COVID-19 open source data sets: a comprehensive survey.

In December 2019, a novel virus named COVID-19 emerged in the city of Wuhan, China. In early 2020, the COVID-19 virus spread in all continents of the world except Antarctica, causing widespread infections and deaths due to its contagious characteristics and no medically proven treatment. The COVID-19 pandemic has been termed as the most consequential global crisis since the World Wars. The first line of defense against the COVID-19 spread are the non-pharmaceutical measures like social distancing and personal hygiene. The great pandemic affecting billions of lives economically and socially has motivated the scientific community to come up with solutions based on computer-aided digital technologies for diagnosis, prevention, and estimation of COVID-19. Some of these efforts focus on statistical and Artificial Intelligence-based analysis of the available data concerning COVID-19. All of these scientific efforts necessitate that the data brought to service for the analysis should be open source to promote the extension, validation, and collaboration of the work in the fight against the global pandemic. Our survey is motivated by the open source efforts that can be mainly categorized as (a) COVID-19 diagnosis from CT scans, X-ray images, and cough sounds, (b) COVID-19 case reporting, transmission estimation, and prognosis from epidemiological, demographic, and mobility data, (c) COVID-19 emotional and sentiment analysis from social media, and (d) knowledge-based discovery and semantic analysis from the collection of scholarly articles covering COVID-19. We survey and compare research works in these directions that are accompanied by open source data and code. Future research directions for data-driven COVID-19 research are also debated. We hope that the article will provide the scientific community with an initiative to start open source extensible and transparent research in the collective fight against the COVID-19 pandemic.

Evaluating the Dynamics of Bluetooth Low Energy Based COVID-19 Risk Estimation for Educational Institutes.

COVID-19 tracing applications have been launched in several countries to track and control the spread of viruses. Such applications utilize Bluetooth Low Energy (BLE) transmissions, which are short range and can be used to determine infected and susceptible persons near an infected person. The COVID-19 risk estimation depends on an epidemic model for the virus behavior and Machine Learning (ML) model to classify the risk based on time series distance of the nodes that may be infected. The BLE technology enabled smartphones continuously transmit beacons and the distance is inferred from the received signal strength indicators (RSSI). The educational activities have shifted to online teaching modes due to the contagious nature of COVID-19. The government policy makers decide on education mode (online, hybrid, or physical) with little technological insight on actual risk estimates. In this study, we analyze BLE technology to debate the COVID-19 risks in university block and indoor class environments. We utilize a sigmoid based epidemic model with varying thresholds of distance to label contact data with high risk or low risk based on features such as contact duration. Further, we train multiple ML classifiers to classify a person into high risk or low risk based on labeled data of RSSI and distance. We analyze the accuracy of the ML classifiers in terms of F-score, receiver operating characteristic (ROC) curve, and confusion matrix. Lastly, we debate future research directions and limitations of this study. We complement the study with open source code so that it can be validated and further investigated.

Correction: Identifying and Ranking Common COVID-19 Symptoms From Tweets in Arabic: Content Analysis.

[This corrects the article DOI: 10.2196/21329.].

Identifying and Ranking Common COVID-19 Symptoms From Tweets in Arabic: Content Analysis.

BACKGROUND: A substantial amount of COVID-19-related data is generated by Twitter users every day. Self-reports of COVID-19 symptoms on Twitter can reveal a great deal about the disease and its prevalence in the community. In particular, self-reports can be used as a valuable resource to learn more about common symptoms and whether their order of appearance differs among different groups in the community. These data may be used to develop a COVID-19 risk assessment system that is tailored toward a specific group of people. OBJECTIVE: The aim of this study was to identify the most common symptoms reported by patients with COVID-19, as well as the order of symptom appearance, by examining tweets in Arabic. METHODS: We searched Twitter posts in Arabic for personal reports of COVID-19 symptoms from March 1 to May 27, 2020. We identified 463 Arabic users who had tweeted about testing positive for COVID-19 and extracted the symptoms they associated with the disease. Furthermore, we asked them directly via personal messaging to rank the appearance of the first 3 symptoms they had experienced immediately before (or after) their COVID-19 diagnosis. Finally, we tracked their Twitter timeline to identify additional symptoms that were mentioned within ±5 days from the day of the first tweet on their COVID-19 diagnosis. In total, 270 COVID-19 self-reports were collected, and symptoms were (at least partially) ranked. RESULTS: The collected self-reports contained 893 symptoms from 201 (74%) male and 69 (26%) female Twitter users. The majority (n=270, 82%) of the tracked users were living in Saudi Arabia (n=125, 46%) and Kuwait (n=98, 36%). Furthermore, 13% (n=36) of the collected reports were from asymptomatic individuals. Of the 234 users with symptoms, 66% (n=180) provided a chronological order of appearance for at least 3 symptoms. Fever (n=139, 59%), headache (n=101, 43%), and anosmia (n=91, 39%) were the top 3 symptoms mentioned in the self-reports. Additionally, 28% (n=65) reported that their COVID-19 experience started with a fever, 15% (n=34) with a headache, and 12% (n=28) with anosmia. Of the 110 symptomatic cases from Saudi Arabia, the most common 3 symptoms were fever (n=65, 59%), anosmia (n=46, 42%), and headache (n=42, 38%). CONCLUSIONS: This study identified the most common symptoms of COVID-19 from tweets in Arabic. These symptoms can be further analyzed in clinical settings and may be incorporated into a real-time COVID-19 risk estimator.