Composting Reduces the Vitality of H9N2 in Poultry Manure and EMCV in Pig Manure Allowing for an Environmentally Friendly Use of These Animal Wastes: A Preliminary Study.

In our study, we monitored the inactivation of two important viruses that are critical in animal husbandry throughout the world. To evaluate the influence of the composting process on inactivation of avian influenza virus (H9N2) in poultry manure compost (PMC) and Encephalomyocarditis virus (EMCV) in pig (swine) manure compost (SMC), the H9N2 and EMCV were injected in dialysis cassettes and buried in two different manure compost piles of poultry and pig manure, respectively. The highest temperature achieved in the PMC and SMC piles during the test period were 75 °C and 73.5 °C, respectively. At the completion of the composting for 168 h, inactivation effect appeared to be more sensitive in H9N2 than EMCV. The vitality of H9N2 decreased by 6.25±0.35 log10TCID50/mL to 0.0 log10TCID50/mL within 1 h of the composting. The vitality of EMCV decreased from 7.75±0.35 log10TCID50/mL to 1.50 log10TCID50/mL within 24 h of starting the composting process. However, the activation of EMCV was not decreased (from 7.75±0.35 to 7.50±0.71 log10TCID50/mL) in the control treatment (not inserted in composts) after 168h, while the activation of H9N2 in dialysis cassettes was significantly decreased (from 6.25±0.35 log10TCID50/mL to 2.00±0.6 log10TCID50/mL). Our study demonstrated the effectiveness of the composting treatment in inactivating the viruses studied, which was not the case with air treatment.

Comparison of bacterial communities in leachate from decomposing bovine carcasses.

OBJECTIVE: Burial is associated with environmental effects such as the contamination of ground or surface water with biological materials generated during the decomposition process. Therefore, bacterial communities in leachates originating from the decomposing bovine carcasses were investigated. METHODS: To understand the process of bovine (Hanwoo) carcass decomposition, we simulated burial using a lab-scale reactor with a volume of 5.15 m3. Leachate samples from 3 carcasses were collected using a peristaltic pump once a month for a period of 5 months, and bacterial communities in samples were identified by pyrosequencing of the 16S rRNA gene. RESULTS: We obtained a total of 110,442 reads from the triplicate samples of various sampling time points (total of 15 samples), and found that the phylum Firmicutes was dominant at most sampling times. Differences in the bacterial communities at the various time points were observed among the triplicate samples. The bacterial communities sampled at 4 months showed the most different compositions. The genera Pseudomonas and Psychrobacter in the phylum Proteobacteria were dominant in all of the samples obtained after 3 months. Bacillaceae, Clostridium, and Clostridiales were found to be predominant after 4 months in the leachate from one carcass, whereas Planococcaceae was found to be a dominant in samples obtained at the first and second months from the other two carcasses. The results showed that potentially pathogenic microbes such as Clostridium derived from bovine leachate could dominate the soil environment of a burial site. CONCLUSION: Our results indicated that the composition of bacterial communities in leachates of a decomposing bovine shifted continuously during the experimental period, with significant changes detected after 4 months of burial.

High-throughput nucleotide sequence analysis of diverse bacterial communities in leachates of decomposing pig carcasses.

The leachate generated by the decomposition of animal carcass has been implicated as an environmental contaminant surrounding the burial site. High-throughput nucleotide sequencing was conducted to investigate the bacterial communities in leachates from the decomposition of pig carcasses. We acquired 51,230 reads from six different samples (1, 2, 3, 4, 6 and 14 week-old carcasses) and found that sequences representing the phylum Firmicutes predominated. The diversity of bacterial 16S rRNA gene sequences in the leachate was the highest at 6 weeks, in contrast to those at 2 and 14 weeks. The relative abundance of Firmicutes was reduced, while the proportion of Bacteroidetes and Proteobacteria increased from 3-6 weeks. The representation of phyla was restored after 14 weeks. However, the community structures between the samples taken at 1-2 and 14 weeks differed at the bacterial classification level. The trend in pH was similar to the changes seen in bacterial communities, indicating that the pH of the leachate could be related to the shift in the microbial community. The results indicate that the composition of bacterial communities in leachates of decomposing pig carcasses shifted continuously during the study period and might be influenced by the burial site.

Field scale evaluation of volatile organic compound production inside biosecure swine mortality composts.

Emergency mortality composting associated with a disease outbreak has special requirements to reduce the risks of pathogen survival and disease transmission. The most important requirements are to cover mortalities with biosecure barriers and avoid turning compost piles until the pathogens are inactivated. Temperature is the most commonly used parameter for assessing success of a biosecure composting process, but a decline in compost core temperature does not necessarily signify completion of the degradation process. In this study, gas concentrations of volatile organic compounds (VOCs) produced inside biosecure swine mortality composting units filled with six different cover/plant materials were monitored to test the state and completion of the process. Among the 55 compounds identified, dimethyl disulfide, dimethyl trisulfide, and pyrimidine were found to be marker compounds of the process. Temperature at the end of eight weeks was not found as an indicator of swine carcass degradation. However, gas concentrations of the marker compounds at the end of eight weeks were found to be related to carcass degradation. The highest gas concentrations of the marker compounds were measured for the test units with the lowest degradation (highest respiration rates). Dimethyl disulfide was found to be the most robust marker compound as it was detected from all composting units in the eighth week of the trial. Concentration of dimethyl disulfide decreased from a range of 290-4340 ppmv to 6-160 ppbv. Dimethyl trisulfide concentrations decreased to a range of below detection limit to 430 ppbv while pyrimidine concentrations decreased to a range of below detection limit to 13 ppbv.

Laboratory scale evaluation of volatile organic compound emissions as indication of swine carcass degradation inside biosecure composting units.

Biosecure livestock mortality composting systems have been used to dispose of diseased livestock mortalities. In those types of system, visual inspection of carcass degradation is not possible and monitoring VOCs (volatile organic compounds) released by carcasses is a new approach to assess progress of the composting process. In this study, field-scale livestock mortality composting systems were simulated and a laboratory scale composting system with aerobic and anaerobic test units was designed to collect VOC samples from the headspace of decaying plant materials (70 g dry weight) and swine tissues (70 g dry weight) at controlled operating temperatures. Headspace samples were collected with SPME (solid phase microextraction) and analyzed by a GC-MS (gas chromatography-mass spectrometry) system. Among the 43 VOCs identified, dimethyl disulfide, dimethyl trisulfide, and pyrimidine were found to be marker compounds of the mortality composting process. These compounds were only found to be produced by decaying swine tissues but not produced by decaying plant materials. The highest marker VOC emissions were measured during the first three weeks, and VOCs were not detected after the 6th week of the process, which indicates degradation processes were completed and compost materials microbially stabilized (no additional VOC production). Results of respiration tests also showed that compost materials were stabilized. Results of this study can be useful for field-scale composting operations but more studies are needed to show the effects of size and aeration rate of the composting units.

Air sampling and analysis method for volatile organic compounds (VOCs) related to field-scale mortality composting operations.

In biosecure composting, animal mortalities are so completely isolated during the degradation process that visual inspection cannot be used to monitor progress or the process status. One novel approach is to monitor the volatile organic compounds (VOCs) released by decaying mortalities and to use them as biomarkers of the process status. A new method was developed to quantitatively analyze potential biomarkers--dimethyl disulfide, dimethyl trisulfide, pyrimidine, acetic acid, propanoic acid, 3-methylbutanoic acid, pentanoic acid, and hexanoic acid--from field-scale biosecure mortality composting units. This method was based on collection of air samples from the inside of biosecure composting units using portable pumps and solid phase microextraction (SPME). Among four SPME fiber coatings, 85 microm CAR/PDMS was shown to extract the greatest amount of target analytes during a 1 h sampling time. The calibration curves had high correlation coefficients, ranging from 96 to 99%. Differences between the theoretical concentrations and those estimated from the calibration curves ranged from 1.47 to 20.96%. Method detection limits of the biomarkers were between 11 pptv and 572 ppbv. The applicability of the prepared calibration curves was tested for air samples drawn from field-scale swine mortality composting test units. Results show that the prepared calibration curves were applicable to the concentration ranges of potential biomaker compounds in a biosecure animal mortality composting unit.