dependent inhibition of norovirus infection in the proximal gut involves bile acid priming of type III interferon. Finally, the regional effects of the microbiota on norovirus infection may result from distinct regional expression profiles of key bile acid receptors that regulate the type III interferon response. Overall, these findings reveal that the biotransformation of host metabolites by the intestinal microbiota directly and regionally impacts infection by a pathogenic enteric virus.


Subject(s)
Bile Acids and Salts/metabolism , Caliciviridae Infections/immunology , Gastrointestinal Microbiome , Interferons/metabolism , Intestines/immunology , Animals , Caliciviridae Infections/microbiology , Cell Line , Host-Pathogen Interactions , Humans , Intestines/microbiology , Intestines/virology , Mice , Mice, Inbred C57BL , Mice, Knockout , Norovirus/growth & development , Norovirus/pathogenicity , Organ Specificity , Interferon Lambda
14.
Food Environ Virol ; 12(1): 58-67, 2020 03.
Article in English | MEDLINE | ID: mdl-31721078

ABSTRACT

We modeled Group A Rotavirus (RVA) and Norovirus genogroup II (GII NoV) transport experiments in standardized (crystal quartz sand and deionized water with adjusted pH and ionic strength) and natural soil matrix-water systems (MWS). On the one hand, in the standardized MWS, Rotavirus and Norovirus showed very similar breakthrough curves (BTCs), showing a removal rate of 2 and 1.7 log10, respectively. From the numerical modeling of the experiment, transport parameters of the same order of magnitude were obtained for both viruses. On the other hand, in the natural MWS, the two viruses show very different BTCs. The Norovirus transport model showed significant changes; BTC showed a removal rate of 4 log10, while Rotavirus showed a removal rate of 2.6 log10 similar to the 2 log10 observed on the standardized MWS. One possible explanation for this differential behavior is the difference in the isoelectric point value of these two viruses and the increase of the ionic strength on the natural MWS.


Subject(s)
Fresh Water/virology , Norovirus/chemistry , Rotavirus/chemistry , Fresh Water/chemistry , Humans , Hydrogen-Ion Concentration , Kinetics , Models, Biological , Norovirus/growth & development , Osmolar Concentration , Rotavirus/growth & development , Soil/chemistry , Soil Microbiology
15.
Sci Rep ; 9(1): 18413, 2019 12 05.
Article in English | MEDLINE | ID: mdl-31804593

ABSTRACT

Human norovirus is the leading cause of acute gastroenteritis worldwide, affecting every year 685 million people. In about one third of cases, this virus affects children under five years of age, causing each year up to 200,000 child deaths, mainly in the developing countries. Norovirus outbreaks are associated with very significant economic losses, with an estimated societal cost of 60 billion dollars per year. Despite the marked socio-economic consequences associated, no therapeutic options or vaccines are currently available to treat or prevent this infection. One promising target to identify new antiviral agents for norovirus is the viral polymerase, which has a pivotal role for the viral replication and lacks closely homologous structures in the host. Starting from the scaffold of a novel class of norovirus polymerase inhibitors recently discovered in our research group with a computer-aided method, different new chemical modifications were designed and carried out, with the aim to identify improved agents effective against norovirus replication in cell-based assays. While different new inhibitors of the viral polymerase were found, a further computer-aided ligand optimisation approach led to the identification of a new antiviral scaffold for norovirus, which inhibits human norovirus replication at low-micromolar concentrations.


Subject(s)
Antiviral Agents/chemical synthesis , Norovirus/drug effects , Oxazoles/chemical synthesis , Pyrimidines/chemical synthesis , RNA-Dependent RNA Polymerase/antagonists & inhibitors , Sulfonamides/chemical synthesis , Thiophenes/chemical synthesis , Viral Proteins/antagonists & inhibitors , Animals , Antiviral Agents/pharmacology , Binding Sites , Drug Design , Enzyme Inhibitors/chemical synthesis , Enzyme Inhibitors/pharmacology , Gene Expression , Humans , Mice , Molecular Docking Simulation , Norovirus/enzymology , Norovirus/genetics , Norovirus/growth & development , Oxazoles/pharmacology , Protein Binding , Protein Interaction Domains and Motifs , Protein Structure, Secondary , Pyrimidines/pharmacology , RAW 264.7 Cells , RNA-Dependent RNA Polymerase/chemistry , RNA-Dependent RNA Polymerase/metabolism , Structure-Activity Relationship , Substrate Specificity , Sulfonamides/pharmacology , Thiophenes/pharmacology , Viral Proteins/chemistry , Viral Proteins/metabolism , Virus Replication/drug effects
16.
J Gen Virol ; 100(11): 1530-1540, 2019 11.
Article in English | MEDLINE | ID: mdl-31596195

ABSTRACT

The role of commensal microbiota in enteric viral infections has been explored extensively, but the interaction between human gut microbiota (HGM) and human norovirus (HuNoV) is poorly understood. In this study, we established an HGM-Transplanted gnotobiotic (Gn) pig model of HuNoV infection and disease, using an infant stool as HGM transplant and a HuNoV GII.4/2006b strain for virus inoculation. Compared to germ-free Gn pigs, HuNoV inoculation in HGMT Gn pigs resulted in increased HuNoV shedding, characterized by significantly higher shedding titres on post inoculation day (PID) 3, 4, 6, 8 and 9, and significantly longer mean duration of virus shedding. In addition, virus titres were significantly higher in duodenum and distal ileum of HGMT Gn pigs on PID10, while comparable and transient HuNoV viremia was detected in both groups. 16S rRNA gene sequencing demonstrated that HuNoV infection dramatically altered intestinal microbiota in HGMT Gn pigs at the phylum (Proteobacteria, Firmicutes and Bacteroidetes) and genus (Enterococcus, Bifidobacterium, Clostridium, Ruminococcus, Anaerococcus, Bacteroides and Lactobacillus) levels. In summary, enhanced GII.4 HuNoV infection was observed in the presence of HGM, and host microbiota was susceptible to disruption upon HuNoV infection.


Subject(s)
Caliciviridae Infections/pathology , Dysbiosis , Gastrointestinal Microbiome , Microbial Interactions , Microbiota , Norovirus/growth & development , Animals , Blood/virology , Caliciviridae Infections/complications , Cluster Analysis , DNA, Bacterial/chemistry , DNA, Bacterial/genetics , DNA, Ribosomal/chemistry , DNA, Ribosomal/genetics , Disease Models, Animal , Duodenum/virology , Fecal Microbiota Transplantation , Genotype , Germ-Free Life , Humans , Ileum/virology , Norovirus/classification , Norovirus/genetics , Phylogeny , RNA, Ribosomal, 16S/genetics , Sequence Analysis, DNA , Swine , Time Factors , Viral Load , Virus Shedding
17.
Ned Tijdschr Geneeskd ; 1632019 09 09.
Article in Dutch | MEDLINE | ID: mdl-31556502

ABSTRACT

OBJECTIVE To determine the size and causative pathogen of the outbreak and to identify risk factors for developing gastroenteritis among participants of the Survivalrun in Udenhout in September 2016. Design Retrospective cohort study. METHODS We sent an invitation to go to an online questionnaire to participants and volunteers of the Survivalrun by email. The link to the questionnaire was also shared on the Facebook page and website of the Survivalrun. We calculated attack rates (AR) and relative risks (RR) for several exposures to identify risk factors for developing diarrhoea and/or vomiting within 3 days after the run. In addition, stool samples of six participants were tested for common gastrointestinal pathogens. RESULTS A total of 444 people completed the questionnaire. Symptoms of gastroenteritis were reported by 163 study participants (37%). Five participants reported symptoms of gastroenteritis in the week before and three participants during the Survivalrun. Multivariate analysis identified the following risk factors for developing gastroenteritis: participation on the second day of the run(RR 2.4: 95% CI 1.1-5.3), ingesting water (RR 1.7: 95% CI 1.3-2.3) and ingesting mud (RR 1.3: 95% CI 1.1-1.6). Four out of six stool samples tested positive for norovirus (various types). CONCLUSION This outbreak investigation shows that pathogens, such as norovirus, can easily spread during sporting events where participants have to move through water and mud. Specific methods and knowledge of the circumstances are essential for a thorough outbreak investigation.


Subject(s)
Disease Outbreaks/statistics & numerical data , Gastroenteritis/epidemiology , Population Surveillance/methods , Sports , Water/adverse effects , Adult , Diarrhea/epidemiology , Diarrhea/microbiology , Feces/microbiology , Female , Gastroenteritis/etiology , Humans , Incidence , Male , Norovirus/growth & development , Retrospective Studies , Risk Factors , Vomiting/epidemiology , Vomiting/microbiology , Water Microbiology
18.
Elife ; 82019 08 12.
Article in English | MEDLINE | ID: mdl-31403400

ABSTRACT

Knowledge of the host factors required for norovirus replication has been hindered by the challenges associated with culturing human noroviruses. We have combined proteomic analysis of the viral translation and replication complexes with a CRISPR screen, to identify host factors required for norovirus infection. The core stress granule component G3BP1 was identified as a host factor essential for efficient human and murine norovirus infection, demonstrating a conserved function across the Norovirus genus. Furthermore, we show that G3BP1 functions in the novel paradigm of viral VPg-dependent translation initiation, contributing to the assembly of translation complexes on the VPg-linked viral positive sense RNA genome by facilitating ribosome recruitment. Our data uncovers a novel function for G3BP1 in the life cycle of positive sense RNA viruses and identifies the first host factor with pan-norovirus pro-viral activity.


Subject(s)
DNA Helicases/metabolism , Host-Pathogen Interactions , Norovirus/growth & development , Poly-ADP-Ribose Binding Proteins/metabolism , Protein Biosynthesis , RNA Helicases/metabolism , RNA Recognition Motif Proteins/metabolism , Viral Proteins/biosynthesis , Animals , Caliciviridae Infections , Cell Line , Humans , Mice
19.
Viruses ; 11(7)2019 07 11.
Article in English | MEDLINE | ID: mdl-31336765

ABSTRACT

Noroviruses, in the genus Norovirus, are a significant cause of viral gastroenteritis in humans and animals. For almost 50 years, the lack of a cultivation system for human noroviruses (HuNoVs) was a major barrier to understanding virus biology and the development of effective antiviral strategies. This review presents a historical perspective of the development of a cultivation system for HuNoVs in human intestinal epithelial cell cultures. Successful cultivation was based on the discovery of genetically-encoded host factors required for infection, knowledge of the site of infection in humans, and advances in the cultivation of human intestinal epithelial cells achieved by developmental and stem cell biologists. The human stem cell-derived enteroid cultivation system recapitulates the multicellular, physiologically active human intestinal epithelium, and allows studies of virus-specific replication requirements, evaluation of human host-pathogen interactions, and supports the pre-clinical assessment of methods to prevent and treat HuNoV infections.


Subject(s)
Epithelial Cells/virology , Intestinal Mucosa/virology , Norovirus/growth & development , Stem Cells/virology , Virus Cultivation/methods , Caliciviridae Infections/drug therapy , Caliciviridae Infections/prevention & control , Host-Pathogen Interactions , Humans , Norovirus/physiology , Stem Cells/physiology , Virus Replication
20.
Viruses ; 11(6)2019 06 12.
Article in English | MEDLINE | ID: mdl-31212759

ABSTRACT

Human norovirus (HuNoV) infection is a major cause of gastroenteritis all over the world. Despite this, these non-enveloped RNA viruses are poorly characterized due to the lack of robust and widely available HuNoV culture systems. The two published systems (B cell line and stem cell-derived enteroids) support replication of HuNoVs but the levels of replication are not sufficient for the generation of highly purified virus stocks or the development of culture-based quantification assays. Therefore, improvement of HuNoV in vitro replication is still needed. Murine norovirus and other caliciviruses have provided insights into norovirus replication that paved the way for the development of the current HuNoV culture systems and may also aid in the improvement of these systems. This review will highlight ways in which previous research guided and impacted the development of HuNoV culture systems and discuss ways in which more recent discoveries might be utilized to improve the quality of the HuNoV in vitro replication.


Subject(s)
Norovirus/growth & development , Virus Cultivation/methods , Virus Replication , Cell Line , Humans
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