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1.
Int J Mol Sci ; 25(15)2024 Aug 03.
Article de Anglais | MEDLINE | ID: mdl-39126048

RÉSUMÉ

Triterpene acids are a class of pentacyclic natural carboxylic compounds endowed with a variety of biological activities including antitumor, antimicrobial, and hepatoprotective effects. In this work, several oleanolic acid derivatives were synthesized by structurally modifying them on the C-3 position. All synthesized derivatives were evaluated for possible antibacterial and antiviral activity, and among all the epimers, 6 and 7 demonstrated the best biological activities. Zone-of-inhibition analyses were conducted against two strains, E. coli as a Gram-negative and S. aureus as a Gram-positive model. Subsequently, experiments were performed using the microdilution method to determine the minimum inhibitory concentration (MIC). The results showed that only the derivative with reduced hydrogen bonding ability on ring A possesses remarkable activity toward E. coli. The conversion from acid to methyl ester implies a loss of activity, probably due to a reduced affinity with the bacterial membrane. Before the antiviral activity, the cytotoxicity of triterpenes was evaluated through a 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT) assay. Samples 6 and 7 showed less than 50% cytotoxicity at 0.625 and 1 mg/mL, respectively. The antiviral activity against SARS-CoV-2 and PV-1 did not indicate that triterpene acids had any inhibitory capacity in the sub-toxic concentration range.


Sujet(s)
Antibactériens , Antiviraux , Escherichia coli , Tests de sensibilité microbienne , Acide oléanolique , Acide oléanolique/composition chimique , Acide oléanolique/pharmacologie , Acide oléanolique/analogues et dérivés , Antiviraux/pharmacologie , Antiviraux/composition chimique , Antiviraux/synthèse chimique , Antibactériens/pharmacologie , Antibactériens/composition chimique , Antibactériens/synthèse chimique , Escherichia coli/effets des médicaments et des substances chimiques , Escherichia coli/croissance et développement , Humains , Staphylococcus aureus/effets des médicaments et des substances chimiques , SARS-CoV-2/effets des médicaments et des substances chimiques , Animaux , Relation structure-activité
2.
Nat Commun ; 15(1): 7080, 2024 Aug 17.
Article de Anglais | MEDLINE | ID: mdl-39152141

RÉSUMÉ

C4'-modified nucleoside analogues continue to attract global attention for their use in antiviral drug development and oligonucleotide-based therapeutics. However, current approaches to C4'-modified nucleoside analogues still involve lengthy (9-16 steps), non-modular routes that are unamenable to library synthesis. Towards addressing the challenges associated with their syntheses, we report a modular 5-step process to a diverse collection of C4'-modified nucleoside analogues through a sequence of intramolecular trans-acetalizations of readily assembled polyhydroxylated frameworks. Overall, the 2-3 fold reduction in step-count compares favorably to even recently reported biocatalytic approaches and should ultimately enable new opportunities in drug design around this popular chemotype.


Sujet(s)
Nucléosides , Nucléosides/composition chimique , Nucléosides/synthèse chimique , Stéréoisomérie , Antiviraux/synthèse chimique , Antiviraux/composition chimique , Acétals/composition chimique , Conception de médicament
3.
Eur J Med Chem ; 276: 116658, 2024 Oct 05.
Article de Anglais | MEDLINE | ID: mdl-39088999

RÉSUMÉ

The enterovirus is a genus of single-stranded, highly diverse positive-sense RNA viruses, including Human Enterovirus A-D and Human Rhinovirus A-C species. They are responsible for numerous diseases and some infections can progress to life-threatening complications, particularly in children or immunocompromised patients. To date, there is no treatment against enteroviruses on the market, except for polioviruses (vaccine) and EV-A71 (vaccine in China). Following a decrease in enterovirus infections during and shortly after the (SARS-Cov2) lockdown, enterovirus outbreaks were once again detected, notably in young children. This reemergence highlights on the need to develop broad-spectrum treatment against enteroviruses. Over the last year, our research team has identified a new class of small-molecule inhibitors showing anti-EV activity. Targeting the well-known hydrophobic pocket in the viral capsid, these compounds show micromolar activity against EV-A71 and a high selectivity index (SI) (5h: EC50, MRC-5 = 0.57 µM, CC50, MRC-5 >20 µM, SI > 35; EC50, RD = 4.38 µM, CC50, RD > 40 µM, SI > 9; 6c: EC50, MRC-5 = 0.29 µM, CC50, MRC-5 >20 µM, SI > 69; EC50, RD = 1.66 µM, CC50, RD > 40 µM, SI > 24; Reference: Vapendavir EC50, MRC-5 = 0.36 µM, CC50, MRC-5 > 20 µM, EC50, RD = 0.53 µM, CC50, RD > 40 µM, SI > 63). The binding mode of these compounds in complex with enterovirus capsids was analyzed and showed a series of conserved interactions. Consequently, 6c and its derivatives are promising candidates for the treatment of enterovirus infections.


Sujet(s)
Antiviraux , Capside , Entérovirus humain A , Antiviraux/pharmacologie , Antiviraux/composition chimique , Antiviraux/synthèse chimique , Humains , Entérovirus humain A/effets des médicaments et des substances chimiques , Capside/effets des médicaments et des substances chimiques , Capside/métabolisme , Relation structure-activité , Protéines de capside/antagonistes et inhibiteurs , Protéines de capside/métabolisme , Protéines de capside/composition chimique , Structure moléculaire , Tests de sensibilité microbienne , Relation dose-effet des médicaments
4.
Molecules ; 29(15)2024 Jul 30.
Article de Anglais | MEDLINE | ID: mdl-39125014

RÉSUMÉ

The data on the synthesis of N-aminomorpholine hydrazones are presented. It is shown that the interaction of N-aminomorpholine with functionally substituted benzaldehydes and 4-pyridinaldehyde in isopropyl alcohol leads to the formation of corresponding hydrazones. The structure of the synthesized compounds was studied by 1H and 13C NMR spectroscopy methods, including the COSY (1H-1H), HMQC (1H-13C) and HMBC (1H-13C) methodologies. The values of chemical shifts, multiplicity, and integral intensity of 1H and 13C signals in one-dimensional NMR spectra were determined. The COSY (1H-1H), HMQC (1H-13C), and HMBC (1H-13C) results revealed homo- and heteronuclear interactions, confirming the structure of the studied compounds. The antiviral, cytotoxic, and antimicrobial activity of some synthesized hydrazones were investigated. It is shown that 2-((morpholinoimino)methyl)benzoic acid has a pronounced viral inhibitory property, comparable in its activity to commercial drugs Tamiflu and Remantadine. A docking study was performed using the influenza virus protein models (1930 Swine H1 Hemagglutinin and Neuraminidase of 1918 H1N1 strain). The potential binding sites that are complementary with 2-((morpholinoimino)methyl)benzoic acid were found.


Sujet(s)
Hydrazones , Simulation de docking moléculaire , Morpholines , Hydrazones/composition chimique , Hydrazones/pharmacologie , Hydrazones/synthèse chimique , Morpholines/composition chimique , Morpholines/pharmacologie , Morpholines/synthèse chimique , Humains , Antiviraux/pharmacologie , Antiviraux/composition chimique , Antiviraux/synthèse chimique , Animaux , Relation structure-activité , Tests de sensibilité microbienne , Structure moléculaire
5.
Langmuir ; 40(29): 14838-14846, 2024 Jul 23.
Article de Anglais | MEDLINE | ID: mdl-38978473

RÉSUMÉ

The impact of the reaction environment on the formation of the polycrystalline layer and its biomedical (antimicrobial) applications were analyzed in detail. Copper oxide layers were synthesized using an electrodeposition technique, with varying additives influencing the morphology, thickness, and chemical composition. Scanning electron microscopy (SEM) images confirmed the successful formation of polyhedral structures. Unmodified samples (CuL) crystallized as a mixture of copper oxide (I) and (II), with a thickness of approximately 1.74 µm. The inclusion of the nonconductive polymer polyvinylpyrrolidone (PVP) during synthesis led to a regular and compact CuO-rich structure (CuL-PVP). Conversely, adding glucose resulted in forming a Cu2O-rich nanostructured layer (CuL-D(+)G). Both additives significantly reduced the sample thickness to 617 nm for CuL-PVP and 560 nm for CuL-D(+)G. The effectiveness of the synthesized copper oxide layers was demonstrated in their ability to significantly reduce the T4 phage titer by approximately 2.5-3 log. Notably, CuL-PVP and CuL-D(+)G showed a more substantial reduction in the MS2 phage titer, achieving about a 5-log decrease. In terms of antibacterial activity, CuL and CuL-PVP exhibited moderate efficacy against Escherichia coli, whereas CuL-D(+)G reduced the E. coli titer to undetectable levels. All samples induced similar reductions in Staphylococcus aureus titer. The study revealed differential susceptibilities, with Gram-negative bacteria being more vulnerable to CuL-D(+)G due to its unique composition and morphology. The antimicrobial properties were attributed to the redox cycling of Cu ions, which generate ROS, and the mechanical damage caused by nanostructured surfaces. A crucial finding was the impact of surface composition rather than surface morphology on antimicrobial efficacy. Samples with a dominant Cu2O composition exhibited potent antibacterial and antiviral properties, whereas CuO-rich materials showed predominantly enhanced antiviral activity. This research highlights the significance of phase composition in determining the antimicrobial properties of copper oxide layers synthesized through electrodeposition.


Sujet(s)
Antibactériens , Antiviraux , Cuivre , Cuivre/composition chimique , Cuivre/pharmacologie , Antibactériens/pharmacologie , Antibactériens/composition chimique , Antibactériens/synthèse chimique , Antiviraux/pharmacologie , Antiviraux/composition chimique , Antiviraux/synthèse chimique , Escherichia coli/effets des médicaments et des substances chimiques , Tests de sensibilité microbienne , Nanostructures/composition chimique , Staphylococcus aureus/effets des médicaments et des substances chimiques , Techniques électrochimiques
6.
ACS Macro Lett ; 13(7): 874-881, 2024 Jul 16.
Article de Anglais | MEDLINE | ID: mdl-38949618

RÉSUMÉ

The frequent mutations of influenza A virus (IAV) have led to an urgent need for the development of innovative antiviral drugs. Glycopolymers offer significant advantages in biomedical applications owing to their biocompatibility and structural diversity. However, the primary challenge lies in the design and synthesis of well-defined glycopolymers to precisely control their biological functionalities. In this study, functional glycopolymers with sulfated fucose and 6'-sialyllactose were successfully synthesized through ring-opening metathesis polymerization and a postmodification strategy. The optimized heteropolymer exhibited simultaneous targeting of hemagglutinin and neuraminidase on the surface of IAV, as evidenced by MU-NANA assay and hemagglutination inhibition data. Antiviral experiments demonstrated that the glycopolymer displayed broad and efficient inhibitory activity against wild-type and mutant strains of H1N1 and H3N2 subtypes in vitro, thereby establishing its potential as a dual-targeted inhibitor for combating IAV resistance.


Sujet(s)
Antiviraux , Fucose , Sous-type H1N1 du virus de la grippe A , Lactose , Antiviraux/pharmacologie , Antiviraux/composition chimique , Antiviraux/synthèse chimique , Lactose/analogues et dérivés , Lactose/composition chimique , Lactose/pharmacologie , Fucose/composition chimique , Fucose/analogues et dérivés , Fucose/pharmacologie , Sous-type H1N1 du virus de la grippe A/effets des médicaments et des substances chimiques , Sous-type H3N2 du virus de la grippe A/effets des médicaments et des substances chimiques , Résistance virale aux médicaments/effets des médicaments et des substances chimiques , Humains , Sialidase/antagonistes et inhibiteurs , Sialidase/métabolisme , Virus de la grippe A/effets des médicaments et des substances chimiques , Cellules rénales canines Madin-Darby , Animaux , Chiens , Polymères/pharmacologie , Polymères/composition chimique
7.
Biomolecules ; 14(7)2024 Jun 24.
Article de Anglais | MEDLINE | ID: mdl-39062460

RÉSUMÉ

1,2,4-Triazole derivatives have a wide range of biological activities. The most well-known drug that contains 1,2,4-triazole as part of its structure is the nucleoside analogue ribavirin, an antiviral drug. Finding new nucleosides based on 1,2,4-triazole is a topical task. The aim of this study was to synthesize ribosides and deoxyribosides of 1,2,4-triazole-3-thione derivatives and test their antiviral activity against herpes simplex viruses. Three compounds from a series of synthesized mono- and disubstituted 1,2,4-triazole-3-thione derivatives were found to be substrates for E. coli purine nucleoside phosphorylase. Of six prepared nucleosides, the riboside and deoxyriboside of 3-phenacylthio-1,2,4-triazole were obtained at good yields. The yields of the disubstituted 1,2,4-triazol-3-thiones were low due to the effect of bulky substituents at the C3 and C5 positions on the selectivity of enzymatic glycosylation for one particular nitrogen atom in the triazole ring. The results of cytotoxic and antiviral studies on acyclovir-sensitive wild-type strain HSV-1/L2(TK+) and acyclovir-resistant strain (HSV-1/L2/RACV) in Vero E6 cell culture showed that the incorporation of a thiobutyl substituent into the C5 position of 3-phenyl-1,2,4-triazole results in a significant increase in the cytotoxicity of the base and antiviral activity. The highest antiviral activity was observed in the 3-phenacylthio-1-(ß-D-ribofuranosyl)-1,2,4-triazole and 5-butylthio-1-(2-deoxy-ß-D-ribofuranosyl)-3-phenyl-1,2,4-triazole nucleosides, with their selectivity indexes being significantly higher than that of ribavirin. It was also found that with the increasing lipophilicity of the nucleosides, the activity and toxicity of the tested compounds increased.


Sujet(s)
Antiviraux , Escherichia coli , Nucléosides , Purine nucleoside phosphorylase , Triazoles , Triazoles/composition chimique , Triazoles/pharmacologie , Triazoles/synthèse chimique , Purine nucleoside phosphorylase/métabolisme , Purine nucleoside phosphorylase/antagonistes et inhibiteurs , Antiviraux/pharmacologie , Antiviraux/synthèse chimique , Antiviraux/composition chimique , Escherichia coli/effets des médicaments et des substances chimiques , Escherichia coli/enzymologie , Nucléosides/composition chimique , Nucléosides/synthèse chimique , Nucléosides/pharmacologie , Thiones/composition chimique , Thiones/pharmacologie , Thiones/synthèse chimique , Animaux , Chlorocebus aethiops , Cellules Vero
8.
Bioorg Chem ; 150: 107602, 2024 Sep.
Article de Anglais | MEDLINE | ID: mdl-38959647

RÉSUMÉ

The binding affinities and interactions between eight drug candidates, both commercially available (candesartan; losartan; losartan carboxylic acid; nirmatrelvir; telmisartan) and newly synthesized benzimidazole-N-biphenyltetrazole (ACC519T), benzimidazole bis-N,N'-biphenyltetrazole (ACC519T(2) and 4-butyl-N,N-bis([2-(2H-tetrazol-5-yl)biphenyl-4-yl]) methyl (BV6), and the active site of angiotensin-converting enzyme-2 (ACE2) were evaluated for their potential as inhibitors against SARS-CoV-2 and regulators of ACE2 function through Density Functional Theory methodology and enzyme activity assays, respectively. Notably, telmisartan and ACC519T(2) exhibited pronounced binding affinities, forming strong interactions with ACE2's active center, favorably accepting proton from the guanidinium group of arginine273. The ordering of candidates by binding affinity and reactivity descriptors, emerged as telmisartan > ACC519T(2) > candesartan > ACC519T > losartan carboxylic acid > BV6 > losartan > nirmatrelvir. Proton transfers among the active center amino acids revealed their interconnectedness, highlighting a chain-like proton transfer involving tyrosine, phenylalanine, and histidine. Furthermore, these candidates revealed their potential antiviral abilities by influencing proton transfer within the ACE2 active site. Furthermore, through an in vitro pharmacological assays we determined that candesartan and the BV6 derivative, 4-butyl-N,N0-bis[20-2Htetrazol-5-yl)bipheyl-4-yl]methyl)imidazolium bromide (BV6(K+)2) also contain the capacity to increase ACE2 functional activity. This comprehensive analysis collectively underscores the promise of these compounds as potential therapeutic agents against SARS-CoV-2 by targeting crucial protein interactions.


Sujet(s)
Antagonistes des récepteurs aux angiotensines , Angiotensin-converting enzyme 2 , Théorie de la fonctionnelle de la densité , SARS-CoV-2 , Angiotensin-converting enzyme 2/métabolisme , Angiotensin-converting enzyme 2/composition chimique , SARS-CoV-2/effets des médicaments et des substances chimiques , SARS-CoV-2/enzymologie , Humains , Antagonistes des récepteurs aux angiotensines/pharmacologie , Antagonistes des récepteurs aux angiotensines/composition chimique , Dérivés du biphényle/pharmacologie , Dérivés du biphényle/composition chimique , Antiviraux/pharmacologie , Antiviraux/composition chimique , Antiviraux/synthèse chimique , COVID-19/virologie , Relation structure-activité , Structure moléculaire , Benzimidazoles/pharmacologie , Benzimidazoles/composition chimique , Tétrazoles/pharmacologie , Tétrazoles/composition chimique , Tétrazoles/synthèse chimique , Inhibiteurs de l'enzyme de conversion de l'angiotensine/pharmacologie , Inhibiteurs de l'enzyme de conversion de l'angiotensine/composition chimique , Inhibiteurs de l'enzyme de conversion de l'angiotensine/métabolisme , Traitements médicamenteux de la COVID-19
9.
Drug Dev Res ; 85(5): e22237, 2024 Aug.
Article de Anglais | MEDLINE | ID: mdl-39032059

RÉSUMÉ

The global prevalence of RNA virus infections has presented significant challenges to public health in recent years, necessitating the expansion of its alternative therapeutic library. Due to its evolutional conservation, RNA-dependent RNA polymerase (RdRp) has emerged as a potential target for broad-spectrum antiviral nucleoside analogues. However, after over half a century of structural modification, exploring unclaimed chemical space using frequently-used structural substitution methods to design new nucleoside analogues is challenging. In this study, we explore the use of the "ring-opening" strategy to design new base mimics, thereby using these base mimics to design new nucleoside analogues with broad-spectrum antiviral activities. A total of 29 compounds were synthesized. Their activity against viral RdRp was initially screened using an influenza A virus RdRp high-throughput screening model. Then, the antiviral activity of 38a was verified against influenza virus strain A/PR/8/34 (H1N1), demonstrating a 50% inhibitory concentration (IC50) value of 9.95 µM, which was superior to that of ribavirin (the positive control, IC50 = 11.43 µM). Moreover, 38a also has inhibitory activity against coronavirus 229E with an IC50 of 30.82 µM. In addition, compounds 42 and 46f exhibit an 82% inhibition rate against vesicular stomatitis virus at a concentration of 20 µM and hardly induce cytotoxicity in host cells. This work demonstrates the feasibility of designing nucleoside analogues with "ring-opening" bases and suggests the "ring-opening" nucleosides may have greater polarity, and designing prodrugs is an important aspect of optimizing their antiviral activity. Future research should focus on enhancing the conformational restriction of open-loop bases to mimic Watson-Crick base pairing better and improve antiviral activity.


Sujet(s)
Antiviraux , Conception de médicament , Nucléosides , RNA replicase , Antiviraux/pharmacologie , Antiviraux/composition chimique , Antiviraux/synthèse chimique , Nucléosides/composition chimique , Nucléosides/pharmacologie , RNA replicase/antagonistes et inhibiteurs , Sous-type H1N1 du virus de la grippe A/effets des médicaments et des substances chimiques , Humains , Animaux , Cellules rénales canines Madin-Darby , Chiens , Relation structure-activité
10.
J Med Chem ; 67(14): 11937-11956, 2024 Jul 25.
Article de Anglais | MEDLINE | ID: mdl-38953866

RÉSUMÉ

Zoonotic coronaviruses are known to produce severe infections in humans and have been the cause of significant morbidity and mortality worldwide. SARS-CoV-2 was the largest and latest contributor of fatal cases, even though MERS-CoV has the highest case-fatality ratio among zoonotic coronaviruses. These infections pose a high risk to public health worldwide warranting efforts for the expeditious discovery of antivirals. Hence, we hereby describe a novel series of inhibitors of coronavirus 3CLpro embodying an N-substituted 2-pyrrolidone scaffold envisaged to exploit favorable interactions with the S3-S4 subsites and connected to an invariant Leu-Gln P2-P1 recognition element. Several inhibitors showed nanomolar antiviral activity in enzyme and cell-based assays, with no significant cytotoxicity. High-resolution crystal structures of inhibitors bound to the 3CLpro were determined to probe and identify the molecular determinants associated with binding, to inform the structure-guided optimization of the inhibitors, and to confirm the mechanism of action of the inhibitors.


Sujet(s)
Antiviraux , Protéases 3C des coronavirus , Conception de médicament , SARS-CoV-2 , Antiviraux/pharmacologie , Antiviraux/composition chimique , Antiviraux/synthèse chimique , Humains , SARS-CoV-2/effets des médicaments et des substances chimiques , Cristallographie aux rayons X , Protéases 3C des coronavirus/antagonistes et inhibiteurs , Protéases 3C des coronavirus/métabolisme , Pyrrolidones/pharmacologie , Pyrrolidones/composition chimique , Relation structure-activité , Animaux , Modèles moléculaires
11.
J Med Chem ; 67(14): 11885-11916, 2024 Jul 25.
Article de Anglais | MEDLINE | ID: mdl-38995734

RÉSUMÉ

Herein, we report the synthesis and biological evaluation of a novel series of heparinoid amphiphiles as inhibitors of heparanase and SARS-CoV-2. By employing a tailor-made synthetic strategy, a library of highly sulfated homo-oligosaccharides bearing d-glucose or a C5-epimer (i.e., l-idose or l-iduronic acid) conjugated with various lipophilic groups was synthesized and investigated for antiviral activity. Sulfated higher oligosaccharides of d-glucose or l-idose with lipophilic aglycones displayed potent anti-SARS-CoV-2 and antiheparanse activity, similar to or better than pixatimod (PG545), and were more potent than their isosteric l-iduronic acid congeners. Lipophilic groups such as cholestanol and C18-aliphatic substitution are more advantageous than functional group appended lipophilic moieties. These findings confirm that fine-tuning of higher oligosaccharides, degree of sulfation, and lipophilic groups can yield compounds with potent anti-SARS-CoV-2 activity.


Sujet(s)
Antiviraux , SARS-CoV-2 , Antiviraux/pharmacologie , Antiviraux/composition chimique , Antiviraux/synthèse chimique , SARS-CoV-2/effets des médicaments et des substances chimiques , Humains , Oligosaccharides/pharmacologie , Oligosaccharides/synthèse chimique , Oligosaccharides/composition chimique , Traitements médicamenteux de la COVID-19 , Animaux , Cellules Vero , Chlorocebus aethiops , Relation structure-activité , COVID-19/virologie , Glucuronidase , Saponines
12.
J Med Chem ; 67(14): 12261-12313, 2024 Jul 25.
Article de Anglais | MEDLINE | ID: mdl-38959455

RÉSUMÉ

The pyrazolo[1,5-a]pyrimidine scaffold is a promising scaffold to develop potent and selective CSNK2 inhibitors with antiviral activity against ß-coronaviruses. Herein, we describe the discovery of a 1,2,4-triazole group to substitute a key amide group for CSNK2 binding present in many potent pyrazolo[1,5-a]pyrimidine inhibitors. Crystallographic evidence demonstrates that the 1,2,4-triazole replaces the amide in forming key hydrogen bonds with Lys68 and a water molecule buried in the ATP-binding pocket. This isosteric replacement improves potency and metabolic stability at a cost of solubility. Optimization for potency, solubility, and metabolic stability led to the discovery of the potent and selective CSNK2 inhibitor 53. Despite excellent in vitro metabolic stability, rapid decline in plasma concentration of 53 in vivo was observed and may be attributed to lung accumulation, although in vivo pharmacological effect was not observed. Further optimization of this novel chemotype may validate CSNK2 as an antiviral target in vivo.


Sujet(s)
Antiviraux , Casein Kinase II , Pyrimidines , Triazoles , Réplication virale , Triazoles/pharmacologie , Triazoles/composition chimique , Triazoles/synthèse chimique , Pyrimidines/pharmacologie , Pyrimidines/composition chimique , Pyrimidines/synthèse chimique , Antiviraux/pharmacologie , Antiviraux/composition chimique , Antiviraux/synthèse chimique , Animaux , Humains , Réplication virale/effets des médicaments et des substances chimiques , Casein Kinase II/antagonistes et inhibiteurs , Casein Kinase II/métabolisme , Pyrazoles/pharmacologie , Pyrazoles/composition chimique , Pyrazoles/synthèse chimique , Inhibiteurs de protéines kinases/pharmacologie , Inhibiteurs de protéines kinases/composition chimique , Inhibiteurs de protéines kinases/synthèse chimique , Amides/composition chimique , Amides/pharmacologie , Amides/synthèse chimique , Relation structure-activité , Souris , Rats , SARS-CoV-2/effets des médicaments et des substances chimiques , Découverte de médicament , Mâle
13.
J Am Chem Soc ; 146(31): 21428-21441, 2024 Aug 07.
Article de Anglais | MEDLINE | ID: mdl-39051926

RÉSUMÉ

A Minisci-type borylation of unprotected adenosine, adenine nucleotide, and adenosine analogues was successfully achieved through photocatalysis or thermal activation. Despite the challenges posed by the presence of two potential reactive sites (C2 and C8) in the purine motif, the unique nucleophilic amine-ligated boryl radicals effortlessly achieved excellent C2 site selectivity and simultaneously avoided the formation of multifunctionalized products. This protocol proved effective for the late-stage borylation of some important biomolecules as well as a few antiviral and antitumor drug molecules, such as AMP, cAMP, Vidarabine, Cordycepin, Tenofovir, Adefovir, GS-441524, etc. Theoretical calculations shed light on the site selectivity, revealing that the free energy barriers for the C2-Minisci addition are further lowered through the chelation of additive Mg2+ to N3 and furyl oxygen. This phenomenon has been confirmed by an IGMH analysis. Preliminary antitumor evaluation, derivation of the C2-borylated adenosine to other analogues with high-value functionalities, along with the CuAAC click reactions, suggest the potential application of this methodology in drug molecular optimization studies and chemical biology.


Sujet(s)
Adénine , Adénosine , Adénosine/composition chimique , Adénosine/analogues et dérivés , Adénine/composition chimique , Adénine/analogues et dérivés , Antinéoplasiques/composition chimique , Antinéoplasiques/pharmacologie , Antinéoplasiques/synthèse chimique , Humains , Stéréoisomérie , Structure moléculaire , Antiviraux/composition chimique , Antiviraux/synthèse chimique
14.
J Med Chem ; 67(15): 12760-12783, 2024 Aug 08.
Article de Anglais | MEDLINE | ID: mdl-39072488

RÉSUMÉ

SARS-CoV-2 has still been threatening global public health with its emerging variants. Our previous work reported lead compound JZD-07 that displayed good 3CLpro inhibitory activity. Here, an in-depth structural optimization for JZD-07 was launched to obtain more desirable drug candidates for the therapy of SARS-CoV-2 infection, in which 54 novel derivatives were designed and synthesized by a structure-based drug design strategy. Among them, 24 compounds show significantly enhanced 3CLpro inhibitory potencies with IC50 values less than 100 nM, and 11 compounds dose-dependently inhibit the replication of the SARS-CoV-2 delta variant. In particular, compound 49 has the most desirable antiviral activity with EC50 of 0.272 ± 0.013 µM against the delta variant, which was more than 20 times stronger than JZD-07. Oral administration of 49 could significantly reduce the lung viral copies of mice, exhibiting a more favorable therapeutic potential. Overall, this investigation presents a promising drug candidate for further development to treat SARS-CoV-2 infection.


Sujet(s)
Antiviraux , Traitements médicamenteux de la COVID-19 , Protéases 3C des coronavirus , SARS-CoV-2 , SARS-CoV-2/effets des médicaments et des substances chimiques , Antiviraux/pharmacologie , Antiviraux/composition chimique , Antiviraux/synthèse chimique , Animaux , Protéases 3C des coronavirus/antagonistes et inhibiteurs , Protéases 3C des coronavirus/métabolisme , Souris , Humains , Relation structure-activité , Découverte de médicament , Réplication virale/effets des médicaments et des substances chimiques , Cellules Vero , Chlorocebus aethiops , Conception de médicament , Bibliothèques de petites molécules/pharmacologie , Bibliothèques de petites molécules/composition chimique , Bibliothèques de petites molécules/synthèse chimique , Simulation de docking moléculaire
15.
Eur J Med Chem ; 276: 116671, 2024 Oct 05.
Article de Anglais | MEDLINE | ID: mdl-39004019

RÉSUMÉ

COVID-19 caused major worldwide problems. The spread of variants and limited treatment encouraged the design of novel anti-SARS-CoV-2 compounds. A series of compounds RH1-23 were designed to dually target RNA-dependent RNA polymerase (RdRp) and transmembrane serine protease 2 (TMPRSS2). Compared to remdesivir, in vitro screening indicated the highest selectivity and potent activity of RH11-13 with half maximum inhibitory concentration (IC50) 3.9, 5.7, and 19.72 nM, respectively. RH11-12 showed superior inhibition activity against TMPRSS2 and RdRP with IC50 (1.7 and 4.2), and (6.1 and 4.42) nM, respectively. WaterMap analysis and molecular dynamics studies demonstrated the superior enzyme binding activity of RH11 and RH12. On Vero-E6 cells, RH11 and RH12 significantly inhibited the viral replication with 66 % and 63.2 %, and viral adsorption with 44 % and 65 %, alongside virucidal effect with 51.40 % and 90.5 %, respectively. Furthermore, the potent activity of RH12 was tested on TMPRSS2-expressing cells (Calu-3) compared to camostat. RH12 exhibited selectivity index (26.05) similar to camostat (28.01) and comparable to its SI on Vero-E6 cells (22.6). RH12 demonstrated also a significant inhibition of the viral adsorption on Calu-3 cells with 60 % inhibition at 30 nM. The designed compounds exhibited good physiochemical properties. These findings indicate a broad-spectrum antiviral efficacy of the designed compounds, particularly RH12, with a promise for further development.


Sujet(s)
Antiviraux , SARS-CoV-2 , Serine endopeptidases , Serine endopeptidases/métabolisme , Humains , SARS-CoV-2/effets des médicaments et des substances chimiques , SARS-CoV-2/enzymologie , Antiviraux/pharmacologie , Antiviraux/composition chimique , Antiviraux/synthèse chimique , Chlorocebus aethiops , Animaux , Cellules Vero , Réplication virale/effets des médicaments et des substances chimiques , Traitements médicamenteux de la COVID-19 , Relation structure-activité , RNA replicase/antagonistes et inhibiteurs , RNA replicase/métabolisme , Relation dose-effet des médicaments , Structure moléculaire , Simulation de dynamique moléculaire
16.
Eur J Med Chem ; 276: 116690, 2024 Oct 05.
Article de Anglais | MEDLINE | ID: mdl-39032404

RÉSUMÉ

Small molecules that exhibit broad-spectrum enteroviral inhibitory activity by targeting viral replication proteins are highly desired in antiviral drug discovery studies. To discover new human rhinovirus (hRV) inhibitors, we performed a high-throughput screening of 100,000 compounds from the Korea Chemical Bank library. This search led to identification of two phosphatidylinositol-4-kinase IIIß (PI4KIIIß) inhibitors having the pyrazolo-pyrimidine core structure, which display moderate anti-rhinoviral activity along with mild cytotoxicity. The results of a study aimed at optimizing the activity of the hit compounds showed that the pyrazolo-pyrimidine derivative 6f exhibits the highest activity (EC50 = 0.044, 0.066, and 0.083 µM for hRV-B14, hRV-A16, and hRV-A21, respectively) and moderate toxicity (CC50 = 31.38 µM). Furthermore, 6f has broad-spectrum activities against various hRVs, coxsackieviruses and other enteroviruses, such as EV-A71, EV-D68. An assessment of kinase inhibition potencies demonstrated that 6f possesses a high and selective kinase inhibition activity against PI4KIIIß (IC50 value of 0.057 µM) and not against PI4KIIIα (>10 µM). Moreover, 6f exhibits modest hepatic stability (46.9 and 55.3 % remaining after 30 min in mouse and human liver microsomes, respectively). Finally, an in vivo study demonstrated that 6f possesses a desirable pharmacokinetic profile reflected in low systemic clearance (0.48 L∙h-1 kg-1) and modest oral bioavailability (52.4 %). Hence, 6f (KR-26549) appears to be an ideal lead for the development of new antiviral drugs.


Sujet(s)
Antiviraux , Pyrimidines , Rhinovirus , Réplication virale , Humains , Rhinovirus/effets des médicaments et des substances chimiques , Antiviraux/pharmacologie , Antiviraux/composition chimique , Antiviraux/synthèse chimique , Réplication virale/effets des médicaments et des substances chimiques , Pyrimidines/pharmacologie , Pyrimidines/composition chimique , Pyrimidines/synthèse chimique , Animaux , Relation structure-activité , Structure moléculaire , Pyrazoles/pharmacologie , Pyrazoles/composition chimique , Pyrazoles/synthèse chimique , Souris , Relation dose-effet des médicaments , Inhibiteurs de protéines kinases/pharmacologie , Inhibiteurs de protéines kinases/composition chimique , Inhibiteurs de protéines kinases/synthèse chimique , Tests de sensibilité microbienne , Phosphotransferases (Alcohol Group Acceptor)
17.
Eur J Med Chem ; 276: 116707, 2024 Oct 05.
Article de Anglais | MEDLINE | ID: mdl-39068863

RÉSUMÉ

The 3CL protease (3CLpro, Mpro) plays a key role in the replication of the SARS-CoV-2 and was validated as therapeutic target by the development and approval of specific antiviral drugs (nirmatrelvir, ensitrelvir), inhibitors of this protease. Moreover, its high conservation within the coronavirus family renders it an attractive therapeutic target for the development of anti-coronavirus compounds with broad spectrum activity to control COVID-19 and future coronavirus diseases. Here we report on the design, synthesis and structure-activity relationships of a new series of small covalent reversible inhibitors of the SARS-CoV-2 3CLpro. As elucidated thanks to the X-Ray structure of some inhibitors with the 3CLpro, the mode of inhibition involves acylation of the thiol of the catalytic cysteine. The synthesis of 60 analogs led to the identification of compound 56 that inhibits the SARS-CoV-2 3CLpro with high potency (IC50 = 70 nM) and displays antiviral activity in cells (EC50 = 3.1 µM). Notably, compound 56 inhibits the 3CLpro of three other human coronaviruses and exhibit a good selectivity against two human cysteine proteases. These results demonstrate the potential of this electrophilic N-acylbenzimidazole series as a basis for further optimization.


Sujet(s)
Antiviraux , Benzimidazoles , Protéases 3C des coronavirus , SARS-CoV-2 , Protéases 3C des coronavirus/antagonistes et inhibiteurs , Protéases 3C des coronavirus/métabolisme , Antiviraux/pharmacologie , Antiviraux/composition chimique , Antiviraux/synthèse chimique , Relation structure-activité , SARS-CoV-2/effets des médicaments et des substances chimiques , SARS-CoV-2/enzymologie , Humains , Benzimidazoles/pharmacologie , Benzimidazoles/composition chimique , Benzimidazoles/synthèse chimique , Cysteine endopeptidases/métabolisme , Acylation , Cystéine/composition chimique , Cystéine/pharmacologie , Structure moléculaire , Relation dose-effet des médicaments , Inhibiteurs de protéases/pharmacologie , Inhibiteurs de protéases/synthèse chimique , Inhibiteurs de protéases/composition chimique , Modèles moléculaires , Conception de médicament , Cristallographie aux rayons X
18.
Eur J Med Chem ; 276: 116639, 2024 Oct 05.
Article de Anglais | MEDLINE | ID: mdl-38964259

RÉSUMÉ

Since influenza virus RNA polymerase subunit PAN is a dinuclear Mn2+ dependent endonuclease, metal-binding pharmacophores (MBPs) with Mn2+ coordination has been elucidated as a promising strategy to develop PAN inhibitors for influenza treatment. However, few attentions have been paid to the relationship between the optimal arrangement of the donor atoms in MBPs and anti-influenza A virus (IAV) efficacy. Given that, the privileged hydroxypyridinones fusing a seven-membered lactam ring with diverse side chains, chiral centers or cyclic systems were designed and synthesized. A structure-activity relationship study resulted in a hit compound 16l (IC50 = 2.868 ± 0.063 µM against IAV polymerase), the seven-membered lactam ring of which was fused a pyrrolidine ring. Further optimization of the hydrophobic binding groups on 16l afforded a lead compound (R, S)-16s, which exhibited a 64-fold more potent inhibitory activity (IC50 = 0.045 ± 0.002 µM) toward IAV polymerase. Moreover, (R, S)-16s demonstrated a potent anti-IAV efficacy (EC50 = 0.134 ± 0.093 µM) and weak cytotoxicity (CC50 = 15.35 µM), indicating the high selectivity of (R, S)-16s. Although the lead compound (R, S)-16s exhibited a little weaker activity than baloxavir, these findings illustrated the utility of a metal coordination-based strategy in generating novel MBPs with potent anti-influenza activity.


Sujet(s)
Antiviraux , Conception de médicament , Endonucleases , Virus de la grippe A , Lactames , Pyridones , Antiviraux/pharmacologie , Antiviraux/composition chimique , Antiviraux/synthèse chimique , Lactames/composition chimique , Lactames/pharmacologie , Lactames/synthèse chimique , Relation structure-activité , Endonucleases/antagonistes et inhibiteurs , Endonucleases/métabolisme , Pyridones/pharmacologie , Pyridones/composition chimique , Pyridones/synthèse chimique , Virus de la grippe A/effets des médicaments et des substances chimiques , Structure moléculaire , Antienzymes/pharmacologie , Antienzymes/composition chimique , Antienzymes/synthèse chimique , Relation dose-effet des médicaments , Humains , Tests de sensibilité microbienne , Chiens , Cellules rénales canines Madin-Darby , Animaux
19.
Eur J Med Chem ; 276: 116633, 2024 Oct 05.
Article de Anglais | MEDLINE | ID: mdl-38968785

RÉSUMÉ

Influenza remains a global public health threat, and the development of new antivirals is crucial to combat emerging drug-resistant influenza strains. In this study, we report the synthesis and evaluation of a sialyl lactosyl (TS)-bovine serum albumin (BSA) conjugate as a potential multivalent inhibitor of the influenza virus. The key trisaccharide component, TS, was efficiently prepared via a chemoenzymatic approach, followed by conjugation to dibenzocyclooctyne-modified BSA via a strain-promoted azide-alkyne cycloaddition reaction. Biophysical and biochemical assays, including surface plasmon resonance, isothermal titration calorimetry, hemagglutination inhibition, and neuraminidase inhibition, demonstrated the strong binding affinity of TS-BSA to the hemagglutinin (HA) and neuraminidase (NA) proteins of the influenza virus as well as intact virion particles. Notably, TS-BSA exhibited potent inhibitory activity against viral entry and release, preventing cytopathic effects in cell culture. This multivalent presentation strategy highlights the potential of glycocluster-based antivirals for combating influenza and other drug-resistant viral strains.


Sujet(s)
Antiviraux , Sérumalbumine bovine , Antiviraux/pharmacologie , Antiviraux/composition chimique , Antiviraux/synthèse chimique , Sérumalbumine bovine/composition chimique , Sérumalbumine bovine/métabolisme , Animaux , Humains , Grippe humaine/traitement médicamenteux , Relation structure-activité , Relation dose-effet des médicaments , Structure moléculaire , Chiens , Bovins , Tests de sensibilité microbienne , Sialidase/antagonistes et inhibiteurs , Sialidase/métabolisme , Pénétration virale/effets des médicaments et des substances chimiques , Cellules rénales canines Madin-Darby/effets des médicaments et des substances chimiques , Sous-type H1N1 du virus de la grippe A/effets des médicaments et des substances chimiques , Hétérosides
20.
Future Med Chem ; 16(12): 1205-1218, 2024.
Article de Anglais | MEDLINE | ID: mdl-38989986

RÉSUMÉ

Aim: The purpose of this study is to design and synthesize a new series of sulfamethazine derivatives as potent neuraminidase inhibitors. Materials & methods: A sulfamethazine lead compound, ZINC670537, was first identified by structure-based virtual screening technique, then some novel inhibitors X1-X10 based on ZINC670537 were designed and synthesized. Results: Compound X3 exerts the most good potency in inhibiting the wild-type H5N1 NA (IC50 = 6.74 µM) and the H274Y mutant NA (IC50 = 21.09 µM). 150-cavity occupation is very important in determining activities of these inhibitors. The sulfamethazine moiety also plays an important role. Conclusion: Compound X3 maybe regard as a good anti-influenza candidate to preform further study.


[Box: see text].


Sujet(s)
Antiviraux , Conception de médicament , Antienzymes , Sous-type H5N1 du virus de la grippe A , Sialidase , Sulfadimidine , Sialidase/antagonistes et inhibiteurs , Sialidase/métabolisme , Sulfadimidine/pharmacologie , Sulfadimidine/synthèse chimique , Sulfadimidine/composition chimique , Antienzymes/pharmacologie , Antienzymes/synthèse chimique , Antienzymes/composition chimique , Antiviraux/pharmacologie , Antiviraux/synthèse chimique , Antiviraux/composition chimique , Sous-type H5N1 du virus de la grippe A/effets des médicaments et des substances chimiques , Sous-type H5N1 du virus de la grippe A/enzymologie , Relation structure-activité , Humains , Structure moléculaire , Simulation de docking moléculaire
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