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1.
Microb Cell Fact ; 23(1): 159, 2024 May 31.
Article de Anglais | MEDLINE | ID: mdl-38822377

RÉSUMÉ

BACKGROUND: Bacillus subtilis is widely used in industrial-scale riboflavin production. Previous studies have shown that targeted mutagenesis of the ribulose 5-phosphate 3-epimerase in B. subtilis can significantly enhance riboflavin production. This modification also leads to an increase in purine intermediate concentrations in the medium. Interestingly, B. subtilis exhibits remarkable efficiency in purine nucleoside synthesis, often exceeding riboflavin yields. These observations highlight the importance of the conversion steps from inosine-5'-monophosphate (IMP) to 2,5-diamino-6-ribosylamino-4(3 H)-pyrimidinone-5'-phosphate (DARPP) in riboflavin production by B. subtilis. However, research elucidating the specific impact of these reactions on riboflavin production remains limited. RESULT: We expressed the genes encoding enzymes involved in these reactions (guaB, guaA, gmk, ndk, ribA) using a synthetic operon. Introduction of the plasmid carrying this synthetic operon led to a 3.09-fold increase in riboflavin production compared to the control strain. Exclusion of gmk from the synthetic operon resulted in a 36% decrease in riboflavin production, which was further reduced when guaB and guaA were not co-expressed. By integrating the synthetic operon into the genome and employing additional engineering strategies, we achieved riboflavin production levels of 2702 mg/L. Medium optimization further increased production to 3477 mg/L, with a yield of 0.0869 g riboflavin per g of sucrose. CONCLUSION: The conversion steps from IMP to DARPP play a critical role in riboflavin production by B. subtilis. Our overexpression strategies have demonstrated their effectiveness in overcoming these limiting factors and enhancing riboflavin production.


Sujet(s)
Bacillus subtilis , Voies de biosynthèse , Génie métabolique , Purines , Riboflavine , Riboflavine/biosynthèse , Riboflavine/métabolisme , Bacillus subtilis/génétique , Bacillus subtilis/métabolisme , Purines/biosynthèse , Purines/métabolisme , Génie métabolique/méthodes , Opéron , Protéines bactériennes/génétique , Protéines bactériennes/métabolisme
2.
Microbiology (Reading) ; 170(6)2024 Jun.
Article de Anglais | MEDLINE | ID: mdl-38847798

RÉSUMÉ

Bacillus subtilis is a Gram-positive bacterium that is frequently used in the bioindustry for the production of various proteins, because of its superior protein secretion capacities. To determine optimal conditions for protein secretion by B. subtilis, a quick and sensitive method for measuring protein secretion is crucial. A fast and universal assay is most useful for detecting diverse proteins in a high-throughput manner. In this study, we introduce a split-luciferase-based method for measuring protein secretion by B. subtilis. The NanoBiT system was used to monitor secretion of four different proteins: xylanase A, amylase M, protein glutaminase A, and GFP nanobody. Our findings underscore the split-luciferase system as a quick, sensitive, and user-friendly method.


Sujet(s)
Bacillus subtilis , Protéines bactériennes , Bacillus subtilis/métabolisme , Bacillus subtilis/génétique , Protéines bactériennes/métabolisme , Protéines bactériennes/génétique , Luciferases/métabolisme , Luciferases/génétique , Endo-1,4-beta xylanases/métabolisme , Protéines à fluorescence verte/génétique , Protéines à fluorescence verte/métabolisme , Transport des protéines , Amylases/métabolisme , Glutaminase/métabolisme
3.
Microb Cell Fact ; 23(1): 170, 2024 Jun 12.
Article de Anglais | MEDLINE | ID: mdl-38867249

RÉSUMÉ

BACKGROUND: The gram-positive bacterium Bacillus subtilis is widely used for industrial enzyme production. Its ability to secrete a wide range of enzymes into the extracellular medium especially facilitates downstream processing since cell disruption is avoided. Although various heterologous enzymes have been successfully secreted with B. subtilis, the secretion of cytoplasmic enzymes with high molecular weight is challenging. Only a few studies report on the secretion of cytoplasmic enzymes with a molecular weight > 100 kDa. RESULTS: In this study, the cytoplasmic and 120 kDa ß-galactosidase of Paenibacillus wynnii (ß-gal-Pw) was expressed and secreted with B. subtilis SCK6. Different strategies were focused on to identify the best secretion conditions. Tailormade codon-optimization of the ß-gal-Pw gene led to an increase in extracellular ß-gal-Pw production. Consequently, the optimized gene was used to test four signal peptides and two promoters in different combinations. Differences in extracellular ß-gal-Pw activity between the recombinant B. subtilis strains were observed with the successful secretion being highly dependent on the specific combination of promoter and signal peptide used. Interestingly, signal peptides of both the general secretory- and the twin-arginine translocation pathway mediated secretion. The highest extracellular activity of 55.2 ± 6 µkat/Lculture was reached when secretion was mediated by the PhoD signal peptide and expression was controlled by the PAprE promoter. Production of extracellular ß-gal-Pw was further enhanced 1.4-fold in a bioreactor cultivation to 77.5 ± 10 µkat/Lculture with secretion efficiencies of more than 80%. CONCLUSION: For the first time, the ß-gal-Pw was efficiently secreted with B. subtilis SCK6, demonstrating the potential of this strain for secretory production of cytoplasmic, high molecular weight enzymes.


Sujet(s)
Bacillus subtilis , Masse moléculaire , Paenibacillus , beta-Galactosidase , Bacillus subtilis/génétique , Bacillus subtilis/enzymologie , Bacillus subtilis/métabolisme , beta-Galactosidase/métabolisme , beta-Galactosidase/génétique , Paenibacillus/enzymologie , Paenibacillus/génétique , Cytoplasme/métabolisme , Régions promotrices (génétique) , Protéines bactériennes/métabolisme , Protéines bactériennes/génétique , Protéines recombinantes/métabolisme , Protéines recombinantes/génétique , Signaux de triage des protéines
4.
Int J Biol Macromol ; 272(Pt 1): 132813, 2024 Jun.
Article de Anglais | MEDLINE | ID: mdl-38825276

RÉSUMÉ

Bionanocomposite films of three biopolymers including chitosan, gelatin, and pectin incorporated with rosemary essential oil (REO) were developed and characterized in terms of their physical, structural, mechanical, morphological, antioxidant, and antimicrobial properties. Incorporation of REO showed an increased hydrophobic nature thus, improved water vapor transmission rate (WVTR), tensile strength (TS), elongation-at-break (EAB), and thermal stability significantly (P ≤ 0.05) as compared to the control films. The addition of REO leads to more opaque films with relatively increased microstructural heterogeneity, resulting in an increase in film opacity. Fourier transform infrared spectroscopy (FTIR) and particle size revealed that REO incorporation exhibits high physicochemical stability in chitosan, gelatin, and pectin bionanocomposite films. Incorporation of REO exhibited the highest inhibitory activity against the tested pathogenic strains (Bacillus subtilis and Escherichia coli). Furthermore, the addition of REO increased the inhibitory activity of films against ABTS and DPPH free radicals. Therefore, chitosan, gelatin, and pectin-based bionanocomposite films containing REO as food packaging could act as a potential barrier to extending food shelf life.


Sujet(s)
Antioxydants , Chitosane , Emballage alimentaire , Gélatine , Nanocomposites , Huile essentielle , Pectine , Chitosane/composition chimique , Pectine/composition chimique , Gélatine/composition chimique , Huile essentielle/composition chimique , Huile essentielle/pharmacologie , Nanocomposites/composition chimique , Antioxydants/composition chimique , Antioxydants/pharmacologie , Emballage alimentaire/méthodes , Résistance à la traction , Vapeur , Bacillus subtilis/effets des médicaments et des substances chimiques , Antibactériens/composition chimique , Antibactériens/pharmacologie , Escherichia coli/effets des médicaments et des substances chimiques , Anti-infectieux/composition chimique , Anti-infectieux/pharmacologie , Spectroscopie infrarouge à transformée de Fourier
5.
J Appl Microbiol ; 135(6)2024 Jun 03.
Article de Anglais | MEDLINE | ID: mdl-38857885

RÉSUMÉ

AIMS: Klebsiella pneumoniae, an important opportunistic pathogen of nosocomial inflection, is known for its ability to form biofilm. The purpose of the current study is to assess how co- or mono-cultured probiotics affect K. pneumoniae's ability to produce biofilms and investigate the potential mechanisms by using a polyester nonwoven chemostat and a Caco-2 cell line. METHODS AND RESULTS: Compared with pure cultures of Lactobacillus rhamnosus and Lactobacillus sake, the formation of K. pneumoniae biofilm was remarkably inhibited by the mixture of L. rhamnosus, L. sake, and Bacillus subtilis at a ratio of 5:5:1 by means of qPCR and FISH assays. In addition, Lactobacillus in combination with B. subtilis could considerably reduce the adherence of K. pneumoniae to Caco-2 cells by using inhibition, competition, and displacement assays. According to the RT-PCR assay, the adsorption of K. pneumoniae to Caco-2 cells was effectively inhibited by the co-cultured probiotics, leading to significant reduction in the expression of proinflammatory cytokines induced by K. pneumoniae. Furthermore, the HPLC and RT-PCR analyses showed that the co-cultured probiotics were able to successfully prevent the expression of the biofilm-related genes of K. pneumoniae by secreting plenty of organic acids as well as the second signal molecule (c-di-GMP), resulting in inhibition on biofilm formation. CONCLUSION: Co-culture of L. sake, L. rhamnosus, and B. subtilis at a ratio of 5:5:1 could exert an antagonistic effect on the colonization of pathogenic K. pneumoniae by down-regulating the expression of biofilm-related genes. At the same time, the co-cultured probiotics could effectively inhibit the adhesion of K. pneumoniae to Caco-2 cells and block the expression of proinflammatory cytokines induced by K. pneumoniae.


Sujet(s)
Biofilms , Techniques de coculture , Klebsiella pneumoniae , Probiotiques , Biofilms/croissance et développement , Klebsiella pneumoniae/physiologie , Humains , Probiotiques/pharmacologie , Cellules Caco-2 , Bacillus subtilis/physiologie , Bacillus subtilis/génétique , Lacticaseibacillus rhamnosus/physiologie , Adhérence bactérienne , Lactobacillus/physiologie , Cytokines/métabolisme
6.
Chem Commun (Camb) ; 60(52): 6647-6650, 2024 Jun 25.
Article de Anglais | MEDLINE | ID: mdl-38856301

RÉSUMÉ

Asymmetric desymmetrization through the selective reduction of one double bond of prochiral 2,5-cyclohexadienones is highly challenging. A novel method has been developed for synthesizing chiral cyclohexenones by employing an ene-reductase (Bacillus subtilis YqjM) enzyme that belongs to the OYE family. Our strategy demonstrates high substrate scope and enantioselectivity towards substrates containing all-carbon as well as heteroatom (O, N)-containing quaternary centers. The mechanistic studies (kH/D = ∼1.8) indicate that hydride transfer is probably the rate-limiting step. Mutation of several active site residues did not affect the stereochemical outcomes. This work provides a convenient way of synthesizing various enantioselective γ,γ-disubstituted cyclohexanones using enzymes.


Sujet(s)
Bacillus subtilis , Stéréoisomérie , Bacillus subtilis/enzymologie , Oxidoreductases/métabolisme , Oxidoreductases/composition chimique , Structure moléculaire , Cyclohexènes/composition chimique , Cyclohexènes/métabolisme , Cyclohexènes/synthèse chimique
7.
Proc Natl Acad Sci U S A ; 121(25): e2321890121, 2024 Jun 18.
Article de Anglais | MEDLINE | ID: mdl-38857388

RÉSUMÉ

In bacteria, attenuation of protein-tyrosine phosphorylation occurs during oxidative stress. The main described mechanism behind this effect is the H2O2-triggered conversion of bacterial phospho-tyrosines to protein-bound 3,4-dihydroxyphenylalanine. This disrupts the bacterial tyrosine phosphorylation-based signaling network, which alters the bacterial polysaccharide biosynthesis. Herein, we report an alternative mechanism, in which oxidative stress leads to a direct inhibition of bacterial protein-tyrosine kinases (BY-kinases). We show that DefA, a minor peptide deformylase, inhibits the activity of BY-kinase PtkA when Bacillus subtilis is exposed to oxidative stress. High levels of PtkA activity are known to destabilize B. subtilis pellicle formation, which leads to higher sensitivity to oxidative stress. Interaction with DefA inhibits both PtkA autophosphorylation and phosphorylation of its substrate Ugd, which is involved in exopolysaccharide formation. Inactivation of defA drastically reduces the capacity of B. subtilis to cope with oxidative stress, but it does not affect the major oxidative stress regulons PerR, OhrR, and Spx, indicating that PtkA inhibition is the main pathway for DefA involvement in this stress response. Structural analysis identified DefA residues Asn95, Tyr150, and Glu152 as essential for interaction with PtkA. Inhibition of PtkA depends also on the presence of a C-terminal α-helix of DefA, which resembles PtkA-interacting motifs from known PtkA activators, TkmA, SalA, and MinD. Loss of either the key interacting residues or the inhibitory helix of DefA abolishes inhibition of PtkA in vitro and impairs postoxidative stress recovery in vivo, confirming the involvement of these structural features in the proposed mechanism.


Sujet(s)
Bacillus subtilis , Protéines bactériennes , Stress oxydatif , Bacillus subtilis/métabolisme , Bacillus subtilis/génétique , Phosphorylation , Protéines bactériennes/métabolisme , Protéines bactériennes/génétique , Protein-tyrosine kinases/métabolisme , Peroxyde d'hydrogène/métabolisme , Amidohydrolases/métabolisme
8.
Microb Biotechnol ; 17(6): e14473, 2024 Jun.
Article de Anglais | MEDLINE | ID: mdl-38877615

RÉSUMÉ

Poly-L-lactic acid (PLLA) is currently the most abundant bioplastic; however, limited environmental biodegradability and few recycling options diminish its value as a biodegradable commodity. Enzymatic recycling is one strategy for ensuring circularity of PLLA, but this approach requires a thorough understanding of enzymatic mechanisms and protein engineering strategies to enhance activity. In this study, we engineer PLLA depolymerizing subtilisin enzymes originating from Bacillus species to elucidate the molecular mechanisms dictating their PLLA depolymerization activity and to improve their function. The surface-associated amino acids of two closely related subtilisin homologues originating from Bacillus subtilis (BsAprE) and Bacillus pumilus (BpAprE) were compared, as they were previously engineered to have nearly identical active sites, but still varied greatly in PLLA depolymerizing activity. Further analysis identified several surface-associated amino acids in BpAprE that lead to enhanced PLLA depolymerization activity when engineered into BsAprE. In silico protein modelling demonstrated increased enzyme surface hydrophobicity in engineered BsAprE variants and revealed a structural motif favoured for PLLA depolymerization. Experimental evidence suggests that increases in activity are associated with enhanced polymer binding as opposed to substrate specificity. These data highlight enzyme adsorption as a key factor in PLLA depolymerization by subtilisins.


Sujet(s)
Polyesters , Polyesters/métabolisme , Polyesters/composition chimique , Adsorption , Polymérisation , Bacillus/enzymologie , Bacillus/génétique , Subtilisines/composition chimique , Subtilisines/génétique , Subtilisines/métabolisme , Bacillus subtilis/enzymologie , Bacillus subtilis/génétique , Bacillus subtilis/composition chimique , Modèles moléculaires , Ingénierie des protéines , Protéines bactériennes/génétique , Protéines bactériennes/composition chimique , Protéines bactériennes/métabolisme
9.
Sci Rep ; 14(1): 13818, 2024 06 15.
Article de Anglais | MEDLINE | ID: mdl-38879638

RÉSUMÉ

The hematophagous common bed bug, Cimex lectularius, is not known to transmit human pathogens outside laboratory settings, having evolved various immune defense mechanisms including the expression of antimicrobial peptides (AMPs). We unveil three novel prolixicin AMPs in bed bugs, exhibiting strong homology to the prolixicin of kissing bugs, Rhodnius prolixus, and to diptericin/attacin AMPs. We demonstrate for the first time sex-specific and immune mode-specific upregulation of these prolixicins in immune organs, the midgut and rest of body, following injection and ingestion of Gr+ (Bacillus subtilis) and Gr- (Escherichia coli) bacteria. Synthetic CL-prolixicin2 significantly inhibited growth of E. coli strains and killed or impeded Trypanosoma cruzi, the Chagas disease agent. Our findings suggest that prolixicins are regulated by both IMD and Toll immune pathways, supporting cross-talk and blurred functional differentiation between major immune pathways. The efficacy of CL-prolixicin2 against T. cruzi underscores the potential of AMPs in Chagas disease management.


Sujet(s)
Punaises des lits , Escherichia coli , Trypanosoma cruzi , Animaux , Trypanosoma cruzi/effets des médicaments et des substances chimiques , Punaises des lits/microbiologie , Punaises des lits/effets des médicaments et des substances chimiques , Escherichia coli/effets des médicaments et des substances chimiques , Bacillus subtilis/métabolisme , Bacillus subtilis/effets des médicaments et des substances chimiques , Femelle , Peptides antimicrobiens/pharmacologie , Peptides antimicrobiens/métabolisme , Mâle , Maladie de Chagas/parasitologie , Protéines d'insecte/métabolisme , Séquence d'acides aminés
10.
Microb Cell Fact ; 23(1): 168, 2024 Jun 10.
Article de Anglais | MEDLINE | ID: mdl-38858761

RÉSUMÉ

BACKGROUND: Microbially induced calcium carbonate precipitation has been extensively researched for geoengineering applications as well as diverse uses within the built environment. Bacteria play a crucial role in producing calcium carbonate minerals, via enzymes including carbonic anhydrase-an enzyme with the capability to hydrolyse CO2, commonly employed in carbon capture systems. This study describes previously uncharacterised carbonic anhydrase enzyme sequences capable of sequestering CO2 and subsequentially generating CaCO3 biominerals and suggests a route to produce carbon negative cementitious materials for the construction industry. RESULTS: Here, Bacillus subtilis was engineered to recombinantly express previously uncharacterised carbonic anhydrase enzymes from Bacillus megaterium and used as a whole cell catalyst allowing this novel bacterium to sequester CO2 and convert it to calcium carbonate. A significant decrease in CO2 was observed from 3800 PPM to 820 PPM upon induction of carbonic anhydrase and minerals recovered from these experiments were identified as calcite and vaterite using X-ray diffraction. Further experiments mixed the use of this enzyme (as a cell free extract) with Sporosarcina pasteurii to increase mineral production whilst maintaining a comparable level of CO2 sequestration. CONCLUSION: Recombinantly produced carbonic anhydrase successfully sequestered CO2 and converted it into calcium carbonate minerals using an engineered microbial system. Through this approach, a process to manufacture cementitious materials with carbon sequestration ability could be developed.


Sujet(s)
Bacillus subtilis , Carbonate de calcium , Dioxyde de carbone , Carbonic anhydrases , Sporosarcina , Carbonate de calcium/métabolisme , Carbonate de calcium/composition chimique , Bacillus subtilis/métabolisme , Bacillus subtilis/génétique , Bacillus subtilis/enzymologie , Dioxyde de carbone/métabolisme , Carbonic anhydrases/métabolisme , Carbonic anhydrases/génétique , Sporosarcina/métabolisme , Sporosarcina/enzymologie , Sporosarcina/génétique , Bacillus megaterium/métabolisme , Bacillus megaterium/génétique , Bacillus megaterium/enzymologie , Séquestration du carbone , Précipitation chimique , Protéines bactériennes/métabolisme , Protéines bactériennes/génétique
11.
Exp Oncol ; 46(1): 30-37, 2024 May 31.
Article de Anglais | MEDLINE | ID: mdl-38852055

RÉSUMÉ

AIM: To study the activity of antitumor immunity effectors and to analyze possible mechanisms of peritoneal Mph M1/M2 repolarization of Balb/c mice under the influence of lectin from B. subtilis IMV B-7724 in the dynamics of the model tumor growth. MATERIALS AND METHODS: Studies were performed on Balb/c mice; Ehrlich adenocarcinoma (АСЕ) was used as an experimental tumor. Lectin from B. subtilis IMV B-7724 was administered to ACE-bearing mice at a dose of 1 mg/kg of body weight, 10 times. Immunological testing was performed on days 21 and 28 after tumor grafting. The functional activity of peritoneal macrophages (Mph), natural killer (NK) cells, cytotoxic lymphocytes (CTL), and cytokine levels (IFN-γ, IL-4) were studied by the standard methods. mRNA expression levels of transcription factors STAT-1, STAT-6, IRF5, and IRF4 in Mph were evaluated. RESULTS: The administration of lectin from B. subtilis IMV B-7724 to mice with solid ACE led to the preservation of the initial functional state of peritoneal Mph M1 during the experiment. The bacterial lectin ensured the preservation of the cytotoxic activity of CD8+ T-lymphocytes and a significant (p < 0.05) increase in the NK activity (by 2.7 times compared to the intact animals and by 12.9 times compared to the untreated mice). A strong positive correlation was noted between the levels of the functional activity of Mph and CD8+ T-lymphocytes of animals with tumors and the indices of the antitumor effectiveness of bacterial lectin. The indirect polarization of Mph was evidenced by a strong positive correlation between the level of the NO/Arg ratio (which characterizes the direction of Mph polarization) and the cytotoxic activity of CD8+ T-lymphocytes, NK cells, and the expression of STAT1/STAT6 (the 21st day) and IRF5/IRF4 (the 28th day). CONCLUSION: In ACE-bearing mice, repolarization of the peritoneal Mph toward M1 can occur not only due to the direct action of bacterial lectin on the cellular receptors but also with the involvement of other effectors of antitumor immunity (NK cells, T-lymphocytes). The transcription factors of the STAT and IRF signaling pathways are involved in the polarization process.


Sujet(s)
Cellules tueuses naturelles , Macrophages péritonéaux , Souris de lignée BALB C , Animaux , Souris , Macrophages péritonéaux/immunologie , Macrophages péritonéaux/métabolisme , Macrophages péritonéaux/effets des médicaments et des substances chimiques , Cellules tueuses naturelles/immunologie , Cellules tueuses naturelles/métabolisme , Carcinome d'Ehrlich/immunologie , Carcinome d'Ehrlich/anatomopathologie , Carcinome d'Ehrlich/métabolisme , Bacillus subtilis , Cytokines/métabolisme , Lymphocytes T cytotoxiques/immunologie , Lymphocytes T cytotoxiques/métabolisme
12.
Arch Microbiol ; 206(7): 296, 2024 Jun 10.
Article de Anglais | MEDLINE | ID: mdl-38856816

RÉSUMÉ

Environmental contamination from petroleum refinery operations has increased due to the rapid population growth and modernization of society, necessitating urgent repair. Microbial remediation of petroleum wastewater by prominent bacterial cultures holds promise in circumventing the issue of petroleum-related pollution. Herein, the bacterial culture was isolated from petroleum-contaminated sludge samples for the valorization of polyaromatic hydrocarbons and biodegradation of petroleum wastewater samples. The bacterial strain was screened and identified as Bacillus subtilis IH-1. After six days of incubation, the bacteria had degraded 25.9% of phenanthrene and 20.3% of naphthalene. The treatment of wastewater samples was assessed using physico-chemical and Fourier-transform infrared spectroscopy analysis, which revealed that the level of pollutants was elevated and above the allowed limits. Following bacterial degradation, the reduction in pollution parameters viz. EC (82.7%), BOD (87.0%), COD (80.0%), total phenols (96.3%), oil and grease (79.7%), TKN (68.8%), TOC (96.3%) and TPH (52.4%) were observed. The reduction in pH and heavy metals were also observed after bacterial treatment. V. mungo was used in the phytotoxicity test, which revealed at 50% wastewater concentration the reduction in biomass (30.3%), root length (87.7%), shoot length (93.9%), and seed germination (30.0%) was observed in comparison to control. When A. cepa root tips immersed in varying concentrations of wastewater samples, the mitotic index significantly decreased, suggesting the induction of cytotoxicity. However, following the bacterial treatment, there was a noticeable decrease in phytotoxicity and cytotoxicity. The bacterial culture produces lignin peroxidase enzyme and has the potential to degrade the toxic pollutants of petroleum wastewater. Therefore the bacterium may be immobilised or directly used at reactor scale or pilot scale study to benefit the industry and environmental safety.


Sujet(s)
Bacillus subtilis , Dépollution biologique de l'environnement , Pétrole , Eaux usées , Bacillus subtilis/métabolisme , Bacillus subtilis/croissance et développement , Eaux usées/microbiologie , Eaux usées/composition chimique , Pétrole/métabolisme , Pétrole/toxicité , Phénanthrènes/métabolisme , Phénanthrènes/analyse , Phénanthrènes/toxicité , Naphtalènes/métabolisme , Naphtalènes/toxicité , Polluants chimiques de l'eau/métabolisme , Polluants chimiques de l'eau/toxicité , Polluants chimiques de l'eau/analyse , Eaux d'égout/microbiologie , Métaux lourds/métabolisme , Métaux lourds/toxicité , Métaux lourds/analyse
13.
Microb Cell Fact ; 23(1): 182, 2024 Jun 19.
Article de Anglais | MEDLINE | ID: mdl-38898430

RÉSUMÉ

BACKGROUND: Guanosine is a purine nucleoside that is widely used as a raw material for food additives and pharmaceutical products. Microbial fermentation is the main production method of guanosine. However, the guanosine-producing strains possess multiple metabolic pathway interactions and complex regulatory mechanisms. The lack of strains with efficiently producing-guanosine greatly limited industrial application. RESULTS: We attempted to efficiently produce guanosine in Escherichia coli using systematic metabolic engineering. First, we overexpressed the purine synthesis pathway from Bacillus subtilis and the prs gene, and deleted three genes involved in guanosine catabolism to increase guanosine accumulation. Subsequently, we attenuated purA expression and eliminated feedback and transcription dual inhibition. Then, we modified the metabolic flux of the glycolysis and Entner-Doudoroff (ED) pathways and performed redox cofactors rebalancing. Finally, transporter engineering and enhancing the guanosine synthesis pathway further increased the guanosine titre to 134.9 mg/L. After 72 h of the fed-batch fermentation in shake-flask, the guanosine titre achieved 289.8 mg/L. CONCLUSIONS: Our results reveal that the guanosine synthesis pathway was successfully optimized by combinatorial metabolic engineering, which could be applicable to the efficient synthesis of other nucleoside products.


Sujet(s)
Escherichia coli , Fermentation , Guanosine , Génie métabolique , Génie métabolique/méthodes , Guanosine/métabolisme , Escherichia coli/métabolisme , Escherichia coli/génétique , Bacillus subtilis/métabolisme , Bacillus subtilis/génétique
14.
J Cell Mol Med ; 28(12): e18481, 2024 Jun.
Article de Anglais | MEDLINE | ID: mdl-38899542

RÉSUMÉ

Bacillus subtilis relies on biofilms for survival in harsh environments. Extracellular polymeric substance (EPS) is a crucial component of biofilms, yet the dynamics of EPS production in single cells remain elusive. To unveil the modulation of EPS synthesis, we built a minimal network model comprising the SinI-SinR-SlrR module, Spo0A, and EPS. Stochastic simulations revealed that antagonistic interplay between SinI and SinR enables EPS production in bursts. SlrR widens these bursts and increases their frequency by stabilizing SinR-SlrR complexes and depleting free SinR. DNA replication and chromosomal positioning of key genes dictate pulsatile changes in the slrR:sinR gene dosage ratio (gr) and Spo0A-P levels, each promoting EPS production in distinct phases of the cell cycle. As the cell cycle lengthens with nutrient stress, the duty cycle of gr pulsing decreases, whereas the amplitude of Spo0A-P pulses elevates. This coordinated response facilitates keeping a constant proportion of EPS-secreting cells within colonies across diverse nutrient conditions. Our results suggest that bacteria may 'encode' eps expression through strategic chromosomal organization. This work illuminates how stochastic protein interactions, gene copy number imbalance, and cell-cycle dynamics orchestrate EPS synthesis, offering a deeper understanding of biofilm formation.


Sujet(s)
Bacillus subtilis , Protéines bactériennes , Biofilms , Réplication de l'ADN , Régulation de l'expression des gènes bactériens , Biofilms/croissance et développement , Bacillus subtilis/génétique , Bacillus subtilis/métabolisme , Bacillus subtilis/physiologie , Réplication de l'ADN/génétique , Protéines bactériennes/génétique , Protéines bactériennes/métabolisme , Matrice de substances polymériques extracellulaires/métabolisme , Cycle cellulaire/génétique
15.
Nat Commun ; 15(1): 5285, 2024 Jun 20.
Article de Anglais | MEDLINE | ID: mdl-38902266

RÉSUMÉ

Enzymes of the central metabolism tend to assemble into transient supramolecular complexes. However, the functional significance of the interactions, particularly between enzymes catalyzing non-consecutive reactions, remains unclear. Here, by co-localizing two non-consecutive enzymes of the TCA cycle from Bacillus subtilis, malate dehydrogenase (MDH) and isocitrate dehydrogenase (ICD), in phase separated droplets we show that MDH-ICD interaction leads to enzyme agglomeration with a concomitant enhancement of ICD catalytic rate and an apparent sequestration of its reaction product, 2-oxoglutarate. Theory demonstrates that MDH-mediated clustering of ICD molecules explains the observed phenomena. In vivo analyses reveal that MDH overexpression leads to accumulation of 2-oxoglutarate and reduction of fluxes flowing through both the catabolic and anabolic branches of the carbon-nitrogen intersection occupied by 2-oxoglutarate, resulting in impeded ammonium assimilation and reduced biomass production. Our findings suggest that the MDH-ICD interaction is an important coordinator of carbon-nitrogen metabolism.


Sujet(s)
Bacillus subtilis , Carbone , Cycle citrique , Isocitrate dehydrogenases , Acides cétoglutariques , Malate dehydrogenase , Azote , Azote/métabolisme , Carbone/métabolisme , Malate dehydrogenase/métabolisme , Malate dehydrogenase/génétique , Bacillus subtilis/métabolisme , Bacillus subtilis/génétique , Bacillus subtilis/enzymologie , Isocitrate dehydrogenases/métabolisme , Isocitrate dehydrogenases/génétique , Acides cétoglutariques/métabolisme , Protéines bactériennes/métabolisme , Protéines bactériennes/génétique , Composés d'ammonium/métabolisme
16.
Anim Sci J ; 95(1): e13971, 2024.
Article de Anglais | MEDLINE | ID: mdl-38899765

RÉSUMÉ

This study investigated the effects of cyclic antimicrobial lipopeptides (CLPs) from Bacillus subtilis on the growth performance, gut morphology, and cecal gene expression and microbiota in broilers; 120 1-day-old unsexed Arbor Acres chicks were randomly divided into four groups, with six replicates in each group and five broilers per cage. These groups were fed a basal diet (C), basal diet plus 10-mg enramycin/kg (E), and basal diet plus 51-mg CLPs/kg (L) or 102-mg CLPs/kg (H). The results indicated that CLP supplementation linearly increased the body weight compared with the C group at 35 days of age. Between 15 and 35 days and 1 and 35 days of age, CLP supplementation linearly increased the average daily gain compared with the C group. The duodenal villus height was significantly increased in the H group compared with the C and E groups. In the cecum, CLP supplementation linearly increased SOD and ZO-1 mRNA expression compared with the C group. ß diversity of microbiota indicated distinct clusters between the groups. CLP supplementation linearly increased the abundance of the genus Lactobacillus in the cecal digesta compared with the C group. These results demonstrate that B. subtilis-produced CLPs dose-dependently increase broilers' growth performance, improve their gut morphology, and modulate their gut microbiota.


Sujet(s)
Bacillus subtilis , Caecum , Poulets , Régime alimentaire , Compléments alimentaires , Microbiome gastro-intestinal , Expression des gènes , Lipopeptides , Animaux , Poulets/croissance et développement , Poulets/microbiologie , Caecum/microbiologie , Microbiome gastro-intestinal/effets des médicaments et des substances chimiques , Lipopeptides/pharmacologie , Expression des gènes/effets des médicaments et des substances chimiques , Régime alimentaire/médecine vétérinaire , ARN messager/métabolisme , Aliment pour animaux , Peptides cycliques/pharmacologie , Peptides cycliques/administration et posologie , Lactobacillus , Intestins/anatomie et histologie , Intestins/microbiologie , Intestins/effets des médicaments et des substances chimiques
17.
Curr Microbiol ; 81(7): 207, 2024 Jun 04.
Article de Anglais | MEDLINE | ID: mdl-38831110

RÉSUMÉ

The current study aimed to evaluate the plant growth-promoting (PGP) potential of endophytic strain Bacillus subtilis KU21 isolated from the roots of Rosmarinus officinalis. The strain exhibited multiple traits of plant growth promotion viz., phosphate (P) solubilization, nitrogen fixation, indole-3-acetic acid (IAA), siderophore, hydrogen cyanide (HCN), lytic enzymes production, and 1-aminocyclopropane-1-carboxylate (ACC) deaminase activity. The isolate also exhibited antagonistic activity against phytopathogenic fungi, i.e., Fusarium oxysporum, Fusarium graminiarum, and Rhizoctonia solani. The P-solubilization activity of B. subtilis KU21 was further elucidated via detection of glucose dehydrogenase (gdh) gene involved in the production of gluconic acid which is responsible for P-solubilization. Further, B. subtilis KU21 was evaluated for in vivo growth promotion studies of tomato (test crop) under net house conditions. A remarkable increase in seed germination, plant growth parameters, nutrient acquisition, and soil quality parameters (NPK) was observed in B. subtilis KU21-treated plants over untreated control. Hence, the proposed module could be recommended for sustainable tomato production in the Northwest Himalayan region without compromising soil health and fertility.


Sujet(s)
Bacillus subtilis , Endophytes , Racines de plante , Rosmarinus , Bacillus subtilis/génétique , Bacillus subtilis/croissance et développement , Bacillus subtilis/isolement et purification , Bacillus subtilis/métabolisme , Endophytes/isolement et purification , Endophytes/métabolisme , Endophytes/génétique , Endophytes/classification , Rosmarinus/composition chimique , Rosmarinus/microbiologie , Racines de plante/microbiologie , Racines de plante/croissance et développement , Solanum lycopersicum/microbiologie , Solanum lycopersicum/croissance et développement , Fusarium/croissance et développement , Fusarium/génétique , Fusarium/métabolisme , Microbiologie du sol , Développement des plantes , Germination , Acides indolacétiques/métabolisme , Rhizoctonia/croissance et développement , Rhizoctonia/effets des médicaments et des substances chimiques , Fixation de l'azote , Phosphates/métabolisme
18.
Sci Rep ; 14(1): 12651, 2024 06 02.
Article de Anglais | MEDLINE | ID: mdl-38825618

RÉSUMÉ

Effective disinfection methods are crucial in the cold chain transportation process of food due to the specificity of temperature and the diversity of contaminated flora. The objective of this study was to investigate the sanitizing effect of different disinfectants on various fungi at - 20 °C to achieve accurate disinfection of diverse bacterial populations. Peracetic acid, hydrogen peroxide, and potassium bisulfate were selected as low-temperature disinfectants and were combined with antifreeze. The sanitizing effect of these cryogenic disinfectants on pathogens such as Bacillus subtilis black variant spores (ATCC9372), Staphylococcus aureus (ATCC 6538), Candida albicans (ATCC 10231), Escherichia coli (8099), and poliovirus (PV-1) was sequentially verified by bactericidal and virus inactivation experiments. After a specified time of disinfection, a neutralizing agent was used to halt the sanitizing process. The study demonstrates that different disinfectants exhibit selective effects during the low-temperature disinfection process. Peracetic acid, hydrogen peroxide, and potassium monopersulfate are suitable for the low-temperature environmental disinfection of bacterial propagules, viruses, and fungal contaminants. However, for microorganisms with strong resistance to spores, a low-temperature disinfectant based on peracetic acid should be chosen for effective disinfection treatment. Our results provide a valuable reference for selecting appropriate disinfectants to sanitize various potential pathogens in the future.


Sujet(s)
Basse température , Désinfectants , Désinfection , Peroxyde d'hydrogène , Acide peracétique , Désinfectants/pharmacologie , Désinfection/méthodes , Peroxyde d'hydrogène/pharmacologie , Acide peracétique/pharmacologie , Sulfates/pharmacologie , Bacillus subtilis/effets des médicaments et des substances chimiques , Composés du potassium/pharmacologie , Staphylococcus aureus/effets des médicaments et des substances chimiques , Candida albicans/effets des médicaments et des substances chimiques , Escherichia coli/effets des médicaments et des substances chimiques , Poliovirus/effets des médicaments et des substances chimiques
19.
J Anim Sci ; 1022024 Jan 03.
Article de Anglais | MEDLINE | ID: mdl-38828876

RÉSUMÉ

The objective was to determine the influence of long-term supplementation (258 d) of a direct-fed microbial (DFM) and/or yeast cell wall (YCW) product on bacterial populations in beef steers. Single-sourced Charolais × Red Angus steers (n = 256; body weight = 246 ±â€…1.68 kg) were used in a randomized complete block design and blocked by location into one of four treatments: 1) fed no DFM and no YCW (Control); 2) fed only the DFM (DFM; Certillus CP B1801 Dry, 28 g/steer d-1 ); 3) fed only the YCW (YCW; Celmanax; 18 g/steer d-1 ); and 4) fed the DFM and the YCW (DFM+YCW). Steers were vaccinated for respiratory and clostridial diseases and treated for internal and external parasites at processing and individually weighed on days 1, 14, 42, 77, 105, 133, 161, 182, 230, and 258. To determine bacterial prevalence, fecal samples were collected on days 1, 14, 77, 133, 182, and 230 and environmental (pen area, feed, and water) samples were collected at the beginning of the week when cattle were weighed. No treatment × day interactions or treatment effects (P > 0.05) were observed between treatment groups at any sampling days for the bacterial populations. Samples on days 1, 133, and 182 had greater (P < 0.05) Clostridia levels compared to the other sampling points but were not different from each other. Clostridia levels were also greater (P < 0.05) on day 77 compared to days 14 and 230. Samples on days 77 and 230 had greater (P < 0.05) Clostridium perfringens levels compared to the other sampling points but were not different (P > 0.05) from each other. Samples on days 1 and 14 had lower (P < 0.05) total Escherichia coli levels compared to the other sampling points but were not different (P > 0.05) from each other. Escherichia coli levels on day 77 were higher (P < 0.05) compared to days 133, 182, and 230. Little Salmonella prevalence (1.5%) was observed throughout the study. This study had greater levels of Clostridia compared to small and large commercial feedlots in the Church and Dwight research database, but C. perfringens, total and pathogenic E. coli, and Salmonella prevalence were notably lower. Collectively, there were no appreciable treatment influences on bacterial populations. These data further indicate a low pathogenic bacterial challenge at the trial site, which could partially explain the lack of differences with DFM or YCW supplementation. The DFM and YCW used alone or in combination cannot be expected to show additional benefits when animals are relatively unstressed with a low pathogenic bacterial challenge.


The objective of this research was to determine the influence of long-term supplementation (258 d) of a direct-fed microbial (DFM) and/or yeast cell wall (YCW) product on bacterial populations in beef steers. Collectively, there were no appreciable treatment influences on bacterial populations. These data further indicate a low pathogenic bacterial challenge at the trial site, which could further explain the reasons for little differences. The DFM and YCW used alone or in combination cannot be expected to show productive benefits when animals are relatively unstressed with a low pathogenic bacterial challenge.


Sujet(s)
Aliment pour animaux , Bacillus subtilis , Clostridium perfringens , Régime alimentaire , Compléments alimentaires , Probiotiques , Animaux , Bovins , Mâle , Aliment pour animaux/analyse , Régime alimentaire/médecine vétérinaire , Clostridium perfringens/physiologie , Probiotiques/pharmacologie , Probiotiques/administration et posologie , Compléments alimentaires/analyse , Maladies des bovins/microbiologie , Maladies des bovins/épidémiologie , Maladies des bovins/prévention et contrôle , Salmonella , Escherichia coli , Fèces/microbiologie , Infections à Clostridium/médecine vétérinaire , Infections à Clostridium/épidémiologie , Infections à Clostridium/prévention et contrôle , Infections à Clostridium/microbiologie , Clostridium , Répartition aléatoire
20.
Sheng Wu Gong Cheng Xue Bao ; 40(6): 1895-1908, 2024 Jun 25.
Article de Chinois | MEDLINE | ID: mdl-38914499

RÉSUMÉ

Human lactoferrin (HLF), an essential nutrient found in breast milk, possesses antibacterial, anti-inflammatory, and immune-enhancing properties. In this study, the effects of three constitutive promoters (P21, P43, and Pveg) and three inducible promoters (Pgrac100, PxylA, and Ptet*) on the expression of HLF were compared using Bacillus subtilis G601 as the host strain. The results showed that the highest expression of HLF, reaching 651.57 µg/L, was achieved when regulated by the Ptet* promoter. Furthermore, the combinational optimization of ribosome binding site (RBS) and signal peptides was investigated, and the optimal combination of RBS6 and SPyycP resulted in increased HLF expression to 1 099.87 µg/L, with 498.68 µg/L being secreted extracellularly. To further enhance HLF secretion, the metal cations-related gene dltD was knocked out, leading to an extracellular HLF level of 637.28 µg/L. This study successfully demonstrated the secretory expression of HLF in B. subtilis through the selection and optimization of expression elements, laying the foundation for the development of efficient B. subtilis cell factories for lactoprotein synthesis.


Sujet(s)
Bacillus subtilis , Lactoferrine , Régions promotrices (génétique) , Bacillus subtilis/métabolisme , Bacillus subtilis/génétique , Lactoferrine/génétique , Lactoferrine/métabolisme , Lactoferrine/biosynthèse , Humains , Protéines recombinantes/biosynthèse , Protéines recombinantes/génétique , Protéines recombinantes/métabolisme
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