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1.
ACS Appl Mater Interfaces ; 16(17): 21486-21497, 2024 May 01.
Artigo em Inglês | MEDLINE | ID: mdl-38640485

RESUMO

The combined effects of twisted intramolecular charge transfer (TICT) and aggregation-induced emission (AIE) phenomena have demonstrated a significant influence on excited-state chemistry. These combined TICT and AIE features have been extensively utilized to enhance photodynamic and photothermal therapy. Herein, we demonstrated the synergistic capabilities of TICT and AIE phenomena in the design of the photoremovable protecting group (PRPG), namely, NMe2-Napy-BF2. This innovative PRPG incorporates TICT and AIE characteristics, resulting in four remarkable properties: (i) red-shifted absorption wavelength, (ii) strong near-infrared (NIR) emission, (iii) viscosity-sensitive emission property, and (iv) accelerated photorelease rate. Inspired by these intriguing attributes, we developed a nanodrug delivery system (nano-DDS) using our PRPG for cancer treatment. In vitro studies showed that our nano-DDS manifested effective cellular internalization, specific staining of cancer cells, high-resolution confocal imaging of cancerous cells in the NIR region, and controlled release of the anticancer drug chlorambucil upon exposure to light, leading to cancer cell eradication. Most notably, our nano-DDS exhibited a substantially increased two-photon (TP) absorption cross section (435 GM), exhibiting its potential for in vivo applications. This development holds promise for significant advancements in cancer treatment strategies.


Assuntos
Naftiridinas , Fótons , Humanos , Naftiridinas/química , Naftiridinas/farmacologia , Antineoplásicos/química , Antineoplásicos/farmacologia , Clorambucila/química , Clorambucila/farmacologia , Fotoquimioterapia , Linhagem Celular Tumoral , Sobrevivência Celular/efeitos dos fármacos , Neoplasias/tratamento farmacológico , Neoplasias/patologia , Nanopartículas/química
2.
J Phys Chem A ; 128(8): 1466-1476, 2024 Feb 29.
Artigo em Inglês | MEDLINE | ID: mdl-38364260

RESUMO

Considering the importance of magnesium-bearing hydrocarbon molecules (MgCnH; n = 2, 4, and 6) in the carbon-rich circumstellar envelopes (e.g., IRC+10216), a total of 28 constitutional isomers of MgC4H have been theoretically investigated using density functional theory (DFT) and coupled-cluster methods. The zero-point vibrational energy corrected relative energies at the ROCCSD(T)/cc-pCVTZ level of theory reveal that the linear isomer, 1-magnesapent-2,4-diyn-1-yl (1, 2Σ+), is the global minimum geometry on the MgC4H potential energy surface. The latter has been detected both in the laboratory and in the evolved carbon star, IRC+10216. The calculated spectroscopic data for 1 match well with the experimental observations (error ∼ 0.78%) which validates our theoretical methodology. Plausible isomerization processes happening among different isomers are examined using DFT and coupled-cluster methods. CASPT2 calculations have been performed for a few isomers exhibiting multireference characteristics. The second most stable isomer, 1-ethynyl-1λ3-magnesacycloprop-2-ene-2,3-diyl (2, 2A1, µ = 2.54 D), is 146 kJ mol-1 higher in energy than 1 and possibly the next promising candidate to be detected in the laboratory or in the interstellar medium in future.

3.
Chemistry ; 30(20): e202304206, 2024 Apr 05.
Artigo em Inglês | MEDLINE | ID: mdl-38319588

RESUMO

This study conducts a thorough theoretical investigation of Thermally Activated Delayed Fluorescence (TADF) in phenothiazine-based systems, examining ten molecular configurations recognized experimentally as TADF-active. Employing Time-Dependent Density Functional Theory (TD-DFT), our analysis spans the investigation of singlet-triplet energy gaps (ΔEST), spin-orbit coupling, and excitation characteristics using Multiwfn. This approach not only validates the adherence to El Sayed's rule across these systems but also provides a detailed understanding of charge transfer dynamics, as visualized through heat maps. A significant aspect of our study is the exploration of different oxidation states of sulfur and site substitutions on phenothiazine. This systematic variation aims to identify additional TADF-active compounds, drawing parallels with properties characterizing other known TADF emitters. Our investigation into Reverse Intersystem Crossing (rISC) rates and the analysis of dihedral angles in relation to ΔEST values offer nuanced insights into the TADF behaviours of these molecules. By integrating rigorous computational analysis with practical implications, we provide a foundational understanding that enhances the design and optimization of phenothiazine-based materials for optoelectronic applications. This work not only advances our theoretical understanding of TADF in phenothiazine derivatives but also serves as a guide for experimentalists and industry professionals in the strategic design of new TADF materials.

4.
Chem Sci ; 14(36): 9872-9884, 2023 Sep 20.
Artigo em Inglês | MEDLINE | ID: mdl-37736623

RESUMO

Installing proton-coupled electron transfer (PCET) in Ir-complexes is indeed a newly explored phenomenon, offering high quantum efficiency and tunable photophysics; however, the prospects for its application in various fields, including interrogating biological systems, are quite open and exciting. Herein, we developed various organelle-targeted Ir(iii)-complexes by leveraging the photoinduced PCET process to see the opportunities in phototherapeutic application and investigate the underlying mechanisms of action (MOAs). We diversified the ligands' nature and also incorporated a H-bonded benzimidazole-phenol (BIP) moiety with π-conjugated ancillary ligands in Ir(iii) to study the excited-state intramolecular proton transfer (ESIPT) process for tuning dual emission bands and to tempt excited-state PCET. These visible or two-photon-NIR light activatable Ir-catalysts generate reactive hydroxyl radicals (˙OH) and simultaneously oxidize electron donating biomolecules (1,4-dihydronicotinamide adenine dinucleotide or glutathione) to disrupt redox homeostasis, downregulate the GPX4 enzyme, and amplify oxidative stress and lipid peroxide (LPO) accumulation. Our homogeneous photocatalytic platform efficiently triggers organelle dysfunction mediated by a Fenton-like pathway with spatiotemporal control upon illumination to evoke ferroptosis poised with the synergistic action of apoptosis in a hypoxic environment leading to cell death. Ir2 is the most efficient photochemotherapy agent among others, which provided profound cytophototoxicity to 4T1 and MCF-7 cancerous cells and inhibited solid hypoxic tumor growth in vitro and in vivo.

5.
Phys Chem Chem Phys ; 25(29): 19986-20000, 2023 Jul 26.
Artigo em Inglês | MEDLINE | ID: mdl-37461397

RESUMO

We investigated the structural and energetic properties of nanoclusters and nanoalloys composed of group 13 elements (B, Al, and Ga) up to a cluster size of 12. We conducted a comprehensive benchmark analysis of density functional and post-Hartree-Fock methods to identify efficient and accurate approaches for studying these systems using our benchmark dataset (BAlGa16) consisting of sixteen dimers and trimers. We compared different density functionals and post-Hartree-Fock methods using bond length and binding energy as parameters. B2PLYP closely follows CCSD(T) for geometry optimization, while REVPBE, BPBE, and PBE show cost-accuracy balanced performances. MRACPF was used as the reference for benchmarking energies, with NEVPT2 being the most accurate method, followed by CCSD(T) and DLPNO-CCSD(T). M06 and range-separated hybrid functionals perform well. Based on a cost-accuracy analysis, we recommend M06/def2-SVP as the preferred method. Additionally, we explored the structural evolution of pure, binary, and ternary clusters of group 13 elements up to 12 atoms, uncovering global and local minima. Ga clusters exhibited more rectangular faces compared to the predominantly trigonal faces of B and Al clusters. Binary clusters showed B in center positions, while Ga preferred outer positions, confirming the higher cohesion of B. The most favorable size of binary clusters (12) exhibited similar compositions of Al and Ga atoms. Compositions with 16.67-40% B, 16.67-60% Al, and 20-50% Ga were estimated to have negative mixing energies, indicating their relative stability.

6.
J Phys Chem A ; 127(10): 2242-2257, 2023 Mar 16.
Artigo em Inglês | MEDLINE | ID: mdl-36877153

RESUMO

In light of the recent surge in computational studies of gold thiolate clusters, we present a comparison of popular density functionals (DFAs) and three-part corrected methods (3c-methods) on their performance by taking a data set named as AuSR18 consisting of 18 isomers of Aun(SCH3)m (m ≤ n = 1-3). We have compared the efficiency and accuracy of the DFAs and 3c-methods in geometry optimization with RI-SCS-MP2 as the reference method. Similarly, the performance for accurate and efficient energy evaluation was compared with DLPNO-CCSD(T) as the reference method. The lowest energy structure among the isomers of the largest stoichiometry from our data set, AuSR18, i.e., Au3(SCH3)3, is considered to evaluate the computational time for SCF and gradient evaluations. Alongside this, the numbers of optimization steps to locate the most stable minima of Au3(SCH3)3 are compared to assess the efficiency of the methods. A comparison of relevant bond lengths with the reference geometries was made to estimate the accuracy in geometry optimization. Some methods, such as LC-BLYP, ωB97M-D3BJ, M06-2X, and PBEh-3c, could not locate many of the minima found by most of the other methods; thus, the versatility in locating various minima is also an important criterion in choosing a method for the given project. To determine the accuracy of the methods, we compared the relative energies of the isomers in each stoichiometry and the interaction energy of the gold core with the ligands. The dependence of basis set size and relativistic effects on energies are also compared. The following are some of the highlights. TPSS has shown accuracy, while mPWPW shows comparable speed and accuracy. For the relative energies of the clusters, the hybrid range-separated DFAs are the best option. CAM-B3LYP excels, whereas B3LYP performs poorly. Overall, LC-BLYP is a balanced performer considering both the geometry and relative stability of the structures, but it lacks diversity. The 3c-methods, although fast, are less impressive in relative stability.

7.
J Biomol Struct Dyn ; 41(13): 6394-6412, 2023.
Artigo em Inglês | MEDLINE | ID: mdl-35943035

RESUMO

Epilepsy is a severe neurological disorder that occurs when the communication between the neurons is disturbed. Gamma-amino butyric acid-associated protein (GABARAP) plays a key role in balancing Gamma-aminobutyric acid-A (GABA(A)) receptor functions of inhibiting the neurotransmission and controlling the seizure. In this study, we introduce the derivatives of the selected anti-epileptic drugs, namely Felbamate and Clobazam, by substituting different hydrophilic and hydrophobic groups at the specified positions. Molecular docking studies between the derivatives and GABARAP were carried out using PyRx software. The interacting residues were identified from LigPlot+. Drug-likeness, drug-related properties, and toxic endpoints of each derivative were analyzed using the SwissADME, Osiris property explorer, and ProTox-II servers. After analyzing the binding energy, drug-properties, and toxicity, the best five derivatives of Felbamate and Clobazam were selected. Molecular Dynamic simulation studies involving the target-ligand interaction were carried out for 100 nanoseconds using GROMACS 2018. The root mean square deviation, root mean square fluctuation, radius of gyration, Solvent accessible area, Energy plots and trajectories of the ten GABARAP complexes of the derivatives, and two GABARAP complexes of parent drugs were compared and critically analyzed. Among the five Felbamate derivatives, F7 formed the most stable complex with GABARAP. Among the five Clobazam derivatives, C27, C33 and C32 showed stable GABARAP interaction. In light of the above systematic computational analysis, we propose F7, C27, C33, and C32 as the potential anti-epileptic drug candidates for developing novel therapeutics. The substitution of hydrophobic groups at para position on benzene ring has promoted strong binding to GABARAP.Communicated by Ramaswamy H. Sarma.


Assuntos
Simulação de Dinâmica Molecular , Simulação de Acoplamento Molecular , Ligação Proteica , Sequência de Aminoácidos , Clobazam , Felbamato
8.
J Phys Chem A ; 126(46): 8562-8576, 2022 Nov 24.
Artigo em Inglês | MEDLINE | ID: mdl-36378081

RESUMO

We studied the steps in the formation of active palladium catalyst species from palladium acetate dimer employing density functional theory calculations. We explored the possible pathways with an automated reaction search and studied the kinetics with stochastic simulation analysis. The dimeric form of palladium acetate is considered a resting state of the catalyst. Our reaction search starting from the dimeric form by sequential ligand addition resulted in experimentally observed monomeric species. We analyzed the bonding in the palladium acetate dimer and the role of Pd in the stability of the dimeric species. We implemented the Gillespie stochastic simulation algorithm to gain more insights into multichannel reaction paths and applied it to the degradation pathways. The analysis of the thermodynamic and kinetic data for these degradation pathways suggests that the dimeric form of the catalyst can be a potential catalytic precursor in the palladium acetate-catalyzed coupling reactions under the experimental reaction conditions.


Assuntos
Acetatos , Paládio , Catálise , Cinética , Ligantes
9.
Phys Chem Chem Phys ; 24(45): 27606-27611, 2022 Nov 23.
Artigo em Inglês | MEDLINE | ID: mdl-36366951

RESUMO

The planar pentacoordinate carbon (ppC) atom is theoretically established here in [XC7H2]2+ and [XSi2C5H2]2+, where X = Be and Mg, using density functional theory. Inclusion compounds with alkali and alkaline earth metal ions are identified with the monomer units of tricyclic C7H2 and Si2C5H2 isomers with a planar tetracoordinate carbon (ptC) atom. While all alkali and some alkaline earth metals (Ca2+, Sr2+, and Ba2+) stabilize the ptC isomer in both cases, Be2+ and Mg2+ ions form a bond directly with the ptC atom, thus making it a ppC atom. The theoretical binding energies computed at the PBE0-D3/def2-TZVP level of theory are ∼-9.68, -10.42, -5.85, and -5.47 eV for [BeC7H2]2+, [BeSi2C5H2]2+, [MgC7H2]2+, and [MgSi2C5H2]2+, respectively.

10.
Phys Chem Chem Phys ; 24(27): 16701-16711, 2022 Jul 13.
Artigo em Inglês | MEDLINE | ID: mdl-35770562

RESUMO

Density functional theory (DFT) based calculations have been carried out to explore the potential energy surface (PES) of CSinGe4-n2+/+/0 (n = 1-3) systems. The global minimum structures in the di-cationic states (1a, 1b, and 1c) contain a planar tetracoordinate carbon (ptC). For the CSi2Ge22+ system, the second stable isomer (2b) also contains a ptC with 0.67 kcal mol-1 higher energy than that of the 1b ptC isomer. The global minima of the neutral and mono-cationic states of the designed systems are not planar. The 1a, 1b, and 1c structures follow the 18 valence electron rule. The relative energies of the low-lying isomers of CSiGe32+, CSi2Ge22+, and CSi3Ge2+ systems with respect to the global minima were calculated using the CCSD(T)/aug-cc-pVTZ method. Ab initio molecular dynamics simulations for 50 ps time indicate that all the global minimum structures (1a, 1b, and 1c) are kinetically stable at 300 K and 500 K temperatures. The natural bond orbital (NBO) analysis suggests strong σ-acceptance of the ptC from the four surrounding atoms and simultaneously π-donation occurs from the ptC center. The nucleus independent chemical shift (NICS) showed σ/π-dual aromaticity. We hope that the designed di-cationic systems may be viable in the gas phase.

11.
J Phys Chem A ; 126(27): 4465-4475, 2022 Jul 14.
Artigo em Inglês | MEDLINE | ID: mdl-35767462

RESUMO

Considering the recent findings of linear doublet (2Σ+) MgCnH isomers (n = 2, 4, and 6) in the evolved carbon star IRC+10216, various structural isomers of MgC3H and MgC3H+ are theoretically investigated here. For MgC3H, 11 doublet and 8 quartet stationary points ranging from 0.0 to 71.8 and 0.0 to 110.1 kcal mol-1, respectively, have been identified initially at the UωB97XD/6-311++G(2d,2p) level. To get accurate relative energies, further energy evaluations are carried out for all isomers with coupled cluster methods and thermochemical modules such as G3//B3LYP, G4MP2, and CBS-QB3 methods. Unlike the even series, where the global minima are linear molecules with a Mg atom at one end, in the case of MgC3H, the global minimum geometry turns out to be a cyclic isomer, 2-magnesabicyclo[1.1.0]but-1,3,4-triyl (1, C2v, 2A1). In addition, five low-lying isomers, magnesium-substituted cyclopropenylidene (2, Cs, 2A'), 1-magnesabut-2,3-dien-1-yl-4-ylidene (3, Cs, 2A″), 1-magnesabut-2-yn-1-yl-4-ylidene (4, Cs, 2A″), 2λ3-magnesabicyclo[1.1.0]but-1,3-diyl-4-ylidene (5, C2v;, 2A1), and 1-magnesabut-2,3-dien-2-yl-4-ylidene (6, C∞v, 2Σ+), were also identified. The doublet linear isomer of MgC3H, 1-magnesabutatrienyl (10, C∞v, 2Σ+) turns out to be a minimum but lies 54.1 kcal mol-1 above 1 at the ROCCSD(T)/cc-pVTZ level. The quartet (4Σ+) electronic state of 10 was also found to be a minimum, but it lies 8.0 kcal mol-1 above 1 at the same level. Among quartets, isomer 10 is the most stable molecule. The next quartet electronic state (of isomer 11) is 34.4 kcal mol-1 above 10, and all other quartet electronic states of other isomers are not energetically close to low-lying doublet isomers 2 to 6. Overall, the chemical space of MgC3H contains more cyclic isomers (1, 2, and 3) on the low-energy side unlike their even-numbered MgCnH counterparts (n = 2, 4, and 6). Though the quartet electronic state of 10 is linear, it is not the global minimum geometry on the MgC3H potential energy surface. Isomerization pathways among the low-lying isomers (doublets of 1-4 and a quartet of 10) reveal that these molecules are kinetically stable. For the cation, MgC3H+, the cyclic isomers (1+, 2+, and 3+) are on the low-energy side. The singlet linear isomer, 10+, is a fourth-order saddle point. The low-lying cations are quite polar, with dipole moment values of >7.00 D. The current theoretical data would be helpful to both laboratory astrophysicists and radioastronomers for further studies on the MgC3H0/+ isomers.

12.
Phys Chem Chem Phys ; 24(19): 11680-11686, 2022 May 18.
Artigo em Inglês | MEDLINE | ID: mdl-35506427

RESUMO

Though search algorithms are appropriate tools for identifying low-energy isomers, fixing several constraints seems to be a fundamental prerequisite to successfully running any structural search program. This causes some potential setbacks as far as identifying all possible isomers, close to the lowest-energy isomer, for any elemental composition. The number of explored candidates, the choice of method, basis set, and availability of CPU time needed to analyze the various initial test structures become necessary restrictions in resolving the issues of structural isomerism reasonably. While one could arrive at new structures through chemical intuition, reproducing or achieving those exact same structures requires increasing the number of variables in any given program, which causes further constraints in exploring the potential energy surface in a reasonable amount of time. Thus, it is emphasized here that an integrated approach between search algorithms and chemical intuition is necessary by taking the C12O2Mg2 system as an example. Our initial search through the AUTOMATON program yielded 1450 different geometries. However, through chemical intuition, we found eighteen new geometries within 40.0 kcal mol-1 at the PBE0-D3/def2-TZVP level. These results indirectly emphasize that an integrated approach between search algorithms and chemical intuition is necessary to further our knowledge in chemical space for any given elemental composition.


Assuntos
Algoritmos , Intuição , Isomerismo
13.
Dalton Trans ; 51(11): 4338-4353, 2022 Mar 15.
Artigo em Inglês | MEDLINE | ID: mdl-35191437

RESUMO

Four copper(II)-flavonolate compounds of type [Cu(LR)(fla)] {where LR = 2-(p-R-benzyl(dipyridin-2-ylmethyl)amino)acetate; R = -OMe (1), -H (2), -Cl (3) and -NO2 (4)} have been developed as a structural and functional enzyme-substrate (ES) model of the Cu2+-containing quercetin 2,4-dioxygenase enzyme. The ES model complexes 1-4 are synthesized by reacting 3-hydroxyflavone in the presence of a base with the respective acetate-bound copper(II) complexes, [Cu(LR)(OAc)]. In the presence of dioxygen the ES model complexes undergo enzyme-type oxygenolysis of flavonolate (dioxygenase type bond cleavage reaction) at 80 °C in DMF. The reactivity shows a substituent group dependent order as -OMe (1) > -H (2) > -Cl (3) > -NO2 (4). Experimental and theoretical studies suggest a single-electron transfer (SET) from flavonolate to dioxygen, rather than valence tautomerism {[CuII(fla-)] ↔ [CuI(fla˙)]}, to generate the reactive flavonoxy radical (fla˙) that reacts further with the superoxide radical to bring about the oxygenative ring opening reaction. The SET pathway has been further verified by studying the dioxygenation reaction with a redox-inactive Zn2+ complex, [Zn(LOMe)(fla)] (5).


Assuntos
Complexos de Coordenação/metabolismo , Cobre/metabolismo , Flavonóis/metabolismo , Oxigênio/metabolismo , Complexos de Coordenação/síntese química , Complexos de Coordenação/química , Cobre/química , Dioxigenases/química , Dioxigenases/metabolismo , Transporte de Elétrons , Elétrons , Flavonóis/química , Ligantes , Estrutura Molecular , Oxigênio/química , Quercetina/química , Quercetina/metabolismo
14.
J Phys Chem A ; 126(8): 1345-1359, 2022 Mar 03.
Artigo em Inglês | MEDLINE | ID: mdl-35188378

RESUMO

Nanoclusters are materials of paramount catalytic importance. Among various unique properties featured by nanoclusters, a pronounced relativistic effect can be a decisive parameter in governing their catalytic activity. A concise study delineating the role of relativistic effects in nanocluster catalysis is carried by investigating the oxygen reduction reaction (ORR) activity of a Pt7 subnanometer cluster. Global optimization analysis shows the critical role of spin-orbit coupling (SOC) in regulating the relative stability between structural isomers of the cluster. An overall improved ORR adsorption energetics and differently scaled adsorption-induced structural changes are identified with SOC compared to a non-SOC scenario. Ab initio atomistic thermodynamics analysis predicted nearly identical phase diagrams with significant structural differences for high coverage oxygenated clusters under realistic conditions. Though inclusion of SOC does not bring about drastic changes in the overall catalytic activity of the cluster, it is having a crucial role in governing the rate-determining step, transition-state configuration, and energetics of elementary reaction pathways. Furthermore, a statistical ensemble-based approach illustrates the strong contribution of low-energy local minimum structural isomers to the total ORR activity, which is significantly scaled up along the activity improving direction within the SOC framework. The study provides critical insights toward the importance of relativistic effects in determining various catalytic activity relevant features of nanoclusters.

15.
Chem Commun (Camb) ; 58(16): 2754-2757, 2022 Feb 22.
Artigo em Inglês | MEDLINE | ID: mdl-35128556

RESUMO

A phenothiazine-based photoremovable protecting group (PRPG) for single and dual release of carboxylic acids was developed. The change in the oxidation state of the sulfur atom of the phenothiazine PRPG resulted in singlet oxygen generation, rather than photorelease. The difference in the photochemistry between oxygen-free and oxygen-functionalized phenothiazine was investigated and supported by DFT calculations.

16.
J Org Chem ; 87(6): 3910-3921, 2022 03 18.
Artigo em Inglês | MEDLINE | ID: mdl-35130698

RESUMO

The reductive Heck cyclization of nonracemic benzylidene γ-butyrolactone is studied toward the asymmetric synthesis of aryltetralin lignans, where the stereochemistry of the benzylidene lactone is found to control the mode of cyclization. The Z-isomer undergoes mostly 6-endo-cyclization and provides the desired (-)-isopodophyllotoxin along with a minor amount of 5-exo-cyclized product, but the E-isomer goes through exclusively 5-exo-cyclization, leading to the undesired dihydroindenolactone compound instead of (-)-podophyllotoxin. The experimental results are well-supported by the DFT studies.


Assuntos
Lignanas , 4-Butirolactona , Ciclização , Lignanas/química , Modelos Teóricos , Estrutura Molecular , Podofilotoxina
17.
J Biomol Struct Dyn ; 40(24): 14188-14203, 2022.
Artigo em Inglês | MEDLINE | ID: mdl-34842505

RESUMO

In the present work we have developed one mononuclear Zn(II) complex [Zn(L)(H2O)] (Complex 1) by utilizing a tetracoordinated ligand H2L, formed by simple condensation of 2, 2 dimethyl 1,3 diamino propane and 3- ethoxy salicylaldehyde and one newly designed mononuclear Co (III) complex [Co(L)(L1)] (complex 2) by utilizing (H2L) and 3- ethoxy salicylaldehyde(HL1) as an ancillary ligand. The newly developed complex 2 have been spectroscopically characterized. An interesting phenomenon has been noticed that in presence of ancillary ligand, the solubility in buffer solution and the thermal stability of complex 2 comparatively increases than 1. To check the effect of ancillary ligand, present in complex 2 towards the DNA and HSA binding efficacy, both the complexes have been taken into consideration to inspect their binding potentiality with the macromolecules. The 'on', 'off' fluorescence changes in presence of DNA and HSA, the binding constant values, obtained from electronic spectral titration, iodide induced quenching, competitive binding assay, circular dichroism (CD) spectral titration, time resolved fluorescence experiment unambiguously assure the better binding efficacy of complex 2 with the signal of minor groove binding mode with DNA along with no significant conformational changes of the macromolecules. The strong and spontaneous binding of complex 2 with CT-DNA is further supported by the Isothermal Titration Calorimetry (ITC) study. Furthermore TDDFT calculation of DNA with and without complex 2 significantly authorize the formation of complex 2-DNA adduct during the association. Finally Molecular Docking study properly verifies the experimental findings and provides justified explanation behinds experimental findings.


Assuntos
DNA , Zinco , Simulação de Acoplamento Molecular , Espectrometria de Fluorescência , Ligantes , DNA/química , Dicroísmo Circular
18.
J Comput Chem ; 42(27): 1944-1958, 2021 Oct 15.
Artigo em Inglês | MEDLINE | ID: mdl-34309891

RESUMO

Metal nanoclusters are an important class of materials for catalytic applications. Sub nanometer clusters are relatively less explored for their catalytic activity on account of undercoordinated surface structure. Taking this into account, we studied platinum-based sub nanometer clusters for their catalytic activity for oxygen reduction reaction (ORR). A comprehensive analysis with global optimization is carried out for structural prediction of the platinum clusters. The energetic and electronic properties of interactions of clusters with reaction intermediates are investigated. The role of structural sensitivity in the dynamics of clusters is unraveled, and unique intermediate specific interactions are identified. ORR energetics is examined, and exceptional activity for sub nanometer clusters are observed. An inverse size versus activity relationship is identified, challenging the conventional trends followed by larger nanoclusters. The principal role of atomicity in governing the catalytic activity of nanoclusters is illustrated. The structural norms governing the sub nanometer cluster activity are shown to be markedly different from larger nanoclusters.

19.
J Mol Graph Model ; 105: 107863, 2021 06.
Artigo em Inglês | MEDLINE | ID: mdl-33588353

RESUMO

We have carried out the design and theoretical investigation of a series of trinitromethane derivatives of three-membered heterocyclic ring compounds - aziridine, 1H-azirine, diaziridine, 1H-diazirine, triaziridine, 1H-triazirene, oxaziridine, oxadiaziridine, dioxaziridine, oxirane, and dioxirane - in search for new high energy density materials (HEDM). We have estimated the properties relevant to HEDMs of the proposed molecules using Density Functional Theory (B3LYP/aug-cc-pVDZ). The results show that most of the molecules have a high value of solid-phase heat of formation, crystal density, detonation velocity and pressure with satisfying values for impact sensitivities. We have identified some of these molecules, 1-(triinitromethyl)diaziridine, 2-(trinitromethyl)-1-nitro-1H-azirine, and (2-(trinitromethyl)-3-nitrooxirane) are potential candidates of energetic molecules among the 60 molecules we investigated. As most of them are having a high positive oxygen balance, they can be recommended for use as oxidisers in solid propellants.


Assuntos
Compostos Heterocíclicos , Temperatura Alta
20.
Org Lett ; 22(17): 6998-7002, 2020 09 04.
Artigo em Inglês | MEDLINE | ID: mdl-32820928

RESUMO

The ß-carboline moiety, substituted at the C1 and C3 benzylic positions with a leaving group, has been demonstrated for the first time as a photoremovable protecting group for time-dependent sequential release of two (same or different) carboxylic acids upon one- and two-photon light irradiation. Density functional theory calculations suggest that the electronic environment of the ß-carboline moiety at C1 and C3 positions plays a key role in the rate of photorelease.

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