Price determinants of beef bulls sold in livestock auctions

The main objective of this study was to evaluate the effects of phenotypic, genotypic, and auction characteristics that may influence the selling prices of bulls. Data from 1,540 Braford and 1,179 Brangus bulls sold at auctions in the state of Rio Grande do Sul, Brazil, were collected and evaluated individually. Body condition score (BCS), muscularity, frame, foreskin size, presence or absence of horns, and data regarding the auction such as name/venue, event edition, forms of payment, among others, were considered. Information such as weight at the time of sale, scrotal circumference (SC), expected profit differences, selection indexes, and date of birth were collected from the catalogs supplied at the auctions. To obtain the influence of the selected explanatory variables throughout the conditional distribution of bull prices, a quantile regression was used, and the quantiles were established as follows: 10th, 25th, 50th, 75th, and 90th. The buyers of Braford and Brangus bulls valued characteristics such as age, weight, and SC in relation to frame, muscularity, BCS, and foreskin size. In addition, the price behavior at different auctions was positively related to the operation time of the auction in this market and with the reputation of the seller. Regarding genetic variables of Brangus bulls, these had little or no influence on the selling price. There was a positive influence on the weaning index in the 90th quantile and on the final index in the 50th and 75th quantiles. Buyers of synthetic bull breeds at auctions value the phenotypic characteristics of bulls more than they do genetic characteristics, which may not reflect permanent gains in the cattle herd.(AU)

Characterization of yellow pitahaya (Selenicereus megalanthus Haw) genotypes under two productive systems in Colombia / Caracterização de genótipos de pitaia amarela (Selenicereus megalanthus Haw) a partir de dois sistemas produtivos na Colômbia

Selenicereus megalanthus Haw. It is an exotic fruit tree, with productive and nutritional potential. In Colombia, there is a great phenotypic and genotypic diversity, but its genetic studies are scarce. The objective was to characterize morphologically 15 selected yellow pitahaya genotypes, under two productive systems in the open field and under cover, in the municipalities of Miraflores and Zetaquira, in Boyacá, Colombia. Quantitative characters were evaluated: plant height (PH), number of vegetative sprouts (NVS), sub-sprouts (SS), longest sprouts length (LSL), distance between areoles (DBA), width of the ribs in the apical region (WRA), width of the ribs in the middle region (WRM), width of the ribs in the basal region (WRB), height of undulations between successive areoles in a rib (HUA), number of spines per areole (NSA) and longest spine length (LSP). The results showed under the two productive systems and the evaluated localities that the variables with the highest coefficient of variation (greater than 90%) were the number of sub-sprouts, height of the undulations between successive areoles (HUA) and the longest spine length (LSP). High positive correlations were obtained between the distances areoles, the width of the ribs and the length of the spines (r>0.7). The conglomerate showed that the characteristics that define the groupings are height of the plant, the texture of the cladodes, the width of the ribs and the height of the undulations. Characters associated with the shoots and cladodes were identified, which directly influence the vegetative propagation and therefore the yield of the yellow pitahaya.

Selenicereus megalanthus Haw é uma fruteira exótica, com potencial produtivo e nutricional. Na Colômbia existe uma grande diversidade fenotípica e genotípica, mas seus estudos genéticos são escassos. O objetivo deste trabalho foi caracterizar morfologicamente 15 genótipos selecionados de pitaya amarela, a partir de dois sistemas produtivos em campo aberto e sob cobertura, nos municípios de Miraflores e Zetaquira, em Boyacá, Colômbia. Foram avaliados os caracteres quantitativos: altura da planta (PH), número de brotos vegetativos (NVS), sub-brotos (SS), maior comprimento dos brotos (LSL), distância entre aréolas (DBA), largura das nervuras na região apical (WRA), largura das costelas na região média (WRM), largura das costelas na região basal (WRB), altura das ondulações entre aréolas sucessivas em uma costela (HUA), número de espinhos por aréola (NSA) e maior espinha comprimento (LSL). Os resultados mostraram nos dois sistemas produtivos e nas localidades avaliadas que as variáveis com maior coeficiente de variação (maior que 90%) foram o número de sub-brotos, altura das ondulações entre aréolas sucessivas (HUA) e o maior comprimento do espinho (LSL). Altas correlações positivas foram obtidas entre as distâncias entre as aréolas, a largura das costelas e o comprimento dos espinhos (r > 0.07). O conglomerado mostrou que as características que definem os agrupamentos são a altura da planta, a textura dos cladódios, a largura das nervuras e a altura das ondulações. Foram identificados caracteres associados à brotação e aos cladódios, que influenciam diretamente na propagação vegetativa e, consequentemente, na produção da pitaya-amarela.

Juvenile Huntington's disease in northern Brazil: a case series report / Doença de Huntington juvenil no norte do Brasil: relato de uma série de casos

Introduction: Huntington's disease (HD) is a neurodegenerative disorder caused by CAG expansion repeats in the HTT gene. Usually, the symptoms start to manifest in mid-adulthood. In about 5% of cases, however, the signs begin before the age of 20 years. These cases are known as juvenile HD (JHD). Objective: here we report a case series of JHD from Amazonas, a state where data are scarce due to the restricted access to specialized medical assistance for diagnosis and care. Case series: the patients were attended by neurologists specialized in movement disorders at Manaus. Two cases manifested the disease in childhood (6 and 7 years old) and two cases, in adolescence (12 and 16 years old). All cases showed dystonia and parkinsonism as predominant motor disorders. Moreover, signs of cognitive decline, depression, and psychosis were observed in all patients. Conversely, cerebellar signs, gait disturbances, seizures, and some psychiatric symptoms were variable among the cases. Expansion size varied from 66 to 84 to CAG repeats and the difference in age at onset between parent and child varied from 23 to 43 years. Conclusion: to our knowledge, these are the first clinical reports of JHD in northern Brazil. These cases illustrate the variability in clinical phenotypes and genetic features of JHD cases. Furthermore, they can contribute to the awareness of HD here, both by professionals and the public in general.

Introdução: a doença de Huntington (DH) é um distúrbio neurodegenerativo causado pela expansão de repetições CAG no gene HTT. Geralmente, os sintomas começam a se manifestar na vida adulta tardia. Em cerca de 5% dos casos, no entanto, os sinais começam antes da idade de 20 anos. Esses casos são conhecidos como DH juvenil (DHJ). Objetivo: neste estudo, nós reportamos uma série de casos de DHJ do Amazonas, um estado onde os dados ainda são escassos devido ao acesso restrito à assistência médica especializada para o diagnóstico e cuidado. Série de casos: os pacientes foram atendidos por neurologistas especializados em transtornos do movimento em Manaus. Dois casos manifestaram a doença na infância (6 e 7 anos) e dois casos, na adolescência (12 e 16 anos). Todos os casos apresentaram distonia e parkinsonismo como sintomas motores predominantes. Sinais de declínio cognitivo, depressão e psicose também foram observados em todos os pacientes. Por outro lado, sinais cerebelares, distúrbios da marcha, convulsões e alguns sintomas psiquiátricos foram variáveis entre os casos. O tamanho da expansão CAG variou de 66 a 84 repetições e a diferença na idade de início dos sintomas entre pais e filhos variou de 23 a 43 anos. Conclusão: ao nosso conhecimento, estes são os primeiros relatos clínicos da DHJ na região Norte. Esses casos ilustram a variabilidade nos fenótipos clínicos e nas características genéticas dos casos de DHJ. Além disso, eles podem contribuir para a conscientização da DH na região, tanto pelos profissionais quanto pelo público geral.

Evaluación fenotípica de semillas de haba (Vicia faba L.) colectadas en Nariño-Colombia / Phenotypic evaluation of broad bean (Vicia faba L.) seeds collected in Nariño-Colombia

RESUMEN El haba es una leguminosa asociada a sistemas campesinos de clima frío. En Colombia, se cultiva, principalmente, en el departamento de Nariño, donde se ha visto reducida el área y el número de materiales sembrados, debido a la disminución en los niveles de rendimiento del cultivo y la agresividad de los problemas fitosanitarios. Este estudio evaluó la diversidad de esta leguminosa, a partir de la forma y color de la semilla, en una colección de 60 accesiones de haba, discriminadas en siete variedades. Mediante el procesamiento de imágenes digitales y medición manual, se determinó la longitud polar (LP), longitud ecuatorial (LE), relación LP/LE, área (AR), grosor (GR) y peso de cien semillas (P100); además, se calcularon los parámetros de color, basados en la escala CIELab (L*, a* y b*). Las variables, se analizaron con estadística descriptiva, correlación de Pearson y el método multivariado de componentes principales (ACP). Los resultados identificaron alta diversidad de fenotipos, caracterizando, cuantitativamente, las siete variedades. Se presentó correlación alta entre las variables LP, LE y AR, igualmente, entre L* y b*. Con el biplot de los resultados de ACP, se ratificó la variabilidad de la colección y posibilitó generar una agrupación preliminar. La investigación, se puede tomar en cuenta como base para el desarrollo de trabajos de conservación y de evaluación agronómica de esta leguminosa.

ABSTRACT Fava bean is a legume associated with cold climate farming systems. In Colombia, it is grown mainly in the department of Nariño, where the area and number of planted materials have been reduced due to the decrease in crop yield levels and the aggressiveness of phytosanitary problems. This study evaluated the diversity of this legume based on seed shape and color in a collection of 60 bean materials divided into seven varieties. Through digital image processing and manual measurement, polar length (LP), equatorial length (LE), LP/LE ratio, area (AR), thickness (GR) and hundred seed weight (P100) were determined, and color parameters based on the CIELab scale (L*, a* and b*) were calculated. The variables were analyzed with descriptive statistics, Pearson's correlation and the multivariate principal component method (PCA). The results identified a high diversity of phenotypes, quantitatively characterizing the seven varieties. There was a high correlation between the variables LP, LE and AR, as well as between L* and b*. The biplot of the PCA results confirmed the variability of the collection and made it possible to generate a preliminary grouping. The research can be taken into account as a basis for the development of conservation and agronomic evaluation of this legume.

Phenotypic Diversity of Morphological Characteristics of Pitahaya (Selenicereus Megalanthus Haw.) Germplasm in Colombia.

Yellow pitahaya is an exotic fruit that is rich in essential nutrients and antioxidants. In Colombia, it grows naturally in warm areas, but it is not clear which species exist because this genus presents a lot of intra and interspecific hybridization. More studies are needed in this field along with characterizations of the genotypes. This study aimed to undertake an in situ morphoagronomic evaluation of yellow pitahaya genotypes from five municipalities in Boyacá, Colombia. Measurements were taken in a completely random design. Qualitative and quantitative descriptors for cladodes, fruits and covered production systems were evaluated with a descriptive analysis, Spearman correlation variance, and multivariate and cluster analysis. The results showed that cladode characteristics such as cladode width, distance between areoles, number of spines, length of areoles, margin ribs of cladode and waxiness could be used to identify Megalanthus spp. Characteristics such as weight (270-274 g), size (100 mm), color of the fruit and pulp as well as acidity (0.18) and soluble solids (15.7) were highly variable between the genotypes. Genotypes with good morphological and fruit characteristics were identified (Gen2 and Gen9), which can provide the bases for the selection of pitahaya that satisfy the needs of farmers and consumers.

Chromatic and Morphological Differentiation of Triatoma dimidiata (Hemiptera: Reduviidae) with Land Use Diversity in El Salvador.

Chagas disease is caused by the parasite Trypanosoma cruzi, which is transmitted by insect-vectors in the taxonomic subfamily Triatominae and affects approximately 8,000,000 people world-wide. Current mitigation strategies for Chagas focus on insecticides, infrastructure improvements, and management of symptoms, which are largely unsustainable in underserved communities where the disease is widespread. Transmission patterns of vector-borne diseases are known to adaptively respond to habitat change; as such, the objective of our study was to evaluate how the physical characteristics of Triatoma dimidiata would vary in relation to land use in El Salvador. We hypothesized that the color and morphology of T. dimidiata would change with municipal levels of urban and natural green space, natural green space, and agricultural space, as well as municipal diversity, richness, and evenness of land use types. Our results characterize how T. dimidiata color and morphology vary directly with anthropogenic changes to natural and agricultural environments, which are reflective of a highly adaptable population primed to respond to environmental change. Mitigation studies of Chagas disease should exploit the relationships between anthropogenic land use and T. dimidiata morphology to evaluate how the transmission pattern of T. cruzi and Chagas disease symptomology are impacted.

Phenotypic variation in a neotropical understory bird driven by environmental change in an urbanizing Amazonian landscape.

Environmental change through habitat fragmentation and urbanization drives biodiversity loss in the Neotropics at an alarming rate. Some individuals and species confined to habitat fragments may develop phenotypic adjustments that allow populations to persist, even in landscapes made harsh by human activities. Behavioral and morphological adjustments may enhance a population's ability to cope with anthropogenic hazards. We examined potential differences in the behavioral and morphological phenotype of populations of the neotropical Wedge-billed Woodcreeper (Glyphorynchus spirurus)-an understory forest specialist insectivorous bird-between populations from urban fragmented forests and continuous preserved forests. We evaluated exploratory behavior and morphological traits using generalized linear models and linear discriminant analysis to quantify phenotypical differences among populations. We used failure time analysis to compare latency to explore and move during exploration in a Novel Environment Test (NET). Our analyses detected differences in certain movement behaviors (latencies to move during NET), indicating that individuals from fragmented forests are slow explorers in relation to individuals from the continuous forest. We also found shorter tarsi and tails in the fragmented forest population which were attributed to an overall reduction in body size in these populations. Our results suggest that environmental change driven by fragmentation in an urban landscape is causing population differentiation, but we cannot ascribe observed variations to evolutionary processes only, as the differences observed may be explained by other processes too. However, we suggest that phenotypic differences may be aiding this small understory forest specialist to persist in an urban fragmented landscape.

Variación fenotípica de los peces Curimata mivartii (Characiformes: Curimatidae) y Pimelodus grosskopfii (Siluriformes: Pimelodidae) en hábitats lóticos y lénticos / Phenotypic variation of the fishes Curimata mivartii (Characiformes: Curimatidae) and Pimelodus grosskopfii (Siluriformes: Pimelodidae) in lotic and lentic habitats

Resumen Introducción: A pesar de su importancia en el rendimiento de la natación y la eficacia biológica individual, la forma del cuerpo y las variaciones de tamaño en respuesta a la velocidad del flujo de agua siguen siendo desconocidas para la mayoría de los peces migratorios de agua dulce en el Neotrópico. Objetivo: Contrastar la hipótesis de variación fenotípica en el tamaño y la conformación del cuerpo de dos especies de peces dulceacuícolas que enfrentan cambios de velocidad a través de sus migraciones en dos ríos pertenecientes a una cuenca neotropical. Métodos: Se utilizó la morfometría geométrica basada en hitos para estudiar las variaciones en el tamaño y la conformación del cuerpo para dos especies de peces Curimata mivartii y Pimelodus grosskopfii en hábitats lóticos y lénticos de la cuenca Colombiana del Magdalena-Cauca. Resultados: Los individuos de C. mivartii de dos hábitats lóticos fueron similares en tamaño y significativamente más grandes que los del hábitat léntico, mientras que los individuos de P. grosskopfii fueron similares en ambos hábitats. Ambas especies mostraron cuerpos más hidrodinámicos en hábitats lóticos y formas corporales más robustas en hábitats lénticos. Conclusión: Ambas especies exhiben cambios fenotípicos en la forma del cuerpo concordantes con las predicciones previas sobre las variaciones morfológicas de los peces. Esta información es relevante para predecir cambios en respuesta a la heterogeneidad ambiental, especialmente inducidos por actividades antropogénicas que cambian las velocidades del agua en el río.

Abstract Introduction: Despite their importance in swimming performance and individual fitness, body shape and size variations in response to water flow velocity remain unknown for most migratory freshwater fishes in the Neotropics. Objective: Test the hypothesis of phenotypic variation in the size and body shape of two species of freshwater fishes that encounter changes in water velocity across their migrations in two rivers that belong to a single Neotropical basin. Methods: Landmark-based geometric morphometrics was used to study variations in body size and shape for the fish species Curimata mivartii and Pimelodus grosskopfii in lotic and lentic habitats of the Colombian Magdalena-Cauca Basin. Results: Individuals of C. mivartii from two lotic habitats were similar in size and both were significantly bigger than those from lentic habitats, whereas individuals of P. grosskopfii were similar in size in both habitats. Both species showed more streamlined bodies in lotic habitats and deeper body shapes in lentic habitats. Conclusions: Both species exhibit phenotypic changes in body shape concordant with previous predictions on morphological variations of fishes. This information is relevant to predict changes in response to environmental heterogeneity, especially those induced by anthropogenic activities that change the water velocity in the river.

Will the emergent SARS-CoV2 B.1.1.7 lineage affect molecular diagnosis of COVID-19?

As the coronavirus disease 2019 pandemic keep tackling global public health systems worldwide. The severe acute respiratory syndrome coronavirus 2 (SARS-CoV2) genome keeps mutating. In that regard, the recent emergence of the B.1.1.7 lineage in the UK has called the attention of global authorities. One point of concern is that if this lineage can be detected by traditional molecular schemes for SARS-CoV-2 detection. Herein, we showed that this lineage does not affect the Berlin-Charité protocol but can challenge the available commercial kits directed to the Spike (S) gene. All efforts should be made to continue to monitor SARS-CoV-2 genomes for potential variants that can impair diagnostic testing and lead to false negative results.

Morphological Differences in Pinus strobiformis Across Latitudinal and Elevational Gradients.

The phenotype of trees is determined by the relationships and interactions among genetic and environmental influences. Understanding the patterns and processes that are responsible for phenotypic variation is facilitated by studying the relationships between phenotype and the environment among many individuals across broad ecological and climatic gradients. We used Pinus strobiformis, which has a wide latitudinal distribution, as a model species to: (a) estimate the relative importance of different environmental factors in predicting these morphological traits and (b) characterize the spatial patterns of standing phenotypic variation of cone and seed traits across the species' range. A large portion of the total variation in morphological characteristics was explained by ecological, climatic and geographical variables (54.7% collectively). The three climate, vegetation and geographical variable groups, each had similar total ability to explain morphological variation (43.4%, 43.8%, 51.5%, respectively), while the topographical variable group had somewhat lower total explanatory power (36.9%). The largest component of explained variance (33.6%) was the four-way interaction of all variable sets, suggesting that there is strong covariation in environmental, climate and geographical variables in their relationship to morphological traits of southwest white pine across its range. The regression results showed that populations in more humid and warmer climates expressed greater cone length and seed size. This may in part facilitate populations of P. strobiformis in warmer and wetter portions of its range growing in dense, shady forest stands, because larger seeds provide greater resources to germinants at the time of germination. Our models provide accurate predictions of morphological traits and important insights regarding the factors that contribute to their expression. Our results indicate that managers should be conservative during reforestation efforts to ensure match between ecotypic variation in seed source populations. However, we also note that given projected large range shift due to climate change, managers will have to balance the match between current ecotypic variation and expected range shift and changes in local adaptive optima under future climate conditions.

RELICT HUMID TROPICAL FOREST IN MEXICO PROMOTES DIFFERENTIATION IN BARRED WOODCREEPERS Dendrocolaptes (AVES: FURNARIIDAE).

Humid tropical forests in Mesoamerica are distributed along the Atlantic slope and, in scattered locations, along the Mexican Pacific slope. These poorly explored Mexican forests include microendemic bird species. Two species in the genus Dendrocolaptes occur in lowland and foothill humid tropical forests of Mesoamerica. One of these, D. sanctithomae, is comprised of four subspecies, of which the two that occur in Mexico, D. s. sanctithomae and D. s. sheffleri, are distinctly different morphologically, and the latter is a poorly known microendemic taxon of the Mexican Pacific humid tropical forest in the Sierra Madre del Sur. We used both nuclear (nDNA) and mitochondrial DNA (mtDNA) to evaluate the genetic variation of D. sanctithomae in Mexico, and complemented this with a quantitative analysis of phenotypic traits. We also conducted analyses of environmental niche models to test the hypothesis of niche differentiation of D. s. sheffleri from other taxa of D. sanctithomae. Our phylogenetic reconstructions of mtDNA consistently recovered D. s. sheffleri and D. s. sanctithomae as reciprocally monophyletic, while they shared alleles of nDNA. These mtDNA differences are comparable with differences reported between other Dendrocolaptes sister-taxa pairs. Our analysis of phenotypic traits also indicated that the taxa differ in measurements of hallux and feather barring. In contrast, niche differentiation tests suggest that the niches of both taxa are more similar than expected by chance. Our evidence leads us to propose species status for D. sheffleri. This is an additional example of recent speciation in Mexico that indicates active and peripatric evolutionary differentiation in the northern Neotropics.

Morphological variability and ecological characterization of the Chagas disease vector Triatoma dimidiata (Hemiptera: Reduviidae) in El Salvador.

There are 8 million people with Chagas disease worldwide and in El Salvador approximately 39% of the population is at risk of contracting the disease. One of the principal challenges in mitigating Chagas is evaluating the role of the vector ecology of triatomine species in the transmission of the Trypanosoma cruzi parasite in anthropogenically modified habitats, where new patterns of transmission frequently arise. Field studies of triatomine vector ecology in El Salvador have largely focused on describing parameters that contribute to infestation patterns, which may themselves be rooted in the morphological variability that exists in triatomine populations. The objective of this study was to evaluate the morphology of the vector species Triatoma dimidiata with respect to the characteristics of the ecological landscape the vector inhabits throughout El Salvador. We used image analyses to evaluate T. dimidiata morphological variability and then used Geographic Information Systems to intersect the morphological point-data with map layers containing different environmental characteristics. Our study found that the variation in the size, shape, and coloration of T. dimidiata varied in relation to elevation, Holdridge life zone, soil type and land use. We further characterize the local morphological adaptations of T. dimidiata with respect to the local ecological, biological, and geographical conditions in El Salvador. We suggest that future studies consider a molecular exploration of local T. dimidiata species complex in El Salvador, especially since morphological studies of triatomine species complex have found that variability correlate with the genetic variability of the population.

Non-linear mixed models in the study of growth of naturalized chickens

This study was conducted to examine the inclusion of random effects in non-linear models, identify the most suitable models, and describe the growth of naturalized chickens. Live-weight records of 166 birds of the Graúna Dourada, Nordestina, and Teresina ecotypes were estimated. The asymptotic weight (A), integration constant, related to animal initial weight (B), and the maturing rate (k) parameters of the non-linear Gompertz, Logistic, and von Bertalanffy models were estimated and adjusted using the Gauss-Newton method. Residual variance decreased by more than 50% when random effects were added to the model. The best fits in the estimate of the growth curve of females were obtained by associating the random effects with the three parameters of the Gompertz and Logistic models. The association of random effects with two parameters (asymptotic weight and maturing rate) and with the three parameters of the Logistic model provided the best fits for the males. The Teresina ecotype has the highest adult weight in both sexes, despite its slower growth. The opposite is true for the Graúna Dourada ecotype, formed by lighter and earlier-growing animals. The inclusion of random effects in models provides greater accuracy in the estimate of the growth curve.(AU)

Fluctuating selection strength and intense male competition underlie variation and exaggeration of a water strider's male weapon.

Sexually selected traits can reach high degrees of phenotypic expression and variation under directional selection. A growing number of studies suggest that such selection can vary in space, time and form within and between populations. However, the impact of these fluctuations on sexual trait evolution is poorly understood. In the water strider Microvelia longipes, males display striking trait exaggeration and phenotypic variation manifested as extreme differences in the rear leg length. To study the origin and maintenance of this exaggerated trait, we conducted comparative behavioural, morphometric and reaction norm experiments in a selection of Microvelia species. We uncovered differences both in the mating behaviour and the degree of sexual dimorphism across these species. Interestingly, M. longipes evolved a specific mating behaviour where males compete for egg-laying sites, consisting of small floating objects, to intercept and copulate with gravid females. Through male-male competition assays, we demonstrated that male rear legs are used as weapons to dominate egg-laying sites and that intense competition is associated with the evolution of rear leg length exaggeration. Field observations revealed rapid fluctuation in M. longipes habitat stability and the abundance of egg-laying sites. Paternity tests using genetic markers demonstrated that small males could only fertilize about 5% of the eggs when egg-laying sites are limiting, whereas this proportion increased to about 20% when egg-laying sites become abundant. Furthermore, diet manipulation and artificial selection experiments also showed that the exaggerated leg length in M. longipes males is influenced by both genetic and nutritional factors. Collectively, our results highlight how fluctuation in the strength of directional sexual selection, through changes in the intensity of male competition, can drive the exaggeration and phenotypic variation in this weapon trait.

Morphometric studies of Sideritis scardica Grsb. and S. syriaca L. in their natural populations in Bulgaria / Estudios morfométricos de Sideritis scardica Grsb. y S. syriaca L. en sus poblaciones naturales en Bulgaria

The paper aimed at studying the morphometric variation in eight natural populations of two rare Sideritis species occurring in Bulgaria. Thirteen measured traits and four ratios were used to reveal the degree and distribution of variation. Most traits exhibited moderate to high variation and the most differentiating one was the length of the acumen. Cluster analysis and Principal component analysis revealed that the two taxa, S. scardica and S. syriaca are well distinguished but the population Chervenata stena, classified as S. scardica differed significantly from the remaining ones of the same species. Results of the morphometric study indicate the necessity of further studies for revealing the taxonomic relationships among the taxa.

El manuscrito tenía como objetivo estudiar la variación morfométrica en ocho poblaciones naturales de dos especies raras de Sideritis que crecen en Bulgaria. Se utilizaron trece rasgos medidos y cuatro relaciones para revelar el grado y la distribución de la variación. La mayoría de los rasgos mostraron una variación de moderada a alta y la más diferenciadora fue la longitud del acumen. El análisis de conglomerados y el análisis de componentes principales revelaron que los dos taxas, S. scardica y S. syriaca están bien diferenciados, pero la población de Chervenata stena, clasificada como S. scardica, difería significativamente de las restantes de la misma especie. Los resultados del estudio morfométrico indican la necesidad de estudios adicionales para revelar las relaciones taxonómicas entre los taxones.

Exploring putative genetic determinants of inter-individual phenotypic heterogeneity in sickle cell disease: A cross-sectional Jamaican cohort-based study.

Patients with sickle cell disease (SCD) display puzzling inter-individual phenotypic heterogeneity, conceivably related to inherent differences in antioxidant protection, hemoglobin binding, bilirubin catabolism and methyl group handling. Therefore, we explored putative associations between clinically important phenotypic measures and functional polymorphisms within specific candidate genes encoding glutathione S-transferase, haptoglobin, uridine 5'-diphospho-glucuronosyltransferase 1A1, methyl tetrahydrofolate reductase, 5-methyltetrahydrofolate-homocysteine methyltransferase, and cystathionine beta-synthase. Two-hundred and thirty SCD participants (mean age 25.1 ±â€¯2.8) were recruited from Jamaica's Annual Sickle Cell Unit Cohort Review - two-hundred and five had homozygous hemoglobin SS (HbSS) disease, twenty-five had hemoglobin SC (HbSC) disease. Regression analyses revealed some novel genotype-phenotype associations. HbSC participants had significantly lower mean lactate dehydrogenase (p = 0.01) and glutathione (p < 0.001) values than HbSS participants. Glutathione S-transferase P1 (GSTP1) was significantly associated with mean corpuscular hemoglobin concentration using univariate (p = 0.044) and multivariable regression (p = 0.012). 5-methyltetrahydrofolate-homocysteine methyltransferase (MTR) was significantly associated with hemoglobin F % using univariate (p = 0.010) and multivariable regression (p = 0.009). In conclusion, this exploratory cross-sectional study generated novel, useable, and informative genotype-phenotype estimates of association, but larger studies are needed to determine whether these specific variants are related to inter-individual phenotypic variability in SCD.

Low allelic diversity in vaccine candidates genes from different locations sustain hope for Fasciola hepatica immunization.

Fasciola hepatica is a trematode parasite that causes fasciolosis in animals and humans. Fasciolosis is usually treated with triclabendazole, although drug-resistant parasites have been described in several geographical locations. An alternative to drug treatment would be the use of a vaccine, although vaccination studies that have been performed mainly in ruminants over the last 30 years, show high variability in the achieved protection and are not yet ready for commercialisation. Since F. hepatica exhibits a high degree of genomic polymorphism, variation in vaccine efficacy could be attributed, at least partially, to phenotypic differences in vaccine candidate sequences amongst parasites used in the challenge infections. To begin to address this issue, a collection of F. hepatica isolates from geographically dispersed regions, as well as parasites obtained from vaccination trials performed against a field isolate from Uruguay and the experimentally maintained South Gloucester isolate (Ridgeway Research, UK), were compiled to establish a F. hepatica Biobank. These collected isolates were used for the genetic analysis of several vaccine candidates that are important in host-parasite interactions and are the focus of the H2020 PARAGONE vaccine project (https://www.paragoneh2020.eu/), namely FhCL1, FhCL2, FhPrx, FhLAP and FhHDM. Our results show that F. hepatica exhibits a high level of conservation in the sequences encoding each of these proteins. The consequential low variability in these vaccine candidates amongst parasites from different geographical regions reinforces the idea that they would be suitable immunogens against liver fluke isolates worldwide.

Venom Ontogeny in the Mexican Lance-Headed Rattlesnake (Crotalus polystictus).

As trophic adaptations, rattlesnake venoms can vary in composition depending on several intrinsic and extrinsic factors. Ontogenetic changes in venom composition have been documented for numerous species, but little is known of the potential age-related changes in many rattlesnake species found in México. In the current study, venom samples collected from adult and neonate Crotalus polystictus from Estado de México were subjected to enzymatic and electrophoretic analyses, toxicity assays (LD50), and MALDI-TOF mass spectrometry, and a pooled sample of adult venom was analyzed by shotgun proteomics. Electrophoretic profiles of adult males and females were quite similar, and only minor sex-based variation was noted. However, distinct differences were observed between venoms from adult females and their neonate offspring. Several prominent bands, including P-I and P-III snake venom metalloproteinases (SVMPs) and disintegrins (confirmed by MS/MS) were present in adult venoms and absent/greatly reduced in neonate venoms. Age-dependent differences in SVMP, kallikrein-like, phospholipase A2 (PLA2), and L-amino acid oxidase (LAAO) activity levels were confirmed by enzymatic activity assays, and like many other rattlesnake species, venoms from adult snakes have higher SVMP activity than neonate venoms. Conversely, PLA2 activity was approximately 2.5 × greater in venoms from neonates, likely contributing to the increased toxicity (neonate venom LD50 = 4.5 μg/g) towards non-Swiss albino mice when compared to adult venoms (LD50 = 5.5 μg/g). Thrombin-like (TLE) and phosphodiesterase activities did not vary significantly with age. A significant effect of sex (between adult male and adult female venoms) was also observed for SVMP, TLE, and LAAO activities. Analysis of pooled adult venom by LC-MS/MS identified 14 toxin protein families, dominated by bradykinin-inhibitory peptides, SVMPs (P-I, P-II and P-III), disintegrins, PLA2s, C-type-lectins, CRiSPs, serine proteinases, and LAAOs (96% of total venom proteins). Neonate and adult C. polystictus in this population consume almost exclusively mammals, suggesting that age-based differences in composition are related to physical differences in prey (e.g., surface-to-volume ratio differences) rather than taxonomic differences between prey. Venoms from adult C. polystictus fit a Type I pattern (high SVMP activity, lower toxicity), which is characteristic of many larger-bodied rattlesnakes of North America.

A cross-sectional clinic-based study exploring whether variants within the glutathione S-transferase, haptoglobin and uridine 5'-diphospho-glucuronosyltransferase 1A1 genes are associated with interindividual phenotypic variation in sickle cell anaemia in Jamaica.

OBJECTIVES: To explore putative associations between specific variants in either the glutathione S-transferase (GST), haptoglobin (HP) or uridine 5'-diphospho-glucuronosyltransferase 1A1 (UGT1A1) genes and clinically important phenotypes in sickle cell anaemia (HbSS). METHODS: 371 HbSS participants were recruited from the Sickle Cell Clinic of the Sickle Cell Unit at the University of the West Indies, Kingston, Jamaica. Markers within four GST superfamily genes, the HP gene and the UGT1A1 gene were analysed using PCR-based assays. RESULTS: Multivariable regression revealed statistically significant associations between the GSTP1 Ile105Val heterozygote and HbA2 levels (P = .016), HbF percentage (P = .001), MCH concentration (P = .028) and reticulocyte count (P = .032), while the GSTM3 D/D homozygote was significantly associated with HbA2 levels (P = .032). The UGT1A1 (TA)6 /(TA)8 heterozygote showed statistically significant associations with HbA2 levels (P = .019), HbF percentage (P < .001), haemoglobin levels (P = .008), PCV values (P = .007) and RBC counts (P = .041). CONCLUSION: This exploratory cross-sectional study has generated novel and informative genotype-phenotype estimates of association, but larger studies are needed to determine whether these specific variants within the GST, UGT1A1 and HP genes are related to interindividual phenotypic variability in HbSS.

Radiation of the polymorphic Little Devil poison frog (Oophaga sylvatica) in Ecuador.

Some South American poison frogs (Dendrobatidae) are chemically defended and use bright aposematic colors to warn potential predators of their unpalatability. Aposematic signals are often frequency-dependent where individuals deviating from a local model are at a higher risk of predation. However, extreme diversity in the aposematic signal has been documented in poison frogs, especially in Oophaga. Here, we explore the phylogeographic pattern among color-divergent populations of the Little Devil poison frog Oophaga sylvatica by analyzing population structure and genetic differentiation to evaluate which processes could account for color diversity within and among populations. With a combination of PCR amplicons (three mitochondrial and three nuclear markers) and genome-wide markers from a double-digested RAD (ddRAD) approach, we characterized the phylogenetic and genetic structure of 199 individuals from 13 populations (12 monomorphic and 1 polymorphic) across the O. sylvatica distribution. Individuals segregated into two main lineages by their northern or southern latitudinal distribution. A high level of genetic and phenotypic polymorphism within the northern lineage suggests ongoing gene flow. In contrast, low levels of genetic differentiation were detected among the southern lineage populations and support recent range expansions from populations in the northern lineage. We propose that a combination of climatic gradients and structured landscapes might be promoting gene flow and phylogenetic diversification. Alternatively, we cannot rule out that the observed phenotypic and genomic variations are the result of genetic drift on near or neutral alleles in a small number of genes.