Flow Behavior of Entangled Polymer Nanoparticle Composites in a Nanotube: Insights into Jamming State.

Using molecular dynamics simulations, this study investigates the equilibrium properties and flow behaviors of entangled polymer nanoparticle composites (PNCs) within a nanotube. The results show that the density distribution of nanoparticles (NPs), displacement of polymer chains and NPs, and the moduli of PNCs remain relatively unaffected when NP volume fractions (ΦN) ≤0.10. However, the flow behavior of entangled PNCs deviates from the ideal parabolic profile seen in unentangled PNCs, displaying plug-like flow characteristics with a significant platform region, indicating the presence of shear bands. Interestingly, entangled PNCs at intermediate ΦN values undergo a significant alteration in NP distribution under steady flow, resulting in notable NP aggregation. At ΦN = 0.30, a distinct change in the static structure of PNCs occurs, reducing the equilibrium distance between neighboring NPs. Consequently, the motion of both polymer chains and NPs becomes restricted, leading to an increase in the moduli of PNCs resembling solid-like behavior. Additionally, the entangled PNCs experience a complete absence of flow, indicating the entry into a jamming state. This study contributes to the understanding of PNCs flow behavior and provides insights into fundamental aspects and practical implications of PNCs.

Self-Healing and Shape-Editable Wearable Supercapacitors Based on Highly Stretchable Hydrogel Electrolytes.

Shape editability combined with a self-healing capability and long-term cycling durability are highly desirable properties for wearable supercapacitors. Most wearable supercapacitors have rigid architecture and lack the capacity for editability into desirable shapes. Through sandwiching hydrogel electrolytes between two electrodes, a suite of wearable supercapacitors that integrate desirable properties namely: repeated shape editability, excellent self-healing capability, and long-term cycling durability is demonstrated. A strategy is proposed to enhance the long-term cycling durability by utilizing hydrogel electrolytes with unique cross-linking structures. The dynamic crosslinking sites are formed by quadruple H bonds and hydrophobic association, stabilizing the supercapacitors from inorganic ion disruption during charge-discharge processes. The fabricated supercapacitors result in the capacitance retention rates of 99.6% and 95.8% after 5000 and 10 000 charge-discharge cycles, respectively, which are much higher than others reported in the literature. Furthermore, the supercapacitor sheets can be repeatedly processed into various shapes without any capacitance loss. The supercapacitors exhibit a 95% capacitance retention rate after five cutting/self-healing cycles, indicative of their excellent self-healing performance. To demonstrate real-life applicability, the wearable supercapacitors are successfully used to power a light-emitting diode and an electronic watch.

Local-Average Free Volume Correlates with Dynamics in Glass Formers.

Glass formers exhibit a pronounced slowdown in dynamics, accompanied by progressive heterogeneity as they approach the glass transition. There is intense debate over whether the dramatic slowdown is caused by dynamical heterogeneity and whether the enhanced dynamical heterogeneity originates from structural causes. However, the connection between dynamical heterogeneity and the spatial distribution of the single-particle free volume (a purely static structural quantity) was found to be rather weak, which raises the question of whether dynamic heterogeneity has a purely structural origin. Here, by introducing the concept of local-average free volume, we present numerical evidence that long-time dynamic heterogeneity shows significantly enhanced correlation with the average local free volume over a length scale of a few neighboring shells. Our results resolve the long-standing controversy about whether free volume plays an important role in particle rearrangements associated with the activated hopping relaxation. The concept of "local average" can be applied to other local structural descriptors to better correlate with dynamic heterogeneity in glass-forming liquids.

Critical roles of the activation of ethylene pathway genes mediated by DNA demethylation in Arabidopsis hyperhydricity.

Hyperhydricity (HH) often occurs in plant tissue culture, seriously influencing the commercial micropropagation and genetic improvement. DNA methylation has been studied for its function in plant development and stress responses. However, its potential role in HH is unknown. In this study, we report the first comparative DNA methylome analysis of normal and hyperhydric Arabidopsis thaliana (L.) Heynh. seedlings using whole-genome bisulfite sequencing (BS-seq). We found that the global methylation level decreased in hyperhydric seedlings, and most of the differentially methylated genes were CHH hypomethylated genes. Moreover, the bisulfite sequencing results showed that hyperhydric seedlings displayed CHH demethylation patterns in the promoter of the ACS1 and ETR1 genes, resulting in upregulated expression of both genes and increased ethylene accumulation. Furthermore, hyperhydric seedling displayed reduced stomatal aperture accompanied by decreased water loss and increased phosphorylation of aquaporins accompanied by increased water uptake. While silver nitrate (AgNO3 ) prevented HH by maintained the degree of methylation in the promoter regions of ACS1 and ETR1 and downregulated the transcription of both genes. AgNO3 also reduced the content of ethylene together with the phosphorylation of aquaporins and water uptake. Taken together, this study suggested that DNA demethylation is a key switch that activates ethylene pathway genes to enable ethylene synthesis and signal transduction, which may subsequently influence aquaporin phosphorylation and stomatal aperture, eventually causing HH; thus, DNA demethylation plays a crucial role in HH. These results provide insights into the epigenetic regulation mechanism of HH and confirm the role of ethylene and AgNO3 in hyperhydricity control.

Integration of DSF and Temperature Signals for RpfC/RpfG Two-Component System Modulating Protease Production in Stenotrophomonas maltophilia FF11.

Two-component signal system (TCS) is the predominant bacterial sense-and-response machinery. RpfC/RpfG TCS involved in quorum sensing molecule Diffuse Signal Factor (DSF) signal perception and transduction was well studied in many bacteria. However, whether other environmental factors participating in the signal perception and transduction of RpfC/RpfG was still unclear. Here, we showed that RpfC/RpfG could integrate temperature and DSF signal partially controlling the production of the temperature-dependent protease (SmtP) in S. maltophilia FF11, a strain isolated from frozen Antarctic krill, exhibited spoilage potential due to secret more protease at low temperatures involving in protein degradation. qRT-PCR analysis revealed rpf system mediating approximately 60% transcription activity of Clp, a critical transcription factor linking with LotS/LotR, consisting a signal network controlling completely the SmtP production in previous study. Protease production was partially reduced in rpfF (coding DSF synthetase) mutant strains at 15 °C or 25 °C, not be increased through addition DSF or overexpression RpfF in WT at 37 °C, indicating that DSF was effective for protease production only at low temperatures in S. maltophilia. Additionally, biochemical analysis revealed the enzymatic activity of RpfG from strain FF11 cultured at 37 °C or DSF-deficient strains grown at 25 °C was significantly reduced compared to that of RpfG from strain FF11 cultured at 25 °C. These findings outline an interplay mechanism that allows S. maltophilia to integrate quorum sensing and temperature cues controlling protease production, and imply a potential relationship between two distinct systems of RpfC/RpfG and LotS/LotR.

Polymer Translocation Time.

The force- and flow-induced translocation processes of linear and ring polymers are studied using a combination of multiparticle collision dynamics and molecular dynamics, focusing on the behavior of the polymer translocation time. We compare the force- and flow-induced translocations of linear and ring polymers. It is found that when the translocation time (τ*) is characterized by scaling exponents, δ, δ', and α, via the relations τ* ∼ fδNα and τ* ∼ Jδ'Nα, the scaling exponents are not constants. For long chains tested, α = 1.0 for both force- and flow-induced translocations. The difference between the force- and flow-induced translocations stems from different monomer crowding effects due to distinct flow patterns outside the channel. Furthermore, general relations for polymer translocation time are derived for these two translocation processes, which are in good agreement with the simulation results. Our results provide clear molecular pictures for the force- and flow-induced translocations, which shed light on the understanding of translocation dynamics and provide guidance for practical applications such as molecular sequencing and ultrafiltration.

Salt-Induced Liquid-Liquid Phase Separation: Combined Experimental and Theoretical Investigation of Water-Acetonitrile-Salt Mixtures.

Salt-induced liquid-liquid phase separation in liquid mixtures is a common phenomenon in nature and in various applications, such as in separation and extraction of chemicals. Here, we present results of a systematic investigation of the phase behaviors in water-acetonitrile-salt mixtures using a combination of experiment and theory. We obtain complete ternary phase diagrams for nine representative salts in water-acetonitrile mixtures by cloud point and component analysis. We construct a thermodynamic free energy model by accounting for the nonideal mixing of the liquids, ion hydration, electrostatic interactions, and Born energy. Our theory yields phase diagrams in good agreement with the experimental data. By comparing the contributions due to the electrostatic interaction, Born energy, and hydration, we find that hydration is the main driving force for the liquid-liquid separation and is a major contributor to the specific ion effects. Our theory highlights the important role of entropy in the hydration driving force. We discuss the implications of our findings in the context of salting-out assisted liquid-liquid extraction and make suggestions for selecting salt ions to optimize the separation performance.

Shear Banding in Entangled Polymers: Stress Plateau, Banding Location, and Lever Rule.

Using molecular dynamics simulation, we study shear banding of entangled polymer melts under a steady shear. The steady shear stress vs shear rate curve exhibits a plateau spanning nearly two decades of shear rates in which shear banding is observed, and the steady shear stress remains unchanged after switching the shear rates halfway in the range of shear rates within the plateau region. In addition, we find strong correlation in the location of the shear bands between different shear rates starting from the same microstate configurations at equilibrium, which suggests the importance of the inherent structural heterogeneity in the entangled polymer network for shear banding. Furthermore, for the steady shear bands persisting to the longest simulated time of 9.0τd0 (disengagement time), the shear rate in the slow band and the relative proportion of the bands do not change very much with the increase of imposed shear rate, but the shear rate in the fast band increases approximately in proportion to the imposed shear rates, in contradiction to the lever rule.

Bone marrow mesenchymal stem cell-derived exosomes promote plasminogen activator inhibitor 1 expression in vascular cells in the local microenvironment during rabbit osteonecrosis of the femoral head.

BACKGROUND: Nontraumatic osteonecrosis of the femoral head (NONFH) is a highly disabling orthopedic disease in young individuals. Plasminogen activator inhibitor 1 (PAI-1) has been reported to be positively associated with NONFH. We aimed to investigate the dysregulating PAI-1 in bone marrow mesenchymal stem cells (BMMSCs) and vascular cells in rabbit steroid-induced NONFH. METHODS: To verify the hypothesis that BMMSCs could promote thrombus formation in a paracrine manner, we collected exosomes from glucocorticoid-treated BMMSCs (GB-Exo) to determine their regulatory effects on vascular cells. microRNA sequencing was conducted to find potential regulators in GB-Exo. Utilizing gain-of-function and knockdown approaches, we testified the regulatory effect of microRNA in exosomes. RESULTS: The expression of PAI-1 was significantly increased in the local microenvironment of the femoral head in the ONFH model. GB-Exo promoted PAI-1 expression in vascular smooth muscle cells and vascular endothelial cells. We also revealed that miR-451-5p in GB-Exo plays a crucial role for the elevated PAI-1. Moreover, we identified miR-133b-3p and tested its role as a potential inhibitor of PAI-1. CONCLUSIONS: This study provided considerable evidence for BMMSC exosomal miR-mediated upregulation of the fibrinolytic regulator PAI-1 in vascular cells. The disruption of coagulation and low fibrinolysis in the femoral head will eventually lead to a disturbance in the microcirculation of NONFH. We believe that our findings could be of great significance for guiding clinical trials in the future.

The bacterial potassium transporter gene MbtrkH improves K+ uptake in yeast and tobacco.

K+ is an essential nutrient for plant growth and is responsible for many important physiological processes. K+ deficiency leads to crop yield losses, and overexpression of K+ transporter genes has been proven to be an effective way to resolve this problem. However, current research on the overexpression of K+ transporter genes is limited to plant sources. TrkH is a bacterial K+ transporter whose function generally depends on the regulation of TrkA. To date, whether TrkH can improve K+ uptake in eukaryotic organisms is still unknown. In this study, a novel MbtrkH gene was cloned from marine microbial metagenomic DNA. Functional complementation and K+-depletion analyses revealed that MbTrkH functions in K+ uptake in the K+-deficient yeast strain CY162. Moreover, K+-depletion assays revealed that MbtrkH overexpression improves plant K+ uptake. K+ hydroponic culture experiments showed that, compared with WT tobacco lines, MbtrkH transgenic tobacco lines had significantly greater fresh weights, dry weights and K+ contents. These results indicate that MbTrkH promotes K+ uptake independently of TrkA in eukaryotes and provide a new strategy for improving K+-use efficiency in plants.

Long-term Production of Glycogen and Hepatic-Derived, Cell-Invasion-Promoting Chemokines by Ultrasound-Driven Hepatic-Differentiated Human Bone Marrow Mesenchymal Stem Cells.

The current treatment for liver failure is restricted to surgical liver transplantation, which is technically complicated, limited by the shortage of available organs and presents major risks to the patient. Bone marrow mesenchymal stem cells (BMSCs) represent promising sources of hepatocyte-like cells for cell transplantation treatment. However, a safe and efficient induction method for their differentiation remains to be defined. Here we further optimized an effective technique by combining high-dose treatment with hepatocyte growth factor (HGF) and ultrasound stimulation. The optimized ultrasound parameter (1.0 W/cm2 intensity, 1 MHz frequency, 20% duty cycle, 100 Hz pulse repetition frequency, 60-s irradiation duration, triple times in three days) combined with different HGF doses (10, 20 and 50 ng/ml) was used to treat BMSCs. The results showed that the specific hepatic markers, including α-fetoprotein (αFP/AFP), cytokeratin 18 (CK18), albumin (ALB) and glycogen, were increased in a dose-dependent manner. Their concentration was then further increased when ultrasound irradiation was administered (P < 0.05), as indicated by PCR, Western blot and immunofluorescence staining as well as a glycogen synthesis test. Furthermore, analysis of the hepatocyte-derived chemokines showed elevated stromal cell-derived factor 1alpha (SDF-1α) and C-X-C chemokine receptor type 4 (CXCR4) after HGF treatment. Again, concentrations of those chemokines were further increased by ultrasound radiation (P < 0.05). The observed increased effect was sustained for 21 days. To summarize, we further defined the optimal combination of HGF and ultrasound treatment to increase the differentiation and chemotaxis of BMSCs in a safe, sustained and efficient manner. These findings provide a new perspective for stem cell orientation in the field of tissue engineering.

Two-step relaxation and the breakdown of the Stokes-Einstein relation in glass-forming liquids.

It is well known that glass-forming liquids exhibit a number of anomalous dynamical phenomena, most notably a two-step relaxation in the self-intermediate scattering function and the breakdown of the Stokes-Einstein (SE) relation, as they are cooled toward the glass transition temperature. While these phenomena are generally ascribed to dynamic heterogeneity, specifically to the presence of slow- and fast-moving particles, a quantitative elucidation of the two-step relaxation and the violation of the SE relation in terms of these concepts has not been successful. In this work, we propose a classification of particles according to the rank order of their displacements (from an arbitrarily defined origin of time), and we divide the particles into long-distance (LD), medium-distance, and short-distance (SD) traveling particle groups. Using molecular-dynamics simulation data of the Kob-Andersen model, we show quantitatively that the LD group is responsible for the fast relaxation in the two-step relaxation process in the intermediate scattering function, while the SD group gives rise to the slow (α) relaxation. Furthermore, our analysis reveals that τ_{α} is controlled by the SD group, while the ensemble-averaged diffusion coefficient D is controlled by both the LD and SD groups. The combination of these two features provides a natural explanation for the breakdown in the SE relation at low temperature. In addition, we find that the α-relaxation time, τ_{α}, of the overall system is related to the relaxation time of the LD particles, τ_{LD}, as τ_{α}=τ_{0}exp(Ωτ_{LD}/k_{B}T).

Transient Deregulation of Canonical Wnt Signaling in Developing Pyramidal Neurons Leads to Dendritic Defects and Impaired Behavior.

During development, the precise implementation of molecular programs is a key determinant of proper dendritic development. Here, we demonstrate that canonical Wnt signaling is active in dendritic bundle-forming layer II pyramidal neurons of the rat retrosplenial cortex during dendritic branching and spine formation. Transient downregulation of canonical Wnt transcriptional activity during the early postnatal period irreversibly reduces dendritic arbor architecture, leading to long-lasting deficits in spatial exploration and/or navigation and spatial memory in the adult. During the late phase of dendritogenesis, canonical Wnt-dependent transcription regulates spine formation and maturation. We identify neurotrophin-3 as canonical Wnt target gene in regulating dendritogenesis. Our findings demonstrate how temporary imbalance in canonical Wnt signaling during specific time windows can result in irreversible dendritic defects, leading to abnormal behavior in the adult.

Potassium channels and their role in glioma: A mini review.

K+ channels regulate a multitude of biological processes and play important roles in a variety of diseases by controlling potassium flow across cell membranes. They are widely expressed in the central and peripheral nervous system. As a malignant tumor derived from nerve epithelium, glioma has the characteristics of high incidence, high recurrence rate, high mortality rate, and low cure rate. Since glioma cells show invasive growth, current surgical methods cannot completely remove tumors. Adjuvant chemotherapy is still needed after surgery. Because the blood-brain barrier and other factors lead to a lower effective concentration of chemotherapeutic drugs in the tumor, the recurrence rate of residual lesions is extremely high. Therefore, new therapeutic methods are needed. Numerous studies have shown that different K+ channel subtypes are differentially expressed in glioma cells and are involved in the regulation of the cell cycle of glioma cells to arrest them at different stages of the cell cycle. Increasing evidence suggests that K+ channels express in glioma cells and regulate glioma cell behaviors such as cell cycle, proliferation and apoptosis. This review article aims to summarize the current knowledge on the function of K+ channels in glioma, suggests K+ channels participating in the development of glioma.

Individual circular polyelectrolytes under shear flow.

Individual circular polyelectrolytes in simple shear flow are studied by means of mesoscale hydrodynamic simulations, revealing the complex coupling effects of shear rate, electrostatic interaction, and circular architecture on their conformational and dynamical properties. Shear flow deforms the polyelectrolyte and strips condensed counterions from its backbone. A decrease in condensed counterions alters electrostatic interactions among charged particles, affecting shear-induced polymer deformation and orientation. Circular architecture determines the features of deformation and orientation. At weak electrostatic interaction strengths, the polyelectrolyte changes its shape from an oblate ring at small shear rates to a prolate ring at large shear rates, whereas strong electrostatic interaction strengths are associated with a transition from a prolate coil to a prolate ring. Circular polyelectrolytes exhibit tumbling and tank-treading motions in the range of large shear rates. Further study reveals a similarity between the roles of intramolecular electrostatic repulsion and chain rigidity in shear-induced dynamics.

Ion Polarizabilities in Binary Liquid Mixtures of Water/Organic Solvents.

Using our recently proposed method to obtain salt and ion polarizabilities in aqueous solutions, we determine the polarizabilities of five salts (LiCl, NaCl, NaBr, KBr, and MgSO4) in water-acetonitrile, water-ethanol, and water-acetone solutions at eight different water-organic solvent compositions at the D-line of sodium (589.3 ± 0.1 nm). Setting Li+ as the reference ion, we determine the ion polarizabilities of Na+, Cl-, and Br- in binary liquid mixtures. Our results show that cation polarizability is nearly unaffected by solvent composition, but anion polarizability exhibits a nonmonotonic behavior with increasing mole fraction of the organic component in the liquid mixture. This suggests that ion polarizability in a solution is affected by the solvent. The results of salt and ion polarizabilities can be used as important reference data for physical chemistry, atmospheric science, and biophysics.

LotS/LotR/Clp, a novel signal pathway responding to temperature, modulating protease expression via c-di-GMP mediated manner in Stenotrophomonas maltophilia FF11.

Stenotrophomonas maltophilia as one of increasing food spoilage bacteria and fish pathogens has become a threat to aquiculture industry. A major factor contributing to the success of bacterium is its outstanding ability to secrete protease at low temperatures. Here, a cAMP receptor like protein (Clp) shows a positive regulation on this protease, named S. maltophilia temperature-response protease (SmtP). Interestingly, a two-component system, comprising of LotS sensor and LotR regulator, for low-temperature response is also confirmed to modulate SmtP expression with similar effect to Clp. Evidence is presented that LotS/LotR modulates smtP (coding SmtP) expression via Clp: clp promoter activity was reduced significantly at low temperatures and protease activity was partially restored by Clp overexpressed in lotS or lotR deletion strain. Furthermore, as a Clp negative effector, the binding ability of c-di-GMP with Clp is not impacted by temperature. c-di-GMP level was increased in S. maltophilia growing at high temperature, but not exhibited significantly in lotR deleted strain, these indicate that LotR is required for temperature modulating c-di-GMP level, although the synthesis or degradation activity of c-di-GMP by LotR was not detected. These findings suggest that LotS/LotR/Clp play an important role in responding to temperature stimuli via c-di-GMP mediated manner.

Eosinophils Mediate Tissue Injury in the Autoimmune Skin Disease Bullous Pemphigoid.

Eosinophils are typically associated with unique inflammatory settings, including allergic inflammation and helminth infections. However, new information suggests that eosinophils contribute more broadly to inflammatory responses and participate in local immune regulation and the tissue remodeling/repair events linked with a variety of diseases. Eosinophilic infiltration has long been a histologic hallmark of bullous pemphigoid (BP), a subepidermal autoimmune blistering disease characterized by autoantibodies directed against basement membrane protein BP180. However, the exact role of eosinophils in disease pathogenesis remains largely unknown. We show here that eosinophils are necessary for IgE autoantibody-mediated BP blister formation in a humanized IgE receptor mouse model of BP. Disease severity is IgE dose dependent and correlates with the degree of eosinophil infiltration in the skin. Furthermore, IgE autoantibodies fail to induce BP in eosinophil-deficient mice, confirming that eosinophils are required for IgE-mediated tissue injury. Thus, eosinophils provide the cellular link between IgE autoantibodies and skin blistering in this murine model of BP. These findings suggest a role for eosinophils in autoimmune disease and have important implications for the treatment of BP and other antibody-mediated inflammatory and autoimmune diseases.

Point-to-set dynamic length scale in binary Lennard-Jones glass-formers.

Our recent molecular dynamics simulation results of binary particle glass-former systems demonstrated that the non-monotonic temperature T-dependence of the point-to-set dynamic length scale ξcdyn in harmonic (HM) systems is not an intrinsic property of bulk liquids but originates from wall effects. We would expect our results to apply equally to other simple models, such as Lennard-Jones (LJ) systems. However, Hocky et al. presented a monotonic T-dependent ξcdyn in a LJ system. Therefore, the present work employs molecular dynamics simulations to investigate the T-dependent behavior of ξcdyn in the LJ system employed by Hocky et al. to clarify our expectation. Results employing a geometry size d that is somewhat smaller than that employed by Hocky et al. reveal that a non-monotonic behavior exists in the LJ system. By varying the value of d, we demonstrate that the formation of a peak in ξcdyn with respect to T in the LJ system is the natural result of wall effects. More importantly, a new non-monotonic behavior is observed, where the temperature at which the ratio of the characteristic time required for the overlap profile of the system to decay to a given value for a point near the wall to the corresponding characteristic time at a point in the center attains a maximum is in good agreement with the temperature Tmax-c at which ξcdyn attains a maximum value, indicating that the non-monotonic behavior of ξcdyn with respect to T is a natural property of liquids in a sandwiched geometry. Furthermore, we find that, contrary to HM systems, where the values of Tmax-c obtained for all values of d considered were greater than the mode-coupling temperature Tc, the value of Tmax-c obtained for LJ systems can be either greater than, equal to, or less than Tc because an HM system has a stronger finite-size effect than that in a LJ system, indirectly implying that the conclusion derived from random first-order transition theory that a dramatic change occurs near Tc bears no necessary relationship with the non-monotonic evolution of ξcdyn with respect to T.

Nonmonotonic dynamic correlations in quasi-two-dimensional confined glass-forming liquids.

It has been broadly accepted that the behavior of glass-forming liquids, where their relaxation dynamics exhibit a pronounced slowdown as they are cooled toward the glass transition temperature, is caused by the increase in one or more correlation lengths. However, the role of length scales in the dynamics of glass-forming liquids is not clearly established, and past simulation work that suggests a surprising nonmonotonic temperature evolution of spatial dynamical correlations near the mode-coupling crossover temperature has been both questioned and supported by subsequent work. Here, using molecular dynamics simulation, we also show a striking maximum in the dynamic length scale ξ_{c}^{dyn} at a given temperature, but the temperature of this maximum is found to shift as the size of the confined system increases. Furthermore, we find that such a maximum disappears for all geometry sizes considered when a rough wall is replaced with a smooth, hard wall, suggesting that the nature of the nonmonotonic temperature dependence of ξ_{c}^{dyn} does not reflect an intrinsic property of bulk liquids, but originates from wall effects. Our results provide new insights into the dynamics of glass-forming liquids, particularly for quasi-two-dimensional systems.