Super-SILAC Quantitative Proteome Profiling of Zebrafish Larvae.

The super-SILAC approach enables the quantitative proteome profiling of highly complex samples such as biological tissues or whole organisms. In this approach, a super-SILAC mix consisting of heavy isotope-labeled cells representative of the tissue or organism to be analyzed is mixed with the unlabeled samples of interest, such that the labeled proteins act as a spike-in standard, thus allowing the relative quantification of proteins between the samples of interest. In this chapter, we thoroughly describe the protocol to carry out the super-SILAC approach using a common in vivo model such as zebrafish larvae.

Interaction between humic substances and arsenic species simulating environmental conditions.

The importance of evaluating how natural organic matter influences the mobility of arsenic species in an ecosystem is an environmental concern. This work aimed to evaluate the interaction between humic substances (HS) and four arsenic species of high toxicity [As(III), As(V), MMA(V), and DMA(V)] (HS-As) under the influence of HS concentration and pH. Next, the complexing capacity (CC) of HS by As(III) was determined in function of pH, ionic strength and co-existing ions. The free arsenic (Asfree) was determined after a tangential flow ultrafiltration procedure by hydride generation atomic fluorescence spectrometry. The better HS-As interactions for As(III) and As(V) at pH 10.5 reached 52% and 61%, respectively. The increase in pH and ionic strength, as well as co-existing ions increased the CC, which reached 1.57 mg of As(III) g-1 HS. We proposed a HS-As interaction model based on the inner and outer binding sites of HS from these results. The inner sites were occupied through hydrogen bonds, Pearson acid-base, hydrophobic, and van der Waals interactions for trivalent arsenic species, while the interactions through the outer sites for pentavalent arsenic species were mostly by hydrogen bonds and electrostatic forces. According to ecotoxicological studies against Artemia salina, the presence of HS decreased the toxicity of As(III) and As(V) as the lethal concentration increased from 5.81 to 8.82 mg L-1 and from 8.82 to 13.37 mg L-1, respectively. From the results through the proposed model, it was possible to successfully understand the interaction dynamic between soil HS and As(III), As(V), MMA(V) and DMA(V) under simulated environmental conditions.

Integration of Transcriptomics and Metabolomics to Reveal the Molecular Mechanisms Underlying Rhodium Nanoparticles-Based Photodynamic Cancer Therapy.

Rhodium nanoparticles have recently been described as promising photosensitizers due to their low toxicity in the absence of near-infrared irradiation, but their high cytotoxicity when irradiated. Irradiation is usually carried out with a laser source, which allows the treatment to be localized in a specific area, thus avoiding undesirable side effects on healthy tissues. In this study, a multi-omics approach based on the combination of microarray-based transcriptomics and mass spectrometry-based untargeted and targeted metabolomics has provided a global picture of the molecular mechanisms underlying the anti-tumoral effect of rhodium nanoparticle-based photodynamic therapy. The results have shown the ability of these nanoparticles to promote apoptosis by suppressing or promoting anti- and pro-apoptotic factors, respectively, and by affecting the energy machinery of tumor cells, mainly blocking the ß-oxidation, which is reflected in the accumulation of free fatty acids and in the decrease in ATP, ADP and NAD+ levels.

Integration of untargeted and targeted mass spectrometry-based metabolomics provides novel insights into the potential toxicity associated to surfynol.

The intake of toxic compounds through the diet as a result of migration processes from food packaging is of increasing concern. It has been shown that the surfactant commercially known as surfynol, which is commonly used in food-contact materials, is capable of migrating from multilayer containers into the food, reaching potentially harmful concentration levels. In the present study, the integration of an untargeted and a targeted metabolomics approach has been carried out using NTERA-2 germinal cells as in-vitro model, to make further progress in elucidating the molecular mechanisms associated with the toxicity of surfynol. This study has allowed the identification of different altered metabolites mainly related with energy-acquiring, cell development and cellular defense mechanisms. While glutamine, L-threonine, propanoate, octadecanoate and carbamate were found at higher concentrations in cells exposed tu surfynol, L-valine, oxalate, phosphate, phenylalanine and myoinositol were found inhibited. Additionally, concentrations of ATP, ADP and NAD+ were found significantly inhibited, supporting the idea that surfynol induces glycolysis inactivation. The results obtained strengthen the evidence of the toxicity associated to surfynol; therefore, reinforcing the need for a more comprehensive study on the viability of its use in food packaging.

Rhodium Nanoparticles as a Novel Photosensitizing Agent in Photodynamic Therapy against Cancer.

Photodynamic therapy (PDT) is a promising alternative treatment for different types of cancer due to its high selectivity, which prevents healthy tissues from being damaged. The use of nanomaterials in PDT has several advantages over classical photosensitizing agents, due to their unique properties and their capacity for functionalization. Especially interesting is the use of metallic nanoparticles, which are capable of absorbing electromagnetic radiation and either transferring this energy to oxygen molecules for the generation of reactive oxygen species (ROS) or dissipating it as heat. Although previous reports have demonstrated the capacity of Rh derivatives to serve as anti-tumor drugs, to the best of our knowledge there have been no studies on the potential use of small-sized Rh nanoparticles as photosensitizers in PDT. In this study, 5 nm Rh nanoparticles have been synthesized and their potential in PDT has been evaluated. The results show that treatment with Rh nanoparticles followed by NIR irradiation induces apoptosis in cancer cells through a p53-independent mechanism.

Analytical and bioanalytical approaches to unravel the selenium-mercury antagonism: a review.

Mercury is a well-known risk to ecosystems and human health. Considering that no effective treatment is available to counteract mercury toxicity, the effectiveness of different trace elements, agents and nutrients with antioxidant properties to protect or reverse mercury toxicity is crucial. In this article we present the main analytical and bioanalytical strategies that have been used to study the potential of selenium as a protective agent against mercury-induced toxicity. We review the different seleno-species and routes of administration tested, and consider the analytical approaches used to evaluate the influence of selenium on the uptake and assimilation of mercury by model animals. In addition, we describe a variety of methods for toxicity assessment that have been used to elucidate the antagonism mercury-selenium, and critically review the main results obtained to date. Future potential research interests that could provide a clearer picture of this phenomenon are also presented.