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1.
Pathog Dis ; 812023 01 17.
Artículo en Inglés | MEDLINE | ID: mdl-37385817

RESUMEN

Borrelia burgdorferi, the spirochete that causes Lyme disease, is a diderm organism that is similar to Gram-negative organisms in that it contains both an inner and outer membrane. Unlike typical Gram-negative organisms, however, B. burgdorferi lacks lipopolysaccharide (LPS). Using computational genome analyses and structural modeling, we identified a transport system containing six proteins in B. burgdorferi that are all orthologs to proteins found in the lipopolysaccharide transport (LPT) system that links the inner and outer membranes of Gram-negative organisms and is responsible for placing LPS on the surface of these organisms. While B. burgdorferi does not contain LPS, it does encode over 100 different surface-exposed lipoproteins and several major glycolipids, which like LPS are also highly amphiphilic molecules, though no system to transport these molecules to the borrelial surface is known. Accordingly, experiments supplemented by molecular modeling were undertaken to determine whether the orthologous LPT system identified in B. burgdorferi could transport lipoproteins and/or glycolipids to the borrelial outer membrane. Our combined observations strongly suggest that the LPT transport system does not transport lipoproteins to the surface. Molecular dynamic modeling, however, suggests that the borrelial LPT system could transport borrelial glycolipids to the outer membrane.


Asunto(s)
Grupo Borrelia Burgdorferi , Borrelia burgdorferi , Enfermedad de Lyme , Humanos , Borrelia burgdorferi/genética , Borrelia burgdorferi/química , Lipopolisacáridos/metabolismo , Proteínas de la Membrana Bacteriana Externa/genética , Proteínas de la Membrana Bacteriana Externa/metabolismo , Lipoproteínas/genética , Lipoproteínas/química , Lipoproteínas/metabolismo , Proteínas Portadoras/metabolismo , Glucolípidos/metabolismo , Grupo Borrelia Burgdorferi/metabolismo
2.
J Virol ; 96(17): e0096722, 2022 09 14.
Artículo en Inglés | MEDLINE | ID: mdl-35943255

RESUMEN

Host factors play critical roles in SARS-CoV-2 infection-associated pathology and the severity of COVID-19. In this study, we systematically analyzed the roles of SARS-CoV-2-induced host factors, doublecortin-like kinase 1 (DCLK1), and S100A9 in viral pathogenesis. In autopsied subjects with COVID-19 and pre-existing chronic liver disease, we observed high levels of DCLK1 and S100A9 expression and immunosuppressive (DCLK1+S100A9+CD206+) M2-like macrophages and N2-like neutrophils in lungs and livers. DCLK1 and S100A9 expression were rarely observed in normal controls, COVID-19-negative subjects with chronic lung disease, or COVID-19 subjects without chronic liver disease. In hospitalized patients with COVID-19, we detected 2 to 3-fold increased levels of circulating DCLK1+S100A9+ mononuclear cells that correlated with disease severity. We validated the SARS-CoV-2-dependent generation of these double-positive immune cells in coculture. SARS-CoV-2-induced DCLK1 expression correlated with the activation of ß-catenin, a known regulator of the DCLK1 promoter. Gain and loss of function studies showed that DCLK1 kinase amplified live virus production and promoted cytokine, chemokine, and growth factor secretion by peripheral blood mononuclear cells. Inhibition of DCLK1 kinase blocked pro-inflammatory caspase-1/interleukin-1ß signaling in infected cells. Treatment of SARS-CoV-2-infected cells with inhibitors of DCLK1 kinase and S100A9 normalized cytokine/chemokine profiles and attenuated DCLK1 expression and ß-catenin activation. In conclusion, we report previously unidentified roles of DCLK1 in augmenting SARS-CoV-2 viremia, inflammatory cytokine expression, and dysregulation of immune cells involved in innate immunity. DCLK1 could be a potential therapeutic target for COVID-19, especially in patients with underlying comorbid diseases associated with DCLK1 expression. IMPORTANCE High mortality in COVID-19 is associated with underlying comorbidities such as chronic liver diseases. Successful treatment of severe/critical COVID-19 remains challenging. Herein, we report a targetable host factor, DCLK1, that amplifies SARS-CoV-2 production, cytokine secretion, and inflammatory pathways via activation of ß-catenin(p65)/DCLK1/S100A9/NF-κB signaling. Furthermore, we observed in the lung, liver, and blood an increased prevalence of immune cells coexpressing DCLK1 and S100A9, a myeloid-derived proinflammatory protein. These cells were associated with increased disease severity in COVID-19 patients. Finally, we used a novel small-molecule inhibitor of DCLK1 kinase (DCLK1-IN-1) and S100A9 inhibitor (tasquinimod) to decrease virus production in vitro and normalize hyperinflammatory responses known to contribute to disease severity in COVID-19.


Asunto(s)
COVID-19 , Quinasas Similares a Doblecortina , COVID-19/metabolismo , COVID-19/patología , Calgranulina B/metabolismo , Quimiocinas/metabolismo , Citocinas/metabolismo , Quinasas Similares a Doblecortina/antagonistas & inhibidores , Quinasas Similares a Doblecortina/metabolismo , Humanos , Péptidos y Proteínas de Señalización Intracelular/genética , Leucocitos Mononucleares/metabolismo , Quinolonas/farmacología , SARS-CoV-2 , beta Catenina/metabolismo
3.
Adv Physiol Educ ; 46(3): 443-452, 2022 Sep 01.
Artículo en Inglés | MEDLINE | ID: mdl-35658613

RESUMEN

The Oklahoma IDeA Network of Biomedical Research Excellence (OK-INBRE) provides a formalized mentoring program and grant awards to new and early-stage faculty throughout Oklahoma. The OK-INBRE Research Project Investigator (RPI) award program has supported 30 faculty from both research-intensive universities and primarily undergraduate institutions (PUIs) over the past 15 yr. To examine the impact of this program, we assessed the career trajectory of OK-INBRE RPI awardees and compared their productivity with a control group of applicants who applied for but did not receive an RPI award. A mixed-methods approach was employed to assess longitudinal programmatic impact. Regression analyses were conducted to estimate the effect of an RPI award on faculty productivity, controlling for institutional affiliation. Key informant interviews were conducted to capture qualitative information about satisfaction and additional outcomes. OK-INBRE RPI awardees had a higher number in total and mean number of publications. In achieving extramural funding, RPI awardees were 12.5 times (P = 0.005) as likely to receive a grant award of any type and 4.5 times (P = 0.06) as likely to receive a subsequent federal grant as those in the control group. Many RPI awardees attributed their career success to OK-INBRE, but they also helped to identify barriers to advancement or productivity associated with their specific home institutions. The combined data indicate that OK-INBRE plays a significant role in launching new and early-stage investigators on a path toward independent research careers, which will in turn have a positive impact on the future of the biomedical research enterprise in Oklahoma.NEW & NOTEWORTHY The Oklahoma IDeA Network of Biomedical Research Excellence (OK-INBRE) has been offering a formalized mentoring program and grant awards to new and early-stage faculty throughout Oklahoma for the past 15 yr. The program has been shown to play a significant role in launching participants on a path toward productive research careers, which will in turn be impactful on the biomedical research enterprise in Oklahoma.


Asunto(s)
Investigación Biomédica , Tutoría , Docentes , Humanos , Mentores , Oklahoma
4.
PLoS Pathog ; 17(8): e1009869, 2021 08.
Artículo en Inglés | MEDLINE | ID: mdl-34415955

RESUMEN

The Lyme disease spirochete Borrelia burgdorferi relies on uptake of essential nutrients from its host environments for survival and infection. Therefore, nutrient acquisition mechanisms constitute key virulence properties of the pathogen, yet these mechanisms remain largely unknown. In vivo expression technology applied to B. burgdorferi (BbIVET) during mammalian infection identified gene bb0562, which encodes a hypothetical protein comprised of a conserved domain of unknown function, DUF3996. DUF3996 is also found across adjacent encoded hypothetical proteins BB0563 and BB0564, suggesting the possibility that the three proteins could be functionally related. Deletion of bb0562, bb0563 and bb0564 individually and together demonstrated that bb0562 alone was important for optimal disseminated infection in immunocompetent and immunocompromised mice by needle inoculation and tick bite transmission. Moreover, bb0562 promoted spirochete survival during the blood dissemination phase of infection. Gene bb0562 was also found to be important for spirochete growth in low serum media and the growth defect of Δbb0562 B. burgdorferi was rescued with the addition of various long chain fatty acids, particularly oleic acid. In mammals, fatty acids are primarily stored in fat droplets in the form of triglycerides. Strikingly, addition of glyceryl trioleate, the triglyceride form of oleic acid, to the low serum media did not rescue the growth defect of the mutant, suggesting bb0562 may be important for the release of fatty acids from triglycerides. Therefore, we searched for and identified two canonical GXSXG lipase motifs within BB0562, despite the lack of homology to known bacterial lipases. Purified BB0562 demonstrated lipolytic activity dependent on the catalytic serine residues within the two motifs. In sum, we have established that bb0562 is a novel nutritional virulence determinant, encoding a lipase that contributes to fatty acid scavenge for spirochete survival in environments deficient in free fatty acids including the mammalian host.


Asunto(s)
Proteínas Bacterianas/metabolismo , Ácidos Grasos/deficiencia , Regulación Bacteriana de la Expresión Génica , Interacciones Huésped-Patógeno , Lipasa/metabolismo , Enfermedad de Lyme/microbiología , Factores de Virulencia/metabolismo , Animales , Proteínas Bacterianas/genética , Borrelia burgdorferi/fisiología , Femenino , Ixodes/microbiología , Enfermedad de Lyme/inmunología , Enfermedad de Lyme/metabolismo , Masculino , Ratones , Ratones Endogámicos C3H , Ratones Endogámicos NOD , Factores de Virulencia/genética
5.
J Infect Dis ; 221(9): 1438-1447, 2020 04 07.
Artículo en Inglés | MEDLINE | ID: mdl-31758693

RESUMEN

Borrelia burgdorferi conserved gene products BB0406 and BB0405, members of a common B. burgdorferi paralogous gene family, share 59% similarity. Although both gene products can function as potential porins, only BB0405 is essential for infection. Here we show that, despite sequence homology and coexpression from the same operon, both proteins differ in their membrane localization attributes, antibody accessibility, and immunogenicity in mice. BB0406 is required for spirochete survival in mammalian hosts, particularly for the disseminated infection in distant organs. We identified that BB0406 interacts with laminin, one of the major constituents of the vascular basement membrane, and facilitates spirochete transmigration across host endothelial cell barriers. A better understanding of how B. burgdorferi transmigrates through dermal and tissue vascular barriers and establishes disseminated infections will contribute to the development of novel therapeutics to combat early infection.


Asunto(s)
Proteínas de la Membrana Bacteriana Externa/inmunología , Células Endoteliales/microbiología , Interacciones Huésped-Patógeno , Laminina/metabolismo , Enfermedad de Lyme/microbiología , Animales , Anticuerpos Antibacterianos/inmunología , Antígenos Bacterianos/inmunología , Proteínas de la Membrana Bacteriana Externa/genética , Borrelia burgdorferi/efectos de los fármacos , Borrelia burgdorferi/genética , Modelos Animales de Enfermedad , Células Endoteliales/metabolismo , Expresión Génica , Marcación de Gen , Prueba de Complementación Genética , Humanos , Ratones , Ratones Endogámicos C3H , Mutación , Unión Proteica
6.
Artículo en Inglés | MEDLINE | ID: mdl-31768211

RESUMEN

Participating in research under the guidance of faculty mentors can increase undergraduate students' skills, knowledge, and confidence in conducting scientific research and pursing a scientific career. The Oklahoma IDeA Network of Biomedical Research Excellence (OK-INBRE) in the US state of Oklahoma has established an infrastructure to develop future researchers and healthcare professionals by providing students with summer internships. However, long-term benefits have not typically been well quantified, and most prior investigations examining benefits and outcomes of undergraduate summer research experiences have been descriptive and/or observational in nature. To assess OK-INBRE summer program participants, educational and career outcomes were systematically tracked. Data for evaluation included 1) primary sources containing responses to learning surveys from OK-INBRE and national cohorts over a three-year period, and 2) secondary sources from the Oklahoma State Regents for Higher Education (OSRHE), that track educational outcomes of Oklahoma students over a 15-year period. Frequency statistics were compiled and bivariate analyses were conducted to examine participant academic and career outcomes. Survey responses reported higher satisfaction in various dimensions of learning among OK-INBRE students than among corresponding national cohorts, particularly on dimensions of knowledge, skills, and understanding of sciences. The OSRHE data showed that, compared with those in the control group, there was a 100% increase in OK-INBRE participants who enrolled in or had completed a professional degree (e.g., MD/DO) and a 175% increase in students attending a biomedical science graduate program. These findings demonstrate the contribution of the OK-INBRE program in promoting science education and professions.

7.
Methods Mol Biol ; 1690: 47-55, 2018.
Artículo en Inglés | MEDLINE | ID: mdl-29032535

RESUMEN

Co-immunoprecipitation can be utilized to study protein-protein interactions from various environments, cell types, or tissues. Herein, we describe a co-immunoprecipitation protocol that can be used to examine protein complexes found in the pathogenic spirochete Borrelia burgdorferi. The method outlined here has successfully identified known and unknown members of borrelial protein complexes and is an efficient method for studying protein interactions in this pathogenic spirochete.


Asunto(s)
Proteínas Bacterianas/metabolismo , Borrelia burgdorferi/fisiología , Inmunoprecipitación/métodos , Mapeo de Interacción de Proteínas/métodos , Mapas de Interacción de Proteínas , Animales , Técnicas de Cultivo de Célula/métodos , Humanos , Enfermedad de Lyme/metabolismo
8.
PLoS One ; 12(12): e0189032, 2017.
Artículo en Inglés | MEDLINE | ID: mdl-29236742

RESUMEN

Escherichia coli is the leading cause of Gram-negative neonatal septicemia in the United States. Invasion and passage across the neonatal gut after ingestion of maternal E. coli strains produce bacteremia. In this study, we compared the virulence properties of the neonatal E. coli bacteremia clinical isolate SCB34 with the archetypal neonatal E. coli meningitis strain RS218. Whole-genome sequencing data was used to compare the protein coding sequences among these clinical isolates and 33 other representative E. coli strains. Oral inoculation of newborn animals with either strain produced septicemia, whereas intraperitoneal injection caused septicemia only in pups infected with RS218 but not in those injected with SCB34. In addition to being virulent only through the oral route, SCB34 demonstrated significantly greater invasion and transcytosis of polarized intestinal epithelial cells in vitro as compared to RS218. Protein coding sequences comparisons highlighted the presence of known virulence factors that are shared among several of these isolates, and revealed the existence of proteins exclusively encoded in SCB34, many of which remain uncharacterized. Our study demonstrates that oral acquisition is crucial for the virulence properties of the neonatal bacteremia clinical isolate SCB34. This characteristic, along with its enhanced ability to invade and transcytose intestinal epithelium are likely determined by the specific virulence factors that predominate in this strain.


Asunto(s)
Bacteriemia/microbiología , Infecciones por Escherichia coli/microbiología , Escherichia coli/patogenicidad , Enfermedades del Recién Nacido/microbiología , Escherichia coli/crecimiento & desarrollo , Humanos , Recién Nacido , Virulencia
9.
Infect Immun ; 85(2)2017 02.
Artículo en Inglés | MEDLINE | ID: mdl-27920211

RESUMEN

We recently identified the Borrelia burgdorferi outer membrane protein (OMP) BB0406 and found that the gene encoding this OMP was cotranscribed with the gene encoding the OMP BB0405. Interestingly, BB0405 and BB0406 share 59% similarity and are grouped into the same B. burgdorferi paralogous gene family. Given their overall similarity, it is plausible that both OMPs have similar or overlapping functions in this pathogenic spirochete. BB0405 was recently shown to be required for mammalian infection despite the observations that BB0405 is poorly immunogenic and not recognized during mouse or human infection. BB0405 orthologs have also been shown to bind the complement regulator protein factor H. Therefore, to better elucidate the role of BB0405 and its paralog BB0406 during infection and in serum resistance, we examined both proteins in animal infection, factor H binding, and serum sensitivity assays. Our combined results suggest that BB0405- and BB0406-specific antibodies are borreliacidal and that both OMPs are immunogenic during nonhuman primate infection. Additionally, while BB0405 was found to be required for establishing mouse infection, BB0406 was not found to be essential for infectivity. In contrast to data from previous reports, however, neither OMP was found to bind human factor H or to be required for enhancing serum resistance of B. burgdorferi in vitro.


Asunto(s)
Proteínas de la Membrana Bacteriana Externa/inmunología , Proteínas de la Membrana Bacteriana Externa/metabolismo , Borrelia burgdorferi/inmunología , Borrelia burgdorferi/metabolismo , Enfermedad de Lyme/microbiología , Secuencia de Aminoácidos , Animales , Anticuerpos Antibacterianos/inmunología , Anticuerpos Antibacterianos/farmacología , Antígenos Bacterianos/química , Antígenos Bacterianos/inmunología , Antígenos Bacterianos/metabolismo , Proteínas de la Membrana Bacteriana Externa/genética , Borrelia burgdorferi/efectos de los fármacos , Borrelia burgdorferi/genética , Factor H de Complemento/inmunología , Factor H de Complemento/metabolismo , Secuencia Conservada , Modelos Animales de Enfermedad , Expresión Génica , Marcación de Gen , Prueba de Complementación Genética , Humanos , Ratones , Mutación , Unión Proteica
10.
Mol Microbiol ; 102(5): 757-774, 2016 12.
Artículo en Inglés | MEDLINE | ID: mdl-27588694

RESUMEN

Two outer membrane protein (OMP) transport systems in diderm bacteria assist in assembly and export of OMPs. These two systems are the ß-barrel assembly machine (BAM) complex and the translocation and assembly module (TAM). The BAM complex consists of the OMP component BamA along with several outer membrane associated proteins. The TAM also consists of an OMP, designated TamA, and a single inner membrane (IM) protein, TamB. Together TamA and TamB aid in the secretion of virulence-associated OMPs. In this study we characterized the hypothetical protein BB0794 in Borrelia burgdorferi. BB0794 contains a conserved DUF490 domain, which is a motif found in all TamB proteins. All spirochetes lack a TamA ortholog, but computational and physicochemical characterization of BB0794 revealed it is a TamB ortholog. Interestingly, BB0794 was observed to interact with BamA and a BB0794 regulatable mutant displayed altered cellular morphology and antibiotic sensitivity. The observation that B. burgdorferi contains a TamB ortholog that interacts with BamA and is required for proper outer membrane biogenesis not only identifies a novel role for TamB-like proteins, but also may explain why most diderms harbor a TamB-like protein while only a select group encodes TamA.


Asunto(s)
Proteínas de la Membrana Bacteriana Externa/metabolismo , Borrelia burgdorferi/metabolismo , Proteínas de Unión al ADN/metabolismo , Dominios Proteicos , Pliegue de Proteína , Estructura Terciaria de Proteína , Transporte de Proteínas , Relación Estructura-Actividad
11.
BMC Microbiol ; 16(1): 141, 2016 07 11.
Artículo en Inglés | MEDLINE | ID: mdl-27400788

RESUMEN

BACKGROUND: Similar to Gram-negative organisms, Borrelia spirochetes are dual-membrane organisms with both an inner and outer membrane. Although the outer membrane contains integral membrane proteins, few of the borrelial outer membrane proteins (OMPs) have been identified and characterized to date. Therefore, we utilized a consensus computational network analysis to identify novel borrelial OMPs. RESULTS: Using a series of computer-based algorithms, we selected all protein-encoding sequences predicted to be OM-localized and/or to form ß-barrels in the borrelial OM. Using this system, we identified 41 potential OMPs from B. burgdorferi and characterized three (BB0838, BB0405, and BB0406) to confirm that our computer-based methodology did, in fact, identify borrelial OMPs. Triton X-114 phase partitioning revealed that BB0838 is found in the detergent phase, which would be expected of a membrane protein. Proteolysis assays indicate that BB0838 is partially sensitive to both proteinase K and trypsin, further indicating that BB0838 is surface-exposed. Consistent with a prior study, we also confirmed that BB0405 is surface-exposed and associates with the borrelial OM. Furthermore, we have shown that BB0406, the product of a co-transcribed downstream gene, also encodes a novel, previously uncharacterized borrelial OMP. Interestingly, while BB0406 has several physicochemical properties consistent with it being an OMP, it was found to be resistant to surface proteolysis. Consistent with BB0405 and BB0406 being OMPs, both were found to be capable of incorporating into liposomes and exhibit pore-forming activity, suggesting that both proteins are porins. Lastly, we expanded our computational analysis to identify OMPs from other borrelial organisms, including both Lyme disease and relapsing fever spirochetes. CONCLUSIONS: Using a consensus computer algorithm, we generated a list of candidate OMPs for both Lyme disease and relapsing fever spirochetes and determined that three of the predicted B. burgdorferi proteins identified were indeed novel borrelial OMPs. The combined studies have identified putative spirochetal OMPs that can now be examined for their roles in virulence, physiology, and disease pathogenesis. Importantly, the studies described in this report provide a framework by which OMPs from any human pathogen with a diderm ultrastructure could be cataloged to identify novel virulence factors and vaccine candidates.


Asunto(s)
Proteínas de la Membrana Bacteriana Externa/química , Borrelia burgdorferi/química , Algoritmos , Secuencia de Aminoácidos , Proteínas de la Membrana Bacteriana Externa/genética , Proteínas de la Membrana Bacteriana Externa/aislamiento & purificación , Proteínas de la Membrana Bacteriana Externa/metabolismo , Borrelia burgdorferi/genética , Borrelia burgdorferi/metabolismo , Redes de Comunicación de Computadores , Metodologías Computacionales , Consenso , Genoma Bacteriano , Humanos , Liposomas/metabolismo , Enfermedad de Lyme/microbiología , Operón , Porinas/metabolismo , Potencia de la Vacuna , Factores de Virulencia/metabolismo
12.
J Okla State Med Assoc ; 108(3): 93-101, 2015 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-26242016

RESUMEN

PURPOSE: In response to National Institutes of Health initiatives to improve translation of basic science discoveries we surveyed faculty to assess patterns of and barriers to translational research in Oklahoma. METHODS: An online survey was administered to University of Oklahoma Health Sciences Center, College of Medicine faculty, which included demographic and research questions. Results: Responses were received from 126 faculty members (24%). Two-thirds spent ≥ 20%time on research; among these, 90% conduct clinical and translational research. Identifying funding; recruiting research staff and participants; preparing reports and agreements; and protecting research time were commonly perceived as at least moderate barriers to conducting research. While respondents largely collaborated within their discipline, clinical investigators were more likely than basic science investigators to engage in interdisciplinary research. CONCLUSION: While engagement in translational research is common, specific barriers impact the research process. This could be improved through an expanded interdisciplinary collaboration and research support structure.


Asunto(s)
Investigación Biomédica/organización & administración , Docentes Médicos/organización & administración , Comunicación Interdisciplinaria , Investigación Biomédica Traslacional/organización & administración , Conducta Cooperativa , Estudios Transversales , Recolección de Datos , Docentes Médicos/estadística & datos numéricos , Femenino , Humanos , Masculino , National Institutes of Health (U.S.) , Oklahoma , Estados Unidos
13.
BMC Microbiol ; 15: 70, 2015 Mar 24.
Artículo en Inglés | MEDLINE | ID: mdl-25887384

RESUMEN

BACKGROUND: Like all diderm bacteria studied to date, Borrelia burgdorferi possesses a ß-barrel assembly machine (BAM) complex. The bacterial BAM complexes characterized thus far consist of an essential integral outer membrane protein designated BamA and one or more accessory proteins. The accessory proteins are typically lipid-modified proteins anchored to the inner leaflet of the outer membrane through their lipid moieties. We previously identified and characterized the B. burgdorferi BamA protein in detail and more recently identified two lipoproteins encoded by open reading frames bb0324 and bb0028 that associate with the borrelial BamA protein. The role(s) of the BAM accessory lipoproteins in B. burgdorferi is currently unknown. RESULTS: Structural modeling of B. burgdorferi BB0028 revealed a distinct ß-propeller fold similar to the known structure for the E. coli BAM accessory lipoprotein BamB. Additionally, the structural model for BB0324 was highly similar to the known structure of BamD, which is consistent with the prior finding that BB0324 contains tetratricopeptide repeat regions similar to other BamD orthologs. Consistent with BB0028 and BB0324 being BAM accessory lipoproteins, mutants lacking expression of each protein were found to exhibit altered membrane permeability and enhanced sensitivity to various antimicrobials. Additionally, BB0028 mutants also exhibited significantly impaired in vitro growth. Finally, immunoprecipitation experiments revealed that BB0028 and BB0324 each interact specifically and independently with BamA to form the BAM complex in B. burgdorferi. CONCLUSIONS: Combined structural studies, functional assays, and co-immunoprecipitation experiments confirmed that BB0028 and BB0324 are the respective BamB and BamD orthologs in B. burgdorferi, and are important in membrane integrity and/or outer membrane protein localization. The borrelial BamB and BamD proteins both interact specifically and independently with BamA to form a tripartite BAM complex in B. burgdorferi. A working model has been developed to further analyze outer membrane biogenesis and outer membrane protein transport in this pathogenic spirochete.


Asunto(s)
Proteínas de la Membrana Bacteriana Externa/metabolismo , Borrelia burgdorferi/enzimología , Lipoproteínas/metabolismo , Proteínas de la Membrana Bacteriana Externa/química , Proteínas de la Membrana Bacteriana Externa/genética , Borrelia burgdorferi/química , Borrelia burgdorferi/genética , Borrelia burgdorferi/crecimiento & desarrollo , Eliminación de Gen , Lipoproteínas/química , Lipoproteínas/genética , Modelos Moleculares , Permeabilidad , Unión Proteica , Conformación Proteica , Multimerización de Proteína
14.
Genome Announc ; 3(1)2015 Feb 26.
Artículo en Inglés | MEDLINE | ID: mdl-25720688

RESUMEN

Neonatal bacteremia Escherichia coli strains commonly belong to the K1 capsular type. Their ability to cause invasive neonatal disease appears to be determined by other virulence factors that have yet to be identified. We report here the genome sequences of four E. coli neonatal bacteremia isolates, including that of the archetypal strain RS218.

15.
Genome Announc ; 2(3)2014 Jun 12.
Artículo en Inglés | MEDLINE | ID: mdl-24926049

RESUMEN

SCB34 is a sequence type 131, highly invasive, multidrug-resistant Escherichia coli isolate that produced neonatal bacteremia. Whole-genome sequencing was performed using a 250-bp library on the Illumina MiSeq platform; 5,910,264 reads were assembled de novo using the A5 assembly pipeline. The total contig length was 5,227,742 bp; the RAST server was used for annotation.

16.
J Bacteriol ; 196(4): 859-72, 2014 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-24317399

RESUMEN

The Borrelia burgdorferi outer membrane (OM) contains numerous surface-exposed lipoproteins but a relatively low density of integral OM proteins (OMPs). Few membrane-spanning OMPs of B. burgdorferi have been definitively identified, and none are well characterized structurally. Here, we provide evidence that the borrelial OMP P66, a known adhesin with pore-forming activity, forms a ß-barrel in the B. burgdorferi OM. Multiple computer-based algorithms predict that P66 forms a ß-barrel with either 22 or 24 transmembrane domains. According to our predicted P66 topology, a lysine residue (K487) known to be sensitive to trypsin cleavage is located within a surface-exposed loop. When we aligned the mature P66 amino acid sequences from B. burgdorferi and B. garinii, we found that K487 was present only in the B. burgdorferi P66 protein sequence. When intact cells from each strain were treated with trypsin, only B. burgdorferi P66 was trypsin sensitive, indicating that K487 is surface exposed, as predicted. Consistent with this observation, when we inserted a c-Myc tag adjacent to K487 and utilized surface localization immunofluorescence, we detected the loop containing K487 on the surface of B. burgdorferi. P66 was examined by both Triton X-114 phase partitioning and circular dichroism, confirming that the protein is amphiphilic and contains extensive (48%) ß-sheets, respectively. Moreover, P66 also was able to incorporate into liposomes and form channels in large unilamellar vesicles. Finally, blue native PAGE (BN-PAGE) revealed that under nondenaturing conditions, P66 is found in large complexes of ∼400 kDa and ∼600 kDa. Outer surface lipoprotein A (OspA) and OspB both coimmunoprecipitate with P66, demonstrating that P66 associates with OspA and OspB in B. burgdorferi. The combined computer-based structural analyses and supporting physicochemical properties of P66 provide a working model to further examine the porin and integrin-binding activities of this OMP as they relate to B. burgdorferi physiology and Lyme disease pathogenesis.


Asunto(s)
Proteínas Bacterianas/química , Borrelia burgdorferi/química , Porinas/química , Antígenos Bacterianos/metabolismo , Antígenos de Superficie/metabolismo , Proteínas de la Membrana Bacteriana Externa/metabolismo , Proteínas Bacterianas/análisis , Proteínas Bacterianas/genética , Vacunas Bacterianas/metabolismo , Borrelia burgdorferi/genética , Inmunoprecipitación , Lipoproteínas/metabolismo , Modelos Moleculares , Porinas/análisis , Porinas/genética , Unión Proteica , Conformación Proteica , Multimerización de Proteína , Proteolisis , Proteínas Recombinantes de Fusión/análisis , Proteínas Recombinantes de Fusión/genética , Tripsina/metabolismo
17.
FEMS Immunol Med Microbiol ; 66(1): 1-19, 2012 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-22540535

RESUMEN

Human pathogenic spirochetes causing Lyme disease belong to the Borrelia burgdorferi sensu lato complex. Borrelia burgdorferi organisms are extracellular pathogens transmitted to humans through the bite of Ixodes spp. ticks. These spirochetes are unique in that they can cause chronic infection and persist in the infected human, even though a robust humoral and cellular immune response is produced by the infected host. How this extracellular pathogen is able to evade the host immune response for such long periods of time is currently unclear. To gain a better understanding of how this organism persists in the infected human, many laboratories have focused on identifying and characterizing outer surface proteins of B. burgdorferi. As the interface between B. burgdorferi and its human host is its outer surface, proteins localized to the outer membrane must play an important role in dissemination, virulence, tissue tropism, and immune evasion. Over the last two decades, numerous outer surface proteins from B. burgdorferi have been identified, and more recent studies have begun to elucidate the functional role(s) of many borrelial outer surface proteins. This review summarizes the outer surface proteins identified in B. burgdorferi to date and provides detailed insight into the functions of many of these proteins as they relate to the unique parasitic strategy of this spirochetal pathogen.


Asunto(s)
Proteínas de la Membrana Bacteriana Externa/fisiología , Grupo Borrelia Burgdorferi/inmunología , Grupo Borrelia Burgdorferi/patogenicidad , Evasión Inmune , Proteínas de la Membrana/fisiología , Factores de Virulencia/fisiología , Animales , Humanos , Ixodes
18.
BMC Microbiol ; 12: 60, 2012 Apr 20.
Artículo en Inglés | MEDLINE | ID: mdl-22519960

RESUMEN

BACKGROUND: Similar to Gram-negative bacteria, the outer membrane (OM) of the pathogenic spirochete, Borrelia burgdorferi, contains integral OM-spanning proteins (OMPs), as well as membrane-anchored lipoproteins. Although the mechanism of OMP biogenesis is still not well-understood, recent studies have indicated that a heterooligomeric OM protein complex, known as BAM (ß-barrel assembly machine) is required for proper assembly of OMPs into the bacterial OM. We previously identified and characterized the essential ß-barrel OMP component of this complex in B. burgdorferi, which we determined to be a functional BamA ortholog. RESULTS: In the current study, we report on the identification of two additional protein components of the B. burgdorferi BAM complex, which were identified as putative lipoproteins encoded by ORFs BB0324 and BB0028. Biochemical assays with a BamA-depleted B. burgdorferi strain indicate that BB0324 and BB0028 do not readily interact with the BAM complex without the presence of BamA, suggesting that the individual B. burgdorferi BAM components may associate only when forming a functional BAM complex. Cellular localization assays indicate that BB0324 and BB0028 are OM-associated subsurface lipoproteins, and in silico analyses indicate that BB0324 is a putative BamD ortholog. CONCLUSIONS: The combined data suggest that the BAM complex of B. burgdorferi contains unique protein constituents which differ from those found in other proteobacterial BAM complexes. The novel findings now allow for the B. burgdorferi BAM complex to be further studied as a model system to better our understanding of spirochetal OM biogenesis in general.


Asunto(s)
Proteínas de la Membrana Bacteriana Externa/biosíntesis , Borrelia burgdorferi/metabolismo , Complejos Multiproteicos/biosíntesis , Secuencia de Aminoácidos , Datos de Secuencia Molecular , Sistemas de Lectura Abierta , Estructura Terciaria de Proteína
19.
Infect Immun ; 79(8): 3117-30, 2011 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-21606185

RESUMEN

Two-component systems (TCS) are principal mechanisms by which bacteria adapt to their surroundings. Borrelia burgdorferi encodes only two TCS. One is comprised of a histidine kinase, Hk2, and the response regulator Rrp2. While the contribution of Hk2 remains unclear, Rrp2 is part of a regulatory pathway involving the spirochete's alternate sigma factors, RpoN and RpoS. Genes within the Rrp2/RpoN/RpoS regulon function to promote tick transmission and early infection. The other TCS consists of a hybrid histidine kinase, Hk1, and the response regulator Rrp1. Hk1 is composed of two periplasmic sensor domains (D1 and D2), followed by conserved cytoplasmic histidine kinase core, REC, and Hpt domains. In addition to its REC domain, Rrp1 contains a GGDEF motif characteristic of diguanylate cyclases. To investigate the role of Hk1 during the enzootic cycle, we inactivated this gene in two virulent backgrounds. Extensive characterization of the resulting mutants revealed a dramatic phenotype whereby Hk1-deficient spirochetes are virulent in mice and able to migrate out of the bite site during feeding but are killed within the midgut following acquisition. We hypothesize that the phosphorelay between Hk1 and Rrp1 is initiated by the binding of feeding-specific ligand(s) to Hk1 sensor domain D1 and/or D2. Once activated, Rrp1 directs the synthesis of cyclic dimeric GMP (c-di-GMP), which, in turn, modulates the expression and/or activity of gene products required for survival within feeding ticks. In contrast to the Rrp2/RpoN/RpoS pathway, which is active only within feeding nymphs, the Hk1/Rrp1 TCS is essential for survival during both larval and nymphal blood meals.


Asunto(s)
Borrelia burgdorferi/enzimología , Borrelia burgdorferi/fisiología , Ixodes/microbiología , Viabilidad Microbiana , Proteínas Quinasas/metabolismo , Animales , Modelos Animales de Enfermedad , Femenino , Técnicas de Inactivación de Genes , Histidina Quinasa , Enfermedad de Lyme/microbiología , Ratones , Ratones Endogámicos C3H , Proteínas Quinasas/deficiencia , Enfermedades de los Roedores/microbiología , Transducción de Señal , Estrés Fisiológico , Virulencia
20.
Infect Immun ; 79(4): 1451-7, 2011 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-21282413

RESUMEN

Borrelia burgdorferi, the Lyme disease spirochete, binds the host complement inhibitors factor H (FH) and FH-like protein 1 (FHL-1). Binding of FH/FHL-1 by the B. burgdorferi proteins CspA and the OspE-related proteins is thought to enhance resistance to serum-mediated killing. While previous reports have shown that CspA confers serum resistance in B. burgdorferi, it is unclear whether the OspE-related proteins are relevant in B. burgdorferi serum resistance when OspE is expressed on the borrelial surface. To assess the role of the OspE-related proteins, we overexpressed them in a serum-sensitive CspA mutant strain. OspE overexpression enhanced serum resistance of the CspA-deficient organisms. Furthermore, FH was more efficiently bound to the B. burgdorferi surface when OspE was overexpressed. Deposition of complement components C3 and C5b-9 (the membrane attack complex), however, was reduced on the surface of the OspE-overexpressing strain compared to that on the CspA mutant strain. These data demonstrate that OspE proteins expressed on the surface of B. burgdorferi bind FH and protect the organism from complement deposition and subsequent serum-mediated destruction.


Asunto(s)
Antígenos Bacterianos/inmunología , Proteínas de la Membrana Bacteriana Externa/inmunología , Actividad Bactericida de la Sangre/inmunología , Borrelia burgdorferi/inmunología , Factor H de Complemento/inmunología , Lipoproteínas/inmunología , Enfermedad de Lyme/inmunología , Antígenos Bacterianos/metabolismo , Proteínas de la Membrana Bacteriana Externa/metabolismo , Borrelia burgdorferi/metabolismo , Proteínas Inactivadoras del Complemento C3b/inmunología , Proteínas Inactivadoras del Complemento C3b/metabolismo , Factor H de Complemento/metabolismo , Electroforesis en Gel de Poliacrilamida , Humanos , Inmunoensayo , Immunoblotting , Lipoproteínas/metabolismo , Enfermedad de Lyme/metabolismo , Suero/inmunología , Suero/metabolismo
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