Synthesis and characterization of SERS gene probe for BRCA-1 (breast cancer).

A protocol for binding cresyl fast violet (CFV), a SERS-active dye (label) containing an aromatic amino group with a modified oligomer having a carboxy derivatized thymidine moiety using carbodiimide coupling has been achieved for the first time. Covalent coupling between CFV and the oligomer has been confirmed by mass spectral analysis of the labeled oligomer. The fluorescence, SERS and absorption characteristics of the labeled product have been evaluated. The chosen oligomer contains a BRCA-1 (breast cancer) sequence, and hence has the potential for being used as a gene probe to identify BRCA-1 gene. It has high potential for being used in polymerase chain reaction (PCR) amplification, as has been performed with labeled oligonucleotide for the HIV sequence.

Application of an antibody biochip for p53 detection and cancer diagnosis.

Detection of the p53 tumor suppressor gene is important in early cancer diagnostics because alterations in the gene have been associated with carcinogenic manifestations in several tissue types in humans. We have developed an antibody-based detection instrument, the biochip, to detect the presence of the anti-p53 antibody in human serum. The design of this highly integrated detector system is based on miniaturized phototransistors having multiple optical sensing elements, amplifiers, discriminators, and logic circuitry on an IC board. The system utilizes laser excitation and fluorescence signals to detect complex formation between the p53 monoclonal antibody and the p53 antigen. Recognition antibodies are immobilized on a nylon membrane platform and incubated in solutions containing antigens labeled with Cy5, a fluorescent cyanine dye. Subsequently, this membrane is placed on the detection platform of the biochip and fluorescence signal is induced using a 632.8-nm He-Ne laser. Using this immuno-biochip, we have been able to detect binding of the p53 monoclonal antibody to the human p53 cancer protein in biological matrices. The performance of the integrated phototransistors and amplifier circuits of the biochip, previously evaluated through measurement of the signal output response for various concentrations of fluorescein-labeled molecules, have illustrated the linearity of the microchip necessary for quantitative analysis. The design of this biochip permits sensitive, selective and direct measurements of a variety of antigen-antibody formations at very low concentrations. Furthermore, the acquisitions of the qualitative and quantitative results are accomplished rapidly, in about 15 min. These features demonstrate the potential of this antibody-based biochip for simple, rapid and early biomedical diagnostics of cancer.

Electrophoretic injection bias in a microchip valving scheme.

The pinched injection strategy, implemented on microfabricated fluidic devices (microchips), was investigated for an electrophoretic injection bias. Both the sample loading and dispensing steps were found to contribute to the injection bias whereby neutral species were injected preferentially to anionic species. In the sample loading step, neutral species filled a larger volume in the cross intersection than anionic species. Similarly, in the dispensing step, a larger volume of neutral analyte was injected than anionic analyte. Up to a 27% difference in injected volumes was observed. Fluorescently labeled amino acids were used as model analytes.

Antibody-based biosensor for breast cancer with ultrasonic regeneration.

We describe a novel method and instrumental setup for regenerating antibodies immobilized on a fiberoptic probe of an immunosensor using ultrasonic irradiation with broadband imaging transducers. The instrumental setup and irradiation conditions for antibody regeneration using ultrasound are described. The results of the measurements with antibody against breast cancer antigen illustrate the effectiveness and potential of the regenerable immunosensor. A 65% removal of the antigens bound to the Mab immobilized on the fiber surface is attained after ultrasound regeneration.

Antibody-based nanoprobe for measurement of a fluorescent analyte in a single cell.

We report here the application of an antibody-based nanoprobe for in situ measurements of a single cell. The nanoprobe employs antibody-based receptors targeted to a fluorescent analyte, benzopyrene tetrol (BPT), a metabolite of the carcinogen benzo[a]pyrene (BaP) and of the BaP-DNA adduct. Detection of BPT is of great biomedical interest, since this species can serve as a biomarker for monitoring DNA damage due to BaP exposure and for possible precancer diagnosis. The measurements were performed on the rat liver epithelial clone 9 cell line, which was used as the model cell system. Before making measurements, the cells were treated with BPT. Nanoprobes were inserted into individual cells, incubated 5 min to allow antigen-antibody binding, and then removed for fluorescence detection. We determined a concentration of 9.6+/-0.2x10(-11) M for BPT in the individual cells investigated. The results demonstrate the possibility of in situ measurements inside a single cell using an antibody-based nanoprobe.

Effects of the electric field distribution on microchip valving performance.

Valving characteristics on microfluidic devices were controlled through manipulation of the electric field strengths during both the sample loading and dispensing steps. Three sample loading profiles for the constant volume valve (pinched injection) in conjunction with four dispensing schemes were investigated to study valving performance. The sample confinement profiles for the sample loading step consisted of a weakly pinched sample, a medium pinched sample, and a strongly pinched sample. Four dispensing schemes varied the electric field strengths in the sample and sample waste channels relative to the analysis channel to control the volume of the sample dispensed from the valve. The axial extent of the sample plug decreased as the electric field strengths in the sample and sample waste channels were raised relative to the analysis channel. In addition, a trade-off existed between sample plug length and sensitivity.

DNA biochip using a phototransistor integrated circuit.

This work describes the development of an integrated biosensor based on phototransistor integrated circuits (IC) for use in medical detection, DNA diagnostics, and gene mapping. The evaluation of various system components developed for an integrated biosensor microchip is discussed. Methods to develop a microarray of DNA probes on nitrocellulose substrate are discussed. The biochip device has sensors, amplifiers, discriminators, and logic circuitry on board. Integration of light-emitting diodes into the device is also possible. To achieve improved sensitivity, we have designed an IC system having each phototransistor sensing element composed of 220 phototransistor cells connected in parallel. Measurements of fluorescent-labeled DNA probe microarrays and hybridization experiments with a sequence-specific DNA probe for the human immunodeficiency virus 1 system on nitrocellulose substrates illustrate the usefulness and potential of the DNA biochip.

Development of a room-temperature phosphorescence fiber-optic sensor.

The design of a new fiber-optic sensor based on solid-surface room-temperature phosphorimetry is presented for the analyses of polycyclic aromatic hydrocarbons in water samples. Analytical figures of merit are given for several compounds of environmental importance. Limits of detection at the nanograms per milliliter level were estimated for pyrene, benzo[e]pyrene, benzo[ghi]perylene, 1,2:3,4-dibenzanthracene, coronene, and 2,3-benzofluorene. The linearity of response of the phosphorescence sensor was evaluated, showing a fairly linear behavior for quantitative analysis. Finally, the feasibility of monitoring polycyclic aromatic hydrocarbons in aqueous media was illustrated by identifying pyrene in a contaminated groundwater sample.

A beta-cyclodextrin based fiber-optic chemical sensor: a fractal analysis.

A fractal analysis is presented for the binding of pyrene in solution to beta-cyclodextrin attached to a fiber-optic chemical sensor. The specific (k(l)) and non-specific binding rate coefficients and the fractal dimension (D(f)) (specific binding case only) both tend to increase as the pyrene concentration in solution increases from 12.4 to 124 ng ml(-1). Predictive relations for the binding rate coefficient (specific as well as non-specific binding) and for D(f) (specific binding case only) as a function of pyrene concentration are provided. These relations fit the calculated k(l) and D(f) values in the pyrene concentration range reasonably well. Fractal analysis data seem to indicate that an increase in the pyrene concentration in solution increases the "ruggedness" or inhomogeneity on the fiber-optic biosensor surface. The fractal analysis provides novel physical insights into the reactions occuring on the fiber-optic chemical surface and should assist in the design of fiber-optic chemical sensors.

A fiber-optic cyclodextrin-based sensor.

This paper describes the development of a fiber-optic cyclodextrin-based (FCD) sensor. The device uses laser excitation and fluorescence detection with beta-cyclodextrin as the reagent phase, immobilized at the tip of an optical fiber. The sensitivity of the FCD sensor is 14 times as great as that of a bare optical fiber when measurements are made with the fiber immersed in a buffer after a 10-min incubation period. The selectivity of the sensor is illustrated with pyrene as the model compound and 5,6-benzoquinoline as the interferent. An interference study with a contaminated environmental ground water sample is used to illustrate the usefulness of the FCD device.

Evaluation of the fiber-optic antibody-based fluoroimmunosensor for DNA adducts in human placenta samples.

This paper presents the application of a fiber-optic antibody-based fluoroimmunosensor (FIS) for measuring DNA adducts of benzo[alpha]pyrene in human placenta samples. The FIS combines the excellent specificity of the antigen-antibody reaction, the high sensitivity of laser excitation, and the versatility of fiber-optic technology. The FIS was used to detect benzo[alpha]pyrene tetrol (BPT) after release from DNA by mild acid hydrolysis. These placenta samples contained one molecule of adduct per 10(7) base pairs. The limit of detection of the FIS for BPT is about 14 amol (14 x 10(-18) mol).

Experimental assessment of the allergenicity of a psyllium-containing laxative.

The allergenicity of psyllium was investigated using the Guinea Pig Maximation Test. Four of 12 animals gave positive skin reactions. Subsequent inhalation challenge of the same animals yielded respiratory hypersensitivity reactions in four of the animals. Two animals gave both skin and respiratory responses. The mosaic of respiratory and dermatologic symptoms demonstrated by animals resembled the pattern of findings reported in clinical studies. Results of SDS-acrylamide gel electrophoresis, immunoblot and protein determinations of aqueous psyllium extracts failed to indicate the presence of protein. Spectrophotometric studies suggested that the extract was a gum with a molecular weight greater than 14,000 daltons.

Workplace allergenicity of a psyllium-containing bulk laxative.

IgE antibodies specific to psyllium were demonstrated by RAST in a patient with work-place-related asthmatic and dermatological reactions. Antibodies were not cross-reactive with the related plant, English plantain.