ExtSpecR: An R Package and Tool for Extracting Tree Spectra from UAV-Based Remote Sensing.

The development of unmanned aerial vehicle (UAV) remote sensing has been increasingly applied in forestry for high-throughput and rapid acquisition of tree phenomics traits for various research areas. However, the detection of individual trees and the extraction of their spectral data remain a challenge, often requiring manual annotation. Although several software-based solutions have been developed, they are far from being widely adopted. This paper presents ExtSpecR, an open-source tool for spectral extraction of a single tree in forestry with an easy-to-use interactive web application. ExtSpecR reduces the time required for single tree detection and annotation and simplifies the entire process of spectral and spatial feature extraction from UAV-based imagery. In addition, ExtSpecR provides several functionalities with interactive dashboards that allow users to maximize the quality of information extracted from UAV data. ExtSpecR can promote the practical use of UAV remote sensing data among forest ecology and tree breeding researchers and help them to further understand the relationships between tree growth and its physiological traits.

A critical review of social media research in sensory-consumer science.

The collection and analysis of digital data from social media is a rapidly growing methodology in sensory-consumer science, with a wide range of applications for research studying consumer attitudes, preferences, and sensory responses to food. The aim of this review article was to critically evaluate the potential of social media research in sensory-consumer science with a focus on advantages and disadvantages. This review began with an exploration into different sources of social media data and the process by which data from social media is collected, cleaned, and analyzed through natural language processing for sensory-consumer research. It then investigated in detail the differences between social media-based and conventional methodologies, in terms of context, sources of bias, the size of data sets, measurement differences, and ethics. Findings showed participant biases are more difficult to control using social media approaches, and precision is inferior to conventional methods. However, findings also showed social media methodologies may have other advantages including an increased ability to investigate trends over time and easier access to cross-cultural or global insights. Greater research in this space will identify when social media can best function as an alternative to conventional methods, and/or provide valuable complementary information.

Hyperspectral imaging and deep learning for quantification of Clostridium sporogenes spores in food products using 1D- convolutional neural networks and random forest model.

Clostridium sporogenes spores are used as surrogates for Clostridium botulinum, to verify thermal exposure and lethality in sterilization regimes by food industries. Conventional methods to detect spores are time-consuming and labour intensive. The objectives of this study were to evaluate the feasibility of using hyperspectral imaging (HSI) and deep learning approaches, firstly to identify dead and live forms of C. sporogenes spores and secondly, to estimate the concentration of spores on culture media plates and ready-to-eat mashed potato (food matrix). C. sporogenes spores were inoculated by either spread plating or drop plating on sheep blood agar (SBA) and tryptic soy agar (TSA) plates and by spread plating on the surface of mashed potato. Reflectance in the spectral range of 547-1701 nm from the region of interest was used for principal component analysis (PCA). PCA was successful in distinguishing dead and live spores and different levels of inoculum (102 to 106 CFU/ml) on both TSA and SBA plates, however, was not efficient on the mashed potato (food matrix). Hence, deep learning classification frameworks namely 1D- convolutional neural networks (CNN) and random forest (RF) model were used. CNN model outperformed the RF model and the accuracy for quantification of spores was improved by 4% and 8% in the presence and absence, respectively of dead spores. The screening system used in this study was a combination of HSI and deep learning modelling, which resulted in an overall accuracy of 90-94% when the dead/inactivated spores were present and absent, respectively. The only discrepancy detected was during the prediction of samples with low inoculum levels (<102 CFU/ml). In summary, it was evident that HSI in combination with a deep learning approach showed immense potential as a tool to detect and quantify spores on nutrient media as well as on specific food matrix (mashed potato). However, the presence of dead spores in any sample is postulated to affect the accuracy and would need replicates and confirmatory assays.

Identification of Cold Spots Using Non-Destructive Hyperspectral Imaging Technology in Model Food Processed by Coaxially Induced Microwave Pasteurization and Sterilization.

The model food in this study known as mashed potato consisted of ribose (1.0%) and lysine (0.5%) to induce browning via Maillard reaction products. Mashed potato was processed by Coaxially Induced Microwave Pasteurization and Sterilization (CiMPAS) regime to generate an F0 of 6-8 min and analysis of the post-processed food was done in two ways, which included by measuring the color changes and using hyperspectral data acquisition. For visualizing the spectra of each tray in comparison with the control sample (raw mashed-potato), the mean spectrum (i.e., mean of region of interest) of each tray, as well as the control sample, was extracted and then fed to the fitted principal component analysis model and the results coincided with those post hoc analysis of the average reflectance values. Despite the presence of a visual difference in browning, the Lightness (L) values were not significantly (p < 0.05) different to detect a cold spot among a range of 12 processed samples. At the same time, hyperspectral imaging could identify the colder trays among the 12 samples from one batch of microwave sterilization.

Identification of Weeds Based on Hyperspectral Imaging and Machine Learning.

Weeds can be major environmental and economic burdens in New Zealand. Traditional methods of weed control including manual and chemical approaches can be time consuming and costly. Some chemical herbicides may have negative environmental and human health impacts. One of the proposed important steps for providing alternatives to these traditional approaches is the automated identification and mapping of weeds. We used hyperspectral imaging data and machine learning to explore the possibility of fast, accurate and automated discrimination of weeds in pastures where ryegrass and clovers are the sown species. Hyperspectral images from two grasses (Setaria pumila [yellow bristle grass] and Stipa arundinacea [wind grass]) and two broad leaf weed species (Ranunculus acris [giant buttercup] and Cirsium arvense [Californian thistle]) were acquired and pre-processed using the standard normal variate method. We trained three classification models, namely partial least squares-discriminant analysis, support vector machine, and Multilayer Perceptron (MLP) using whole plant averaged (Av) spectra and superpixels (Sp) averaged spectra from each weed sample. All three classification models showed repeatable identification of four weeds using both Av and Sp spectra with a range of overall accuracy of 70-100%. However, MLP based on the Sp method produced the most reliable and robust prediction result (89.1% accuracy). Four significant spectral regions were found as highly informative for characterizing the four weed species and could form the basis for a rapid and efficient methodology for identifying weeds in ryegrass/clover pastures.

Chemometrics and hyperspectral imaging applied to assessment of chemical, textural and structural characteristics of meat.

Spectroscopy in the visible near-infrared spectral (Vis-NIRS) range combined with imaging techniques (hyperspectral imaging, HSI) allows assessment of chemical composition, texture, and meat structure. The use of HSI in the meat and food industry has observed a significant growth in the last decade, yet its use for assessment of meat it is not optimal yet. The application of HSI for assessment of meat is reviewed with focus on its ability to capture meat unique chemical and structural characteristics. While HSI is widely used for assessment of chemical composition, a limited number of evidences on its ability to handle the effect of different sources of variation on the assessment is found. The use of spatially resolved spectroscopy has been able to detect structural information related to animal background, muscle type, rigor process and ageing. Similarly the use of texture features seem to capture unique characteristics of meat.