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1.
Biochim Biophys Acta Proteins Proteom ; 1868(12): 140527, 2020 12.
Artigo em Inglês | MEDLINE | ID: mdl-32853768

RESUMO

N-Methyl-d-aspartate (NMDA), which is a selective agonist for the NMDA receptor, has recently been shown to be present in various biological tissues. In mammals, the activity of d-aspartate N-methyltransferase (DDNMT), which produces NMDA from d-aspartate, has been detected only in homogenates prepared from rat tissues. Moreover, the enzymatic properties of DDNMT have been poorly studied and its molecular entity has not yet been identified. In this report, we show for the first time that the activity of DDNMT is present in mouse tissues and succeed in obtaining a partially purified enzyme preparation from a mouse tissue homogenate with a purification fold of 1900 or more, and have characterized the enzymatic activity of this preparation. The results indicate that DDNMT, which is highly specific for d-aspartate and is S-adenosyl-l-methionine-dependent, is a novel enzyme that clearly differs from the known methylamine-glutamate N-methyltransferase (EC 2.1.1.21) and glycine N-methyltransferase (EC 2.1.1.20).


Assuntos
Metiltransferases/metabolismo , N-Metilaspartato/biossíntese , N-Metilaspartato/farmacologia , Receptores de N-Metil-D-Aspartato/agonistas , Animais , Biocatálise , Ativação Enzimática , Feminino , Concentração de Íons de Hidrogênio , Metiltransferases/química , Metiltransferases/isolamento & purificação , Camundongos , Peso Molecular , Proteínas Recombinantes , Especificidade por Substrato
2.
Appl Microbiol Biotechnol ; 104(3): 1125-1134, 2020 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-31832710

RESUMO

Sphingobium sp. strain TCM1 can significantly degrade chlorinated organophosphorus flame retardants, such as tris(2-chloroethyl) phosphate. The PhoK of strain TCM1 (Sb-PhoK) is the main alkaline phosphatase (APase) that catalyzes the last step in the degradation pathway. Here, we purified and characterized Sb-PhoK produced in E. coli, and analyzed the regulation of Sb-phoK gene expression in strain TCM1. The recombinant Sb-PhoK was produced in the mature form, lacking a putative signal peptide, and formed a homodimer. Purified Sb-PhoK exhibited 384 U/mg of specific activity at 37 °C. The optimum temperature was 50 °C, and Sb-PhoK was completely inactivated when incubated at 60 °C for 10 min. The optimum pH was 10, with stability observed at pH 6.0-10.5. Sb-PhoK was suggested to contain two Ca2+ and one Zn2+ per subunit, but excess addition of Zn2+ into the reaction mixture markedly inhibited the enzyme activity. Sb-PhoK showed phosphatase activity against various phosphorylated compounds, except for bis(p-nitrophenyl) phosphate, indicating that it is a phosphomonoesterase with broad substrate specificity. The Km and kcat for p-nitrophenyl phosphate were 2.31 mM and 1270 s-1, respectively, under optimal conditions. The enzyme was strongly inhibited by vanadate, dithiothreitol, and SDS, but was highly resistant to urea and Triton X-100. Sb-phoK gene expression was regulated by the inorganic phosphate concentration in culture medium, and was induced at a low inorganic phosphate concentration. The deletion of Sb-phoB gene resulted in no induction of Sb-phoK gene even at a low inorganic phosphate concentration, confirming that Sb-PhoK is a member of Pho regulon.


Assuntos
Fosfatase Alcalina/biossíntese , Regulação Bacteriana da Expressão Gênica , Sphingomonadaceae/genética , Fosfatase Alcalina/genética , Biocatálise , Escherichia coli/genética , Retardadores de Chama/metabolismo , Concentração de Íons de Hidrogênio , Hidrólise , Organofosfatos/metabolismo , Proteínas Recombinantes/biossíntese , Sphingomonadaceae/enzimologia
3.
Biosci Biotechnol Biochem ; 84(1): 95-102, 2020 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-31478781

RESUMO

D-Aspartate, aspartate racemase activity, and D-aspartate oxidase activity were detected in tissues from several types of starfish. Aspartate racemase activity in male testes of Patiria pectinifera was significantly elevated in the summer months of the breeding season compared with spring months. We also compared aspartate racemase activity with the gonad index and found that activity in individuals with a gonad index ≥6% was four-fold higher than that of individuals with a gonad index <6%. The ratio of the D-form of aspartate to total aspartate was approximately 25% in testes with a gonad index <6% and this increased to approximately 40% in testes with a gonad index ≥6%. However, such changes were not observed in female ovaries. Administration of D-aspartate into male starfish caused testicular growth. These results indicate the possible involvement of aspartate racemase and D-aspartate in testicular maturation in echinoderm starfish.


Assuntos
Isomerases de Aminoácido/metabolismo , Ácido D-Aspártico/metabolismo , Ácido D-Aspártico/farmacologia , Estrelas-do-Mar/fisiologia , Testículo/crescimento & desenvolvimento , Testículo/metabolismo , Animais , Ácido Aspártico/administração & dosagem , Ácido Aspártico/farmacologia , Cromatografia Líquida de Alta Pressão , Ácido D-Aspártico/administração & dosagem , Estrona/administração & dosagem , Estrona/farmacologia , Feminino , Masculino , Ovário/crescimento & desenvolvimento , Estações do Ano , Espermatogênese/fisiologia , Testosterona/administração & dosagem , Testosterona/farmacologia
4.
Biosci Biotechnol Biochem ; 84(3): 500-506, 2020 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-31694479

RESUMO

A liquid chromatography-electrospray ionization-tandem mass spectrometry (LC-ESI-MS/MS) method for the separation and quantification of the enantiomers of N-methylaspartate and N-methylglutamate, after derivatization with Nα-(5-fluoro-2,4-dinitrophenyl)-L-leucinamide was established. The time required for the LC-ESI-MS/MS analysis was within 20 min and the detection limit was approximately 10 fmol per injection, demonstrating that this method can be used for the rapid determination of D-aspartate N-methyltransferase activity in the ark shell clam Scapharca broughtonii.Abbreviations: NMDA: N-methyl-D-aspartate; NMLA: N-methyl-L-aspartate; NMDG: N-methyl-D-glutamate; NMLG: N-methyl-L-glutamate; NMA: N-methylaspartate; NMG: N-methylglutamate; HPLC: high-performance liquid chromatography; SAM: S-adenosyl-L-methionine; OPA: o-phthalaldehyde; LC-ESI-MS/MS: liquid chromatography-electrospray ionization-tandem mass spectrometry; FDLA: Nα-(5-fluoro-2,4-dinitrophenyl)-L-leucinamide; FDAA: Nα-(5-fluoro-2,4-dinitrophenyl)-L-alaninamide; ESI: electrospray ionization; LC-ESI-MS: liquid chromatography-electrospray ionization-mass spectrometry; MS/MS: tandem mass spectrometry.


Assuntos
Ácido Aspártico/química , Bivalves/metabolismo , Cromatografia Líquida/métodos , Metiltransferases/análise , Espectrometria de Massas por Ionização por Electrospray/métodos , Espectrometria de Massas em Tandem/métodos , Animais , Metiltransferases/química
5.
Sci Rep ; 9(1): 11948, 2019 08 16.
Artigo em Inglês | MEDLINE | ID: mdl-31420577

RESUMO

D-Amino acid oxidase (DAAO) is a valuable flavoenzyme capable of being used in various practical applications, such as in determining D-amino acids and producing a material for semisynthetic cephalosporins, requiring higher thermal stability, higher catalytic activity, and broad substrate specificity. In this study, we isolated the thermophilic fungus Rasamsonia emersonii strain YA, which can grow on several D-amino acids as the sole nitrogen source, from a compost and characterized DAAO (ReDAAO) of the fungus. ReDAAO expressed in Escherichia coli exhibited significant oxidase activity against various neutral and basic D-amino acids, in particular hydrophobic D-amino acids. In addition, the enzyme also significantly acted on cephalosporin C, a starting material for semisynthetic antibiotics, and D-Glu, a general substrate for D-aspartate oxidase but not for DAAO, showing its unique and practically useful substrate specificity. The apparent kcat and Km values of the enzyme toward good substrates were comparable to those of higher catalytic fungal DAAOs, and the thermal stability (T50 value of ~60 °C) was comparable to that of a thermophilic bacterial DAAO and significantly higher than that of other eukaryotic DAAOs. These results highlight the great potential of ReDAAO for use in practical applications.


Assuntos
Ascomicetos/enzimologia , Cefalosporinas/química , D-Aminoácido Oxidase/química , Proteínas Fúngicas/química , Sequência de Aminoácidos , Ascomicetos/química , Ácido Aspártico/química , Ácido Aspártico/metabolismo , Domínio Catalítico , Cefalosporinas/metabolismo , Clonagem Molecular , D-Aminoácido Oxidase/genética , D-Aminoácido Oxidase/isolamento & purificação , D-Aminoácido Oxidase/metabolismo , Ensaios Enzimáticos , Estabilidade Enzimática , Escherichia coli/genética , Escherichia coli/metabolismo , Proteínas Fúngicas/genética , Proteínas Fúngicas/isolamento & purificação , Proteínas Fúngicas/metabolismo , Expressão Gênica , Vetores Genéticos/química , Vetores Genéticos/metabolismo , Ácido Glutâmico/química , Ácido Glutâmico/metabolismo , Interações Hidrofóbicas e Hidrofílicas , Cinética , Ligação Proteica , Domínios e Motivos de Interação entre Proteínas , Estrutura Secundária de Proteína , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Alinhamento de Sequência , Homologia de Sequência de Aminoácidos , Especificidade por Substrato
6.
Appl Microbiol Biotechnol ; 103(10): 4053-4064, 2019 May.
Artigo em Inglês | MEDLINE | ID: mdl-30937498

RESUMO

D-Aspartate oxidase (DDO) is a valuable enzyme that can be utilized in the determination of acidic D-amino acids and the optical resolution of a racemic mixture of acidic amino acids, which require its higher stability, higher catalytic activity, and higher substrate-binding affinity. In the present study, we identified DDO gene (TdDDO) of a thermophilic fungus, Thermomyces dupontii, and characterized the recombinant enzyme expressed in Escherichia coli. In addition, we generated a variant that has a higher substrate-binding affinity. The recombinant TdDDO expressed in E. coli exhibited oxidase activity toward acidic D-amino acids and a neutral D-amino acid, D-Gln, with the highest activity toward D-Glu. The Km and kcat values for D-Glu were 2.16 mM and 217 s-1, respectively. The enzyme had an optimum pH and temperature 8.0 and 60 °C, respectively, and was stable between pH 5.0 and 10.0, with a T50 of ca. 51 °C, which was much higher than that in DDOs from other origins. Enzyme stability decreased following a decrease in protein concentration, and externally added FAD could not repress the destabilization. The mutation of Phe248, potentially located in the active site of TdDDO, to Tyr residue, conserved in DDOs and D-amino acid oxidases, markedly increased substrate-binding affinity. The results showed the great potential of TdDDO and the variant for practical applications.


Assuntos
Ácido Aspártico/metabolismo , D-Aspartato Oxidase/metabolismo , Eurotiales/enzimologia , Clonagem Molecular , D-Aspartato Oxidase/química , D-Aspartato Oxidase/genética , Estabilidade Enzimática , Escherichia coli/genética , Escherichia coli/metabolismo , Expressão Gênica , Concentração de Íons de Hidrogênio , Cinética , Proteínas Mutantes/química , Proteínas Mutantes/genética , Proteínas Mutantes/metabolismo , Ligação Proteica , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Temperatura
7.
Genome Announc ; 6(11)2018 Mar 15.
Artigo em Inglês | MEDLINE | ID: mdl-29545290

RESUMO

Vanrija humicola (Cryptococcus humicola) strain UJ1 is a basidiomycetous yeast that produces d-aspartate oxidase, which is highly specific to d-aspartate. Here, we report the 22.6-Mb draft genome sequence of V. humicola strain UJ1, which comprises 22.6 Mb in 46 scaffolds, with an overall G+C content of 62.82%, comprising 46 scaffolds with an N50 of 1.34 Mb.

8.
Acta Crystallogr F Struct Biol Commun ; 73(Pt 12): 651-656, 2017 Dec 01.
Artigo em Inglês | MEDLINE | ID: mdl-29199985

RESUMO

Aspartate racemase (AspR) is a pyridoxal 5'-phosphate (PLP)-dependent enzyme that is responsible for D-aspartate biosynthesis in vivo. To the best of our knowledge, this is the first study to report an X-ray crystal structure of a PLP-dependent AspR, which was resolved at 1.90 Šresolution. The AspR derived from the bivalve mollusc Scapharca broughtonii (SbAspR) is a type II PLP-dependent enzyme that is similar to serine racemase (SR) in that SbAspR catalyzes both racemization and dehydration. Structural comparison of SbAspR and SR shows a similar arrangement of the active-site residues and nucleotide-binding site, but a different orientation of the metal-binding site. Superposition of the structures of SbAspR and of rat SR bound to the inhibitor malonate reveals that Arg140 recognizes the ß-carboxyl group of the substrate aspartate in SbAspR. It is hypothesized that the aromatic proline interaction between the domains, which favours the closed form of SbAspR, influences the arrangement of Arg140 at the active site.


Assuntos
Isomerases de Aminoácido/química , Scapharca/enzimologia , Isomerases de Aminoácido/genética , Isomerases de Aminoácido/metabolismo , Animais , Sítios de Ligação , Domínio Catalítico , Cristalografia por Raios X , Modelos Moleculares , Conformação Proteica , Fosfato de Piridoxal/química
9.
Sci Rep ; 7(1): 2842, 2017 06 06.
Artigo em Inglês | MEDLINE | ID: mdl-28588250

RESUMO

Sphingobium sp. strain TCM1 can degrade tris(2-chloroethyl) phosphate (TCEP) to inorganic phosphate and 2-chloroethanol. A phosphotriesterase (PTE), phosphodiesterase (PDE) and phosphomonoesterase (PME) are believed to be involved in the degradation of TCEP. The PTE and PME that respectively catalyze the first and third steps of TCEP degradation in TCM1 have been identified. However, no information has been reported on a PDE catalyzing the second step. In this study, we identified, purified, and characterized a PDE capable of hydrolyzing haloalkyl phosphate diesters. The final preparation of the enzyme had a specific activity of 29 µmol min-1 mg-1 with bis(p-nitrophenyl) phosphate (BpNPP) as the substrate. It also possessed low PME activity with p-nitrophenyl phosphate (pNPP) as substrate. The catalytic efficiency (k cat/K m) with BpNPP was significantly higher than that with pNPP, indicating that the enzyme prefers the organophosphorus diester to the monoester. The enzyme degraded bis(2,3-dibromopropyl) phosphate, bis(1,3-dichloro-2-propyl) phosphate and bis(2-chloroethyl) phosphate, suggesting that it is involved in the metabolism of haloalkyl organophosphorus triesters. The primary structure of the PDE from TCM1 is distinct from those of typical PDE family members and the enzyme belongs to the polymerase and histidinol phosphatase superfamily.


Assuntos
Hidrolases de Triester Fosfórico/metabolismo , Sphingomonadaceae/metabolismo , Sequência de Aminoácidos , Concentração de Íons de Hidrogênio , Hidrólise , Fosfatos/metabolismo , Hidrolases de Triester Fosfórico/química , Temperatura
10.
Appl Microbiol Biotechnol ; 101(5): 2153-2162, 2017 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-27866252

RESUMO

Tris(2-chloroethyl) phosphate (TCEP) is a haloalkyl phosphate flame retardant and plasticizer that has been recognized as a global environmental contaminant. Sphingobium sp. strain TCM1 can utilize TCEP as a phosphorus source. To identify the phosphomonoesterase involved in TCEP utilization, we identified four putative alkaline phosphatase (APase) genes, named SbphoA, SbphoD1, SbphoD2, and SbphoX-II, in the genome sequence. Following expression of these genes in Escherichia coli, APase activity was confirmed for the SbphoA and SbphoX-II gene products but was not clearly observed for the SbphoD1 and SbphoD2 gene products, owing to their accumulation in inclusion bodies. The single deletion of either SbphoA or SbphoX-II retarded the growth and reduced the APase activity of strain TCM1 cells on medium containing TCEP as the sole phosphorus source; these changes were more marked in cells with the SbphoX-II gene deletion. In contrast, the deletion of either SbphoD1 or SbphoD2 had no effect on cell growth or APase activity. The double deletion of SbphoA and SbphoX-II resulted in the complete loss of cell growth on TCEP. These results show that SbPhoA and SbPhoX-II are involved in the utilization of TCEP as a phosphorus source and that SbPhoX-II is the major phosphomonoesterase involved in TCEP utilization.


Assuntos
Fosfatase Alcalina/genética , Biodegradação Ambiental , Retardadores de Chama/metabolismo , Organofosfatos/metabolismo , Plastificantes/metabolismo , Sphingomonadaceae/genética , Fosfatase Alcalina/metabolismo , Proliferação de Células/genética , Deleção de Genes , Organofosfatos/química , Sphingomonadaceae/metabolismo
11.
Genome Announc ; 4(4)2016 Jul 14.
Artigo em Inglês | MEDLINE | ID: mdl-27417843

RESUMO

Sphingobium sp. strain TCM1 and Sphingomonas sp. strain TDK1 are haloalkyl phosphate flame retardant- and plasticizer-degrading bacteria. We report here the draft genome sequences of these strains to provide insights into the molecular mechanism underlying their degradation ability.

12.
J Biochem ; 159(3): 371-8, 2016 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-26519738

RESUMO

D-Aspartate oxidase (DDO) catalyzes the oxidative deamination of acidic D-amino acids, whereas neutral and basic D-amino acids are substrates of D-amino acid oxidase (DAO). DDO of the yeast Cryptococcus humicola (ChDDO) has much higher substrate specificity to D-aspartate, but the structural features that confer this specificity have not been elucidated. A three-dimensional model of ChDDO suggested that a histidine residue (His56) in the active site might be involved in the unique substrate specificity, possibly through the interaction with the substrate side chain in the active site. His56 mutants with several different amino acid residues (H56A, H56D, H56F, H56K and H56N) exhibited no significant activity toward acidic D-amino acids, but H56A and H56N mutants gained the ability to utilize neutral D-amino acids as substrates, such as D-methionine, D-phenylalanine and D-glutamine, showing the conversion of ChDDO to DAO by these mutations. This conversion was also demonstrated by the sensitivity of these mutants to competitive inhibitors of DAO. These results and kinetic properties of the mutants show that His56 is involved in the substrate specificity of ChDDO and possibly plays a role in the higher substrate specificity toward D-aspartate.


Assuntos
Cryptococcus/enzimologia , D-Aspartato Oxidase/química , Proteínas Fúngicas/química , Histidina/química , Aminoácidos Neutros/química , Domínio Catalítico , D-Aspartato Oxidase/genética , Ácido D-Aspártico/química , Desaminação , Proteínas Fúngicas/genética , Histidina/genética , Cinética , Modelos Moleculares , Mutagênese Sítio-Dirigida , Especificidade por Substrato/genética
13.
Bioengineered ; 6(4): 237-41, 2015.
Artigo em Inglês | MEDLINE | ID: mdl-25996186

RESUMO

D-Amino acid oxidase (DAO) is a flavin enzyme that catalyzes the oxidative deamination of d-amino acids. This enzyme has been studied extensively both biochemically and structurally as a model for the oxidase-dehydrogenase class of flavoproteins. This enzyme also has various applications, such as the determination of d-amino acids and production of building blocks for a number of pharmaceuticals. DAO has been found mainly in eukaryotic organisms and has been suggested to play a significant role in various cellular processes, one of which includes neurotransmission in the human brain. In contrast, this enzyme has not been identified in prokaryotic organisms. Some studies have recently identified and characterized DAO enzyme in some actinobacteria. In addition, a genome database search reveals a wide distribution of DAO homologous genes in this bacterial group. The bacterial DAOs characterized so far have certain distinct properties in comparison to eukaryotic DAOs. These enzymes also exhibit some important applicable properties, suggesting that bacteria could be used as a source for obtaining novel and useful DAOs. The physiological function of bacterial DAO have been proposed to include the degradation of non-canonical d-amino acids released from cell wall, but is still largely unknown and need to be studied in depth.


Assuntos
Aminoácidos/metabolismo , Proteínas de Bactérias/metabolismo , D-Aminoácido Oxidase/metabolismo , Flavoproteínas/metabolismo , Proteínas do Tecido Nervoso/química , Aminoácidos/química , Bactérias/enzimologia , Proteínas de Bactérias/química , Biotecnologia , Encéfalo/metabolismo , D-Aminoácido Oxidase/química , Estabilidade Enzimática , Flavoproteínas/química , Humanos , Cinética , Proteínas do Tecido Nervoso/metabolismo , Proteínas Recombinantes/química , Proteínas Recombinantes/metabolismo , Especificidade da Espécie , Especificidade por Substrato , Transmissão Sináptica/fisiologia
14.
Appl Environ Microbiol ; 80(23): 7219-29, 2014 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-25217016

RESUMO

d-Amino acid oxidase (DAO) is a biotechnologically attractive enzyme that can be used in a variety of applications, but its utility is limited by its relatively poor stability. A search of a bacterial genome database revealed a gene encoding a protein homologous to DAO in the thermophilic bacterium Rubrobacter xylanophilus (RxDAO). The recombinant protein expressed in Escherichia coli was a monomeric protein containing noncovalently bound flavin adenine dinucleotide as a cofactor. This protein exhibited oxidase activity against neutral and basic d-amino acids and was significantly inhibited by a DAO inhibitor, benzoate, but not by any of the tested d-aspartate oxidase (DDO) inhibitors, thus indicating that the protein is DAO. RxDAO exhibited higher activities and affinities toward branched-chain d-amino acids, with the highest specific activity toward d-valine and catalytic efficiency (kcat/Km) toward d-leucine. Substrate inhibition was observed in the case of d-tyrosine. The enzyme had an optimum pH range and temperature of pH 7.5 to 10 and 65°C, respectively, and was stable between pH 5.0 and pH 8.0, with a T50 (the temperature at which 50% of the initial enzymatic activity is lost) of 64°C. No loss of enzyme activity was observed after a 1-week incubation period at 30°C. This enzyme was markedly inactivated by phenylmethylsulfonyl fluoride but not by thiol-modifying reagents and diethyl pyrocarbonate, which are known to inhibit certain DAOs. These results demonstrated that RxDAO is a highly stable DAO and suggested that this enzyme may be valuable for practical applications, such as the determination and quantification of branched-chain d-amino acids, and as a scaffold to generate a novel DAO via protein engineering.


Assuntos
Actinobacteria/enzimologia , D-Aminoácido Oxidase/química , D-Aminoácido Oxidase/metabolismo , Actinobacteria/genética , Benzoatos/metabolismo , Clonagem Molecular , Coenzimas/metabolismo , D-Aminoácido Oxidase/genética , D-Aminoácido Oxidase/isolamento & purificação , Inibidores Enzimáticos/metabolismo , Estabilidade Enzimática , Escherichia coli/genética , Escherichia coli/metabolismo , Flavina-Adenina Dinucleotídeo/metabolismo , Expressão Gênica , Concentração de Íons de Hidrogênio , Cinética , Fluoreto de Fenilmetilsulfonil/metabolismo , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Proteínas Recombinantes/isolamento & purificação , Proteínas Recombinantes/metabolismo , Especificidade por Substrato , Temperatura
15.
Appl Environ Microbiol ; 80(18): 5866-73, 2014 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-25038092

RESUMO

Phosphotriesterases catalyze the first step of organophosphorus triester degradation. The bacterial phosphotriesterases purified and characterized to date hydrolyze mainly aryl dialkyl phosphates, such as parathion, paraoxon, and chlorpyrifos. In this study, we purified and cloned two novel phosphotriesterases from Sphingomonas sp. strain TDK1 and Sphingobium sp. strain TCM1 that hydrolyze tri(haloalkyl)phosphates, and we named these enzymes haloalkylphosphorus hydrolases (TDK-HAD and TCM-HAD, respectively). Both HADs are monomeric proteins with molecular masses of 59.6 (TDK-HAD) and 58.4 kDa (TCM-HAD). The enzyme activities were affected by the addition of divalent cations, and inductively coupled plasma mass spectrometry analysis suggested that zinc is a native cofactor for HADs. These enzymes hydrolyzed not only chlorinated organophosphates but also a brominated organophosphate [tris(2,3-dibromopropyl) phosphate], as well as triaryl phosphates (tricresyl and triphenyl phosphates). Paraoxon-methyl and paraoxon were efficiently degraded by TCM-HAD, whereas TDK-HAD showed weak activity toward these substrates. Dichlorvos was degraded only by TCM-HAD. The enzymes displayed weak or no activity against trialkyl phosphates and organophosphorothioates. The TCM-HAD and TDK-HAD genes were cloned and found to encode proteins of 583 and 574 amino acid residues, respectively. The primary structures of TCM-HAD and TDK-HAD were very similar, and the enzymes also shared sequence similarity with fenitrothion hydrolase (FedA) of Burkholderia sp. strain NF100 and organophosphorus hydrolase (OphB) of Burkholderia sp. strain JBA3. However, the substrate specificities and quaternary structures of the HADs were largely different from those of FedA and OphB. These results show that HADs from sphingomonads are novel members of the bacterial phosphotriesterase family.


Assuntos
Hidrolases de Triester Fosfórico/isolamento & purificação , Sphingomonadaceae/enzimologia , Sequência de Aminoácidos , Clonagem Molecular , Coenzimas/análise , Hidrocarbonetos Bromados/metabolismo , Hidrocarbonetos Clorados/metabolismo , Hidrólise , Espectrometria de Massas , Dados de Sequência Molecular , Peso Molecular , Organofosfatos/metabolismo , Hidrolases de Triester Fosfórico/química , Conformação Proteica , Análise de Sequência de DNA , Homologia de Sequência , Especificidade por Substrato , Zinco/análise
16.
Curr Microbiol ; 65(6): 764-9, 2012 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-22986818

RESUMO

We investigated D-amino acid oxidase (DAO) induction in the popular model yeast Schizosaccharomyces pombe. The product of the putative DAO gene of the yeast expressed in E. coli displayed oxidase activity to neutral and basic D-amino acids, but not to an L-amino acid or acidic D-amino acids, showing that the putative DAO gene encodes catalytically active DAO. DAO activity was weakly detected in yeast cells grown on a culture medium without D-amino acid, and was approximately doubled by adding D-alanine. The elimination of ammonium chloride from culture medium induced activity by up to eight-fold. L-Alanine also induced the activity, but only by about half of that induced by D-alanine. The induction by D-alanine reached a maximum level at 2 h cultivation; it remained roughly constant until cell growth reached a stationary phase. The best inducer was D-alanine, followed by D-proline and then D-serine. Not effective were N-carbamoyl-D,L-alanine (a better inducer of DAO than D-alanine in the yeast Trigonopsis variabilis), and both basic and acidic D-amino acids. These results showed that S. pombe DAO could be a suitable model for analyzing the regulation of DAO expression in eukaryotic organisms.


Assuntos
Aminoácidos/farmacologia , D-Aminoácido Oxidase/metabolismo , Regulação Enzimológica da Expressão Gênica , Schizosaccharomyces/enzimologia , Alanina/farmacologia , Sequência de Aminoácidos , Aminoácidos/metabolismo , Animais , Meios de Cultura , D-Aminoácido Oxidase/química , D-Aminoácido Oxidase/genética , Escherichia coli/enzimologia , Escherichia coli/genética , Proteínas Fúngicas/genética , Proteínas Fúngicas/metabolismo , Regulação Fúngica da Expressão Gênica , Dados de Sequência Molecular , Schizosaccharomyces/genética , Schizosaccharomyces/crescimento & desenvolvimento
17.
J Biosci Bioeng ; 114(3): 306-11, 2012 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-22578591

RESUMO

Tris(2-chloroethyl) phosphate (TCEP), a flame retardant, is recently regarded as a potentially toxic and persistent environmental contaminant. We previously isolated TCEP-degrading bacterium, Sphingobium sp. strain TCM1, which, however, produced a toxic metabolite: 2-chloroethanol (2-CE). This study was undertaken to develop a detoxification technique of TCEP using strain TCM1 with a 2-CE-degrading bacterium: Xanthobacter autotrophicus strain GJ10. TCEP degradation by strain TCM1-resting cells was thermally stable for 30 min at 30 °C. It was optimal at 30 °C and at pH 8.5. In the optimum condition, TCM1 cells up to a final cell density of 0.8 at OD(660) in the reaction mixture were unable to hydrolyze the phosphotriester bonds of 10 µM TCEP completely. The addition of 50 µM Co(2+) to reaction mixture enhanced the hydrolysis and caused the complete hydrolysis at the cell density of 0.8. Strain GJ10 resting cells degraded 2-CE only slightly, which might be attributable to lack of coenzyme regeneration of enzymes involved in the degradation. In contrast, the growing cells degraded approximately 180 µM of 2-CE within 24 h. Based on these results, we designed a two-step TCEP detoxification reaction consisting of TCEP hydrolysis to 2-CE by strain TCM1-resting cells and the following degradation of the resulting 2-CE by strain GJ10-growing cells. The combined reaction completely detoxified 10 µM TCEP, and thus opens a way to microbial detoxification of the potential toxic, persistent organophosphorus compound.


Assuntos
Organofosfatos/metabolismo , Sphingomonadaceae/metabolismo , Xanthobacter/metabolismo , Retardadores de Chama/metabolismo , Concentração de Íons de Hidrogênio , Hidrólise , Inativação Metabólica , Temperatura , Xanthobacter/enzimologia
18.
J Biosci Bioeng ; 113(1): 79-83, 2012 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-21956155

RESUMO

Tris(1,3-dichloro-2-propyl) phosphate (TDCPP), a flame retardant, is regarded as a potentially toxic and persistent environmental contaminant. We previously isolated a TDCPP-degrading bacterium, Sphingobium sp. strain TCM1, which, however, produced a toxic metabolite: 1,3-dichloro-2-propanol (1,3-DCP). This study was undertaken to develop a technique for complete TDCPP detoxification using strain TCM1 with a 1,3-DCP-degrading bacterium, Arthrobacter sp. strain PY1. For efficient detoxification, we designed a resting cell system and examined the effect of freezing and lyophilization treatments for preparation of their resting cells. Results show that treatments had no marked adverse effect on their activities. The TDCPP dephosphorylation by TCM1 resting cells was optimal at 30°C and pH 8.5. Also, 1,3-DCP dehalogenation by strain PY1 resting cells was optimal at 35°C and pH 9.5. Under those respective conditions, the activities were 2.48 µmol h⁻¹·OD660⁻¹ for TDCPP and 0.95 µmol h⁻¹·OD660⁻¹ for 1,3-DCP. Based on these results, we set the reaction temperature to 30°C and pH to 9.0. Then we examined the detoxification of 50 µM TDCPP using mixed resting cells at a final OD(660) of 0.05 for strain TCM1 and 0.2 for strain PY1. In these conditions, TDCPP was eliminated after 1h, but some of the resulting 1,3-DCP remained at a constant level. The increase in strain PY1 cells to a final OD660 of 4.0 decreased the TDCPP dephosphorylation rate of strain TCM1 cells but achieved complete detoxification of TDCPP during 12 h of reaction.


Assuntos
Arthrobacter/metabolismo , Retardadores de Chama/metabolismo , Organofosfatos/metabolismo , Sphingomonadaceae/metabolismo , alfa-Cloridrina/análogos & derivados , Biodegradação Ambiental , Temperatura Baixa , Liofilização , Halogenação , Concentração de Íons de Hidrogênio , Fosforilação , Microbiologia do Solo , alfa-Cloridrina/metabolismo
19.
J Chromatogr B Analyt Technol Biomed Life Sci ; 879(29): 3229-34, 2011 Nov 01.
Artigo em Inglês | MEDLINE | ID: mdl-21419722

RESUMO

We describe a method for the detection and quantification of D-aspartate N-methyltransferase activity. The enzyme catalyzes the S-adenosyl-L-methionine-dependent N-methylation of D-aspartate to form N-methyl-D-aspartate (NMDA). NMDA is detected directly by high-performance liquid chromatography (HPLC) of their (+)- and/or (-)-1-(9-fluorenyl)ethyl chloroformate fluorescent derivatives. The NMDA production in the assay mixture is linearly proportional to the incubation time and the amount of tissue homogenate. Using a 10 min incubation time, the method allows detection of the enzyme activity below 10 fmol/min. It can be used to analyze kinetic behavior and to quantify the enzyme from a wide variety of organisms.


Assuntos
Cromatografia Líquida de Alta Pressão/métodos , Ensaios Enzimáticos/métodos , Metiltransferases/metabolismo , N-Metilaspartato/análise , Estrelas-do-Mar/enzimologia , Animais , Cinética , Metiltransferases/análise , N-Metilaspartato/metabolismo , Estrelas-do-Mar/metabolismo
20.
Appl Microbiol Biotechnol ; 89(4): 1213-21, 2011 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-21069314

RESUMO

The yeast Cryptococcus humicola has several attractive properties for practical applications such as in bioremediation and as a source of industrially useful enzymes and compounds. We have developed an autonomously replicating vector of C. humicola to improve its properties. We initially tried to isolate an autonomously replicating sequence (ARS) from genomic DNA by transformation using a genomic DNA library. We obtained a candidate plasmid vector harboring an ARS that gave high transformation efficiency. Southern blot analysis of transformants revealed the autonomous replication of the introduced vector in some transformants. However, the vector was not only variously altered in length but also linearized. PCR analysis indicated that a telomere-like sequence repeat (TTAGGGGG)( n ) was added to the termini of linearized vector. Thus, we constructed an autonomously replicating linear vector having ten repeats of the telomere-like sequence at both ends. The vector transformed the yeast cells with high transformation efficiency (3230 CFU/µg of DNA), which was approximately 25-fold higher than that of a control vector lacking the repeats, and was autonomously replicated at a roughly constant size. The copy number was estimated to be less than one copy, and Ura(+) mitotic stability varied widely among the transformants and was related to plasmid segregation efficiency.


Assuntos
Cryptococcus/genética , Replicação do DNA , Vetores Genéticos , Dosagem de Genes , Engenharia Genética/métodos , Genética Microbiana/métodos , Sequências Repetitivas de Ácido Nucleico , Telômero , Transformação Genética
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