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1.
Sci Total Environ ; 912: 169561, 2024 Feb 20.
Artigo em Inglês | MEDLINE | ID: mdl-38142994

RESUMO

The use of urban wastewater reclaimed water has recently increased across the globe to restore stream environmental flows and mitigate the effects of water scarcity. Reclaimed water is disinfected using different treatments, but their effects into the receiving rivers are little studied. Physiological bioassays and biomarkers can detect sub-lethal effects on target species, but do not provide information on changes in community structure. In contrast, official monitoring programs use community structure information but often at coarse taxonomic resolution level that may fail to detect species level impacts. Here, we combined commonly used biomonitoring approaches from organism physiology to community species composition to scan a broad range of effects of disinfection of reclaimed water by UV-light only and both UV/chlorine on the biota. We (1) performed bioassays in one laboratory species (water flea Daphnia magna) and measured biomarkers in two wild species (caddisfly Hydropsyche exocellata and the barbel Luciobarbus graellsii), (2) calculated standard indices of biotic quality (IBQ) for diatoms, benthic macroinvertebrates, and fishes, and (3) analysed community species composition of eukaryotes determined by Cytochrome Oxidase C subunit I (cox1) metabarcoding. Only the UV/chlorine treatment caused significant changes in feeding rates of D. magna and reduced antioxidant defenses, increased anaerobic metabolism and altered the levels of lipid peroxidiation in H. exocellata. However, inputs of reclaimed water were significantly associated with a greater proportion of circulating neutrophils and LG-PAS cells in L. graellsii. Despite IBQ did not discriminate between the two water treatments, metabarcoding data detected community composition changes upon exposure to UV/chlorine reclaimed water. Overall, despite the effects of UV/chlorine-treated water were transient, our study suggests that UV-light treated is less harmful for freshwater biota than UV/chlorine-treated reclaimed water, but those effects depend of the organizational level.


Assuntos
Águas Residuárias , Purificação da Água , Animais , Cloro/química , Insetos , Desinfecção , Cloretos , Biota , Rios
2.
Syst Biol ; 72(5): 998-1012, 2023 11 01.
Artigo em Inglês | MEDLINE | ID: mdl-37474131

RESUMO

Natural selection plays a key role in deterministic evolution, as clearly illustrated by the multiple cases of repeated evolution of ecomorphological characters observed in adaptive radiations. Unlike most spiders, Dysdera species display a high variability of cheliceral morphologies, which has been suggested to reflect different levels of specialization to feed on isopods. In this study, we integrate geometric morphometrics and experimental trials with a fully resolved phylogeny of the highly diverse endemic species from the Canary Islands to 1) quantitatively delimit the different cheliceral morphotypes present in the archipelago, 2) test their association with trophic specialization, as reported for continental species, 3) reconstruct the evolution of these ecomorphs throughout the diversification of the group, 4) test the hypothesis of convergent evolution of the different morphotypes, and 5) examine whether specialization constitutes a case of evolutionary irreversibility in this group. We show the existence of 9 cheliceral morphotypes and uncovered their significance for trophic ecology. Further, we demonstrate that similar ecomorphs evolved multiple times in the archipelago, providing a novel study system to explain how convergent evolution and irreversibility due to specialization may be combined to shape phenotypic diversification in adaptive radiations.


Assuntos
Evolução Biológica , Aranhas , Animais , Filogenia , Espanha , Ecologia
3.
J Mech Behav Biomed Mater ; 140: 105729, 2023 04.
Artigo em Inglês | MEDLINE | ID: mdl-36801780

RESUMO

The true stress-true strain curves of 11 Australian spider species from the Entelegynae lineage were tensile tested and classified based on the values of the alignment parameter, α*, in the framework of the Spider Silk Standardization Initiative (S3I). The application of the S3I methodology allowed the determination of the alignment parameter in all cases, and were found to range between α* = 0.03 and α* = 0.65. These data, in combination with previous results on other species included in the Initiative, were exploited to illustrate the potential of this approach by testing two simple hypotheses on the distribution of the alignment parameter throughout the lineage: (1) whether a uniform distribution may be compatible with the values obtained from the studied species, and (2) whether any trend may be established between the distribution of the α* parameter and phylogeny. In this regard, the lowest values of the α* parameter are found in some representatives of the Araneidae group, and larger values seem to be found as the evolutionary distance from this group increases. However, a significant number of outliers to this apparent general trend in terms of the values of the α* parameter are described.


Assuntos
Seda , Aranhas , Animais , Resistência à Tração , Austrália
4.
J Morphol ; 283(11): 1425-1438, 2022 11.
Artigo em Inglês | MEDLINE | ID: mdl-36169046

RESUMO

Understanding what drives the existing phenotypic variability has been a major topic of interest for biologists for generations. However, the study of the phenotype may not be straightforward. Indeed, organisms may be interpreted as composite objects, comprising different ecophenotypic traits, which are neither necessarily independent from each other nor do they respond to the same evolutionary pressures. For this reason, a deep biological understanding of the focal organism is essential for any morphological analysis. The spider genus Dysdera provides a particularly well-suited system for setting up protocols for morphological analyses that encompass a suit of morphological structures in any nonmodel system. This genus has undergone a remarkable diversification in the Canary Islands, where different species perform different ecological roles, exhibiting different levels of trophic specialization or troglomorphic adaptations, which translate into a remarkable interspecific morphological variability. Here, we seek to develop a broad guide, of which morphological characters must be considered, to study the effect of different ecological pressures in spiders and propose a general workflow that will be useful whenever researchers set out to investigate variation in the body plans of different organisms, with data sets comprising a set of morphological traits. We use geometric morphometric methods to quantify variation in different body structures, all of them with diverse phenotypic modifications in their chelicera, prosoma, and legs. We explore the effect of analyzing different combined landmark (LM) configurations of these characters and the degree of morphological integration that they exhibit. Our results suggest that different LM configurations of each of these body parts exhibit a higher degree of integration compared to LM configurations from different structures and that the analysis of each of these body parts captures different aspects of morphological variation, potentially related to different ecological factors.


Assuntos
Aranhas , Animais , Aranhas/anatomia & histologia , Filogenia , Evolução Biológica , Fenótipo
5.
Mol Ecol Resour ; 22(6): 2319-2332, 2022 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-35466537

RESUMO

Although arthropods are the largest component of animal diversity, they are traditionally underrepresented in biological inventories and monitoring programmes. However, no biodiversity assessment can be considered informative without including them. Arthropod immature stages are often discarded during sorting, despite frequently representing more than half of the collected individuals. To date, little effort has been devoted to characterising the impact of discarding nonadult specimens on our diversity estimates. Here, we used a metabarcoding approach to analyse spiders from oak forests in the Iberian Peninsula, to assess (1) the contribution of juvenile stages to local diversity estimates, and (2) their effect on the diversity patterns (compositional differences) across assemblages. We further investigated the ability of metabarcoding to inform on abundance. We obtained 363 and 331 species as adults and juveniles, respectively. Including the species represented only by juveniles increased the species richness of the whole sampling in 35% with respect to those identified from adults. Differences in composition between assemblages were greatly reduced when immature stages were considered, especially across latitudes, possibly due to phenological differences. Moreover, our results revealed that metabarcoding data are to a certain extent quantitative, but some sort of taxonomic conversion factor may be necessary to provide accurate informative estimates. Although our findings do not question the relevance of the information provided by adult-based inventories, they also reveal that juveniles provide a novel and relevant layer of knowledge that, especially in areas with marked seasonality, may influence our interpretations, providing more accurate information from standardised biological inventories.


Assuntos
Artrópodes , Aranhas , Animais , Biodiversidade , Código de Barras de DNA Taxonômico/métodos , Florestas , Aranhas/genética
6.
Zookeys ; 1086: 84-135, 2022.
Artigo em Inglês | MEDLINE | ID: mdl-35221746

RESUMO

Because of their ability for aerial dispersal using silk and preference for open habitats, many wolf spiders are formidable colonisers. Pioneering arachnologists were already aware of the large and colourful wolf spiders in the Madeira archipelago, currently included in the genus Hogna Simon, 1885. The origins were investigated and species boundaries of Madeiran Hogna examined by integrating target-gene and morphological information. A multi-locus phylogenetic analysis of a thorough sampling across wolf-spider diversity suggested a single origin of Madeiran endemics, albeit with low support. Divergence time estimation traced back their origin to the late Miocene, a time of major global cooling that drove the expansion of grasslands and the associated fauna. Morphological examination of types and newly collected material revealed a new species, hereby described as H.isambertoi Crespo, sp. nov. Additionally, H.blackwalli is revalidated and three new synonymies are proposed, namely H.biscoitoi Wunderlich, 1992, junior synonym of H.insularum Kulczynski, 1899, H.schmitzi Wunderlich, 1992, junior synonym of H.maderiana (Walckenaer, 1837), and Arctosamaderana Roewer, 1960 junior synonym of H.ferox (Lucas, 1838). Species delimitation analyses of mitochondrial and nuclear markers provided additional support for morphological delineations. The species pair H.insularum and H.maderiana, however, constituted an exception: the lack of exclusive haplotypes in the examined markers, along with the discovery of intermediate forms, pointed to hybridisation between these two species as reported in other congeneric species on islands. Finally, the conservation status of the species is discussed and candidates for immediate conservation efforts are identified.

7.
Mol Ecol Resour ; 22(1): 375-390, 2022 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-34268885

RESUMO

Here, we present the chromosome-level genome assembly of Dysdera silvatica Schmidt, 1981, a nocturnal ground-dwelling spider endemic from the Canary Islands. The genus Dysdera has undergone a remarkable diversification in this archipelago mostly associated with shifts in the level of trophic specialization, becoming an excellent model to study the genomic drivers of adaptive radiations. The new assembly (1.37 Gb; scaffold N50 of 174.2 Mb), was performed using the chromosome conformation capture scaffolding technique, represents a continuity improvement of more than 4500 times with respect to the previous version. The seven largest scaffolds or pseudochromosomes, which cover 87% of the total assembly size, probably correspond with the seven chromosomes of the karyotype of this species, including a characteristic large X chromosome. To illustrate the value of this new resource we performed a comprehensive analysis of the two major arthropod chemoreceptor gene families (i.e., gustatory and ionotropic receptors). We identified 545 chemoreceptor sequences distributed across all pseudochromosomes, with a notable underrepresentation in the X chromosome. At least 54% of them localize in 83 genomic clusters with a significantly lower evolutionary distances between them than the average of the family, suggesting a recent origin of many of them. This chromosome-level assembly is the first high-quality genome representative of the Synspermiata clade, and just the third among spiders, representing a new valuable resource to gain insights into the structure and organization of chelicerate genomes, including the role that structural variants, repetitive elements and large gene families played in the extraordinary biology of spiders.


Assuntos
Aracnídeos , Aranhas , Animais , Cromossomos , Genômica , Humanos , Espanha , Aranhas/genética
8.
Cladistics ; 37(3): 317-342, 2021 06.
Artigo em Inglês | MEDLINE | ID: mdl-34478200

RESUMO

We report on the colonization and diversification of linyphiid spiders in the Pacific oceanic archipelago of Juan Fernandez. About 50 spider species occur naturally in these islands, most of them endemic and about half of them are linyphiids. Linyphiidae includes no fewer than 15 species of Laminacauda and three of Neomaso (with several additional undescribed species in the latter genus), all of them single island endemics. There are three additional linyphiid endemic genera, two monotypic and one, Juanfernandezia, with two species. Unlike the rather uniform somatic morphology and small ground sheet webs of the continental Laminacauda and Neomaso species, the Juan Fernandez endemics exhibit morphological features and life history traits that are very rare or unknown in any other linyphiids. A multi-locus phylogenetic analysis confirms at least five independent Juan Fernandez colonizations of Linyphiidae, two within the same genus, and three of which underwent subsequent local diversification. Different calibrations suggest alternative colonization timelines, some at odds with island ages, but all agree on similar diversification timings of the endemic lineages. Rare phenotypic traits (e.g. gigantism, massive chelicerae or elongated legs) evolved multiple times independently within the islands. Based on the remarkable levels of eco-phenotypic differentiation in locally diversified species showing densely packed distributions, we propose that Laminacauda, and probably Neomaso, constitute a case of adaptive radiation.


Assuntos
Adaptação Fisiológica , Biodiversidade , Evolução Biológica , Fenótipo , Filogenia , Aranhas/fisiologia , Animais , Geografia , Oceano Pacífico , Aranhas/anatomia & histologia , Aranhas/efeitos da radiação
9.
Cladistics ; 37(3): 298-316, 2021 06.
Artigo em Inglês | MEDLINE | ID: mdl-34478199

RESUMO

High throughput sequencing and phylogenomic analyses focusing on relationships among spiders have both reinforced and upturned long-standing hypotheses. Likewise, the evolution of spider webs-perhaps their most emblematic attribute-is being understood in new ways. With a matrix including 272 spider species and close arachnid relatives, we analyze and evaluate the relationships among these lineages using a variety of orthology assessment methods, occupancy thresholds, tree inference methods and support metrics. Our analyses include families not previously sampled in transcriptomic analyses, such as Symphytognathidae, the only araneoid family absent in such prior works. We find support for the major established spider lineages, including Mygalomorphae, Araneomorphae, Synspermiata, Palpimanoidea, Araneoidea and the Retrolateral Tibial Apophysis Clade, as well as the uloborids, deinopids, oecobiids and hersiliids Grade. Resulting trees are evaluated using bootstrapping, Shimodaira-Hasegawa approximate likelihood ratio test, local posterior probabilities and concordance factors. Using structured Markov models to assess the evolution of spider webs while accounting for hierarchically nested traits, we find multiple convergent occurrences of the orb web across the spider tree-of-life. Overall, we provide the most comprehensive spider tree-of-life to date using transcriptomic data and use new methods to explore controversial issues of web evolution, including the origins and multiple losses of the orb web.


Assuntos
Evolução Biológica , Proteínas de Insetos/genética , Filogenia , Comportamento Predatório/fisiologia , Aranhas/classificação , Transcriptoma , Animais , Aranhas/genética , Aranhas/fisiologia
10.
Zootaxa ; 4979(1): 131146, 2021 May 28.
Artigo em Inglês | MEDLINE | ID: mdl-34187009

RESUMO

Zootaxa published more than a thousand papers on Araneae from 2002 to the present, including descriptions of 3,833 new spider species and 177 new genera. Here we summarise the key contributions of Zootaxa to our current knowledge of global spider diversity. We provide a historical account of the researchers that have actively participated as editors, and recognize the more than 1,000 reviewers without whom none of this would have been possible. We conduct a simple analysis of the contributions by authors and geographic region, which allows us to uncover some of the underlying trends in current spider taxonomy. In addition, we examine some of the milestones in twenty years of spider systematic research in Zootaxa. Finally, we discuss future prospects of spider taxonomy and the role that Zootaxa and its younger sister journal Megataxa will play in it. We would like to dedicate this contribution to the memory of Norman I. Platnick, a crucial figure in the advancement of spider systematics.


Assuntos
Aranhas/classificação , Animais , Biodiversidade , Publicações Periódicas como Assunto
11.
Funct Plant Biol ; 48(7): 732-742, 2021 06.
Artigo em Inglês | MEDLINE | ID: mdl-34099101

RESUMO

The distributions of CAM and C3 epiphytic bromeliads across an altitudinal gradient in western Panama were identified from carbon isotope (δ13C) signals, and epiphyte water balance was investigated via oxygen isotopes (δ18O) across wet and dry seasons. There were significant seasonal differences in leaf water (δ18Olw), precipitation, stored 'tank' water and water vapour. Values of δ18Olw were evaporatively enriched at low altitude in the dry season for the C3 epiphytes, associated with low relative humidity (RH) during the day. Crassulacean acid metabolism (CAM) δ18Olw values were relatively depleted, consistent with water vapour uptake during gas exchange under high RH at night. At high altitude, cloudforest locations, C3 δ18Olw also reflected water vapour uptake by day. A mesocosm experiment with Tillandsia fasciculata (CAM) and Werauhia sanguinolenta (C3) was combined with simulations using a non-steady-state oxygen isotope leaf water model. For both C3 and CAM bromeliads, δ18Olw became progressively depleted under saturating water vapour by day and night, although evaporative enrichment was restored in the C3 W. sanguinolenta under low humidity by day. Source water in the overlapping leaf base 'tank' was also modified by evaporative δ18O exchanges. The results demonstrate how stable isotopes in leaf water provide insights for atmospheric water vapour exchanges for both C3 and CAM systems.


Assuntos
Vapor , Água , Isótopos de Oxigênio , Panamá , Folhas de Planta
12.
Zootaxa ; 4869(4): zootaxa.4869.4.3, 2020 Nov 04.
Artigo em Inglês | MEDLINE | ID: mdl-33311343

RESUMO

A new gall wasp species, Cerroneuroterus yukawamasudai Pujade-Villar Melika sp. nov., is described from China. The asexual generation induces leaf lenticular galls, and the sexual generation induces catkin galls on Q. acutissima and Q. variabilis. Sexual females and males are not described yet. Data on the diagnosis, distribution, and biology of the new species are provided, including a key to sexual and asexual females of all described Cerroneuroterus species. Previous misidentifications of host galls recorded in Japan are commented on. Molecular analyses were performed to assess the validity of the genus Cerroneuroterus and the affiliation of the new species.


Assuntos
Himenópteros , Vespas , Animais , Feminino , Folhas de Planta
13.
Zootaxa ; 4808(3): zootaxa.4808.3.6, 2020 Jul 03.
Artigo em Inglês | MEDLINE | ID: mdl-33055965

RESUMO

The original description of Parandricus mairei Kieffer, 1906 included a misinterpretation of a relevant forewing trait. The species was subsequently transferred to the genus Andricus, despite presenting two very peculiar morphological characters, namely a simple tarsal claw and the absence of irradiating carinae on the lower face. Similarly, the original descriptions of Andricus deqingis Wang, Gui, Chen, 2013 and A. flavus Pujade-Villar, Wang, Guo Chen, 2014 included some relevant mistakes. Here, we present the results of a molecular analysis that reveals that individuals of the three species are genetically very similar; supporting the proposal that A. mairei is a senior synonym of the other two species, A. deqingis n. syn. and A. flavus n. syn. In addition, our results indicate that Parandricus renders Andricus paraphyletic, which supports that Parandricus is a junior synonym of Andricus. We re-describe and illustrate the relevant characters of A. mairei and provide additional comments on the characters erroneously interpreted in the former descriptions and give notes about the biology and intraspecific variability.


Assuntos
Himenópteros , Animais , China , Fenótipo
14.
Zool Stud ; 59: e8, 2020.
Artigo em Inglês | MEDLINE | ID: mdl-32760454

RESUMO

A new genus of cynipid oak gall wasp, Striatoandricus Pujade-Villar (Hymenoptera: Cynipidae: Cynipini), is described. Striatoandricus gen. nov. includes four previously described species, Andricus nievesaldreyi n. comb., A. georgei n. comb., A. maesi n. comb., and A. barriosi n. comb., which induce pubescent leaves or twig galls on Quercus belonging to Quercus section. Two new species from México are also described: S. cuixarti Pujade-Villar n. sp. and S. sanchezi Pujade-Villar n. sp. in Quercus section. Descriptions of the genus and diagnostic characters, including DNA sequence data, are presented. This new genus is supported by both morphological and molecular data.

15.
J Mech Behav Biomed Mater ; 111: 104023, 2020 11.
Artigo em Inglês | MEDLINE | ID: mdl-32818773

RESUMO

Spider silk is a natural material with unique properties and a great potential for engineering and biomedical applications. In spite of its simple composition and highly conserved and stereotypical production, spider silks show a wide range of variability in their mechanical properties which, for long, have defied their classification and standardization. Here we propose to launch the Spider Silk Standardization Initiative (S3I), a methodology based on the definition of the α* parameter, in an attempt to define a systematic procedure to classify the tensile properties exhibited by major ampullate gland silk (MAS) spun by Entelegynae spiders. The α* parameter is calculated from the comparison of the true stress-true strain curve of any MAS fiber after being subjected to maximum supercontraction, with the true stress-true strain curve of the species Argiope aurantia, which is set as a reference curve. This work presents the details of the S3I methodology and, as an example, shows its application to an assemblage of Entelegynae spiders from different families collected at the Pantanos de Villa wetlands (Lima, Peru). The systematic and objective classification of the tensile properties of MAS fibers allowed by the S3I will offer insights into key aspects of the biological evolution of the material, and address questions such as how history and adaptation contributed to shape those properties. In addition, it will surely have far reaching consequences in fields such as Materials Science, and Molecular and Evolutionary Biology, by organizing the range of tensile properties exhibited by spider silk fibers.


Assuntos
Seda , Aranhas , Animais , Peru , Padrões de Referência , Resistência à Tração , Áreas Alagadas
16.
Biodivers Data J ; 8: e49159, 2020.
Artigo em Inglês | MEDLINE | ID: mdl-32398921

RESUMO

BACKGROUND: There is an increasing demand for databases including species trait information for biodiversity and community ecology studies. The existence of trait databases is useful for comparative studies within taxa or geographical regions, but there is low availability of databases for certain organisms. Here we present an open access functional trait database for spiders from Macaronesia and the Iberian Peninsula, recording several morphological and ecological traits related to the species life histories, microhabitat and trophic preferences. NEW INFORMATION: We present a database that includes 12 biological traits for 506 spider species present in natural forests of the Iberian Peninsula (Spain) and three Macaronesian archipelagoes (Azores, Madeira and Canary Islands). The functional trait database consists of two sections:individual-level data for six morphological traits (total body size, prosoma length, prosoma width, prosoma height, tibia I length and fang length), based on direct measurements of 2844 specimens of all spider species; andspecies-level aggregate data for 12 traits (same 6 morphological traits as in the previous section plus dispersal ability, vertical stratification, circadian activity, foraging strategy, trophic specialization and colonization status), based on either the average of the direct measurements or bibliographic searches.This functional trait database will serve as a data standard for currently ongoing analyses that require trait and functional diversity statistics.

17.
Syst Biol ; 69(2): 401-411, 2020 03 01.
Artigo em Inglês | MEDLINE | ID: mdl-31165170

RESUMO

We address some of the taxonomic and classification changes proposed by Kuntner et al. (2019) in a comparative study on the evolution of sexual size dimorphism in nephiline spiders. Their proposal to recircumscribe araneids and to rank the subfamily Nephilinae as a family is fundamentally flawed as it renders the family Araneidae paraphyletic. We discuss the importance of monophyly, outgroup selection, and taxon sampling, the subjectivity of ranks, and the implications of the age of origin criterion to assign categorical ranks in biological classifications. We explore the outcome of applying the approach of Kuntner et al. (2019) to the classification of spiders with emphasis on the ecribellate orb-weavers (Araneoidea) using a recently published dated phylogeny. We discuss the implications of including the putative sister group of Nephilinae (the sexually dimorphic genus Paraplectanoides) and the putative sister group of Araneidae (the miniature, monomorphic family Theridiosomatidae). We propose continuation of the phylogenetic classification put forth by Dimitrov et al. (2017), and we formally rank Nephilinae and Phonognathinae as subfamilies of Araneidae. Our classification better reflects the understanding of the phylogenetic placement and evolutionary history of nephilines and phonognathines while maintaining the diagnosability of Nephilinae. It also fulfills the fundamental requirement that taxa must be monophyletic, and thus avoids the paraphyly of Araneidae implied by Kuntner et al. (2019).


Assuntos
Filogenia , Aranhas/classificação , Animais , Tamanho Corporal , Classificação , Caracteres Sexuais , Aranhas/anatomia & histologia
18.
Gigascience ; 8(8)2019 08 01.
Artigo em Inglês | MEDLINE | ID: mdl-31430368

RESUMO

BACKGROUND: We present the draft genome sequence of Dysdera silvatica, a nocturnal ground-dwelling spider from a genus that has undergone a remarkable adaptive radiation in the Canary Islands. RESULTS: The draft assembly was obtained using short (Illumina) and long (PaciBio and Nanopore) sequencing reads. Our de novo assembly (1.36 Gb), which represents 80% of the genome size estimated by flow cytometry (1.7 Gb), is constituted by a high fraction of interspersed repetitive elements (53.8%). The assembly completeness, using BUSCO and core eukaryotic genes, ranges from 90% to 96%. Functional annotations based on both ab initio and evidence-based information (including D. silvatica RNA sequencing) yielded a total of 48,619 protein-coding sequences, of which 36,398 (74.9%) have the molecular hallmark of known protein domains, or sequence similarity with Swiss-Prot sequences. The D. silvatica assembly is the first representative of the superfamily Dysderoidea, and just the second available genome of Synspermiata, one of the major evolutionary lineages of the "true spiders" (Araneomorphae). CONCLUSIONS: Dysderoids, which are known for their numerous instances of adaptation to underground environments, include some of the few examples of trophic specialization within spiders and are excellent models for the study of cryptic female choice. This resource will be therefore useful as a starting point to study fundamental evolutionary and functional questions, including the molecular bases of the adaptation to extreme environments and ecological shifts, as well of the origin and evolution of relevant spider traits, such as the venom and silk.


Assuntos
Genoma , Genômica , Aranhas/classificação , Aranhas/genética , Animais , Mapeamento Cromossômico , Biologia Computacional/métodos , Evolução Molecular , Ontologia Genética , Genoma Mitocondrial , Genômica/métodos , Sequenciamento de Nucleotídeos em Larga Escala , Anotação de Sequência Molecular , Fenótipo , Filogenia
19.
BMC Genomics ; 20(1): 665, 2019 Aug 23.
Artigo em Inglês | MEDLINE | ID: mdl-31438844

RESUMO

BACKGROUND: In recent years, Next Generation Sequencing (NGS) has accelerated the generation of full mitogenomes, providing abundant material for studying different aspects of molecular evolution. Some mitogenomes have been observed to harbor atypical sequences with bizarre secondary structures, which origins and significance could only be fully understood in an evolutionary framework. RESULTS: Here we report and analyze the mitochondrial sequences and gene arrangements of six closely related spiders in the sister genera Parachtes and Harpactocrates, which belong to the nocturnal, ground dwelling family Dysderidae. Species of both genera have compacted mitogenomes with many overlapping genes and strikingly reduced tRNAs that are among the shortest described within metazoans. Thanks to the conservation of the gene order and the nucleotide identity across close relatives, we were able to predict the secondary structures even on arm-less tRNAs, which would be otherwise unattainable for a single species. They exhibit aberrant secondary structures with the lack of either DHU or TΨC arms and many miss-pairings in the acceptor arm but this degeneracy trend goes even further since at least four tRNAs are arm-less in the six spider species studied. CONCLUSIONS: The conservation of at least four arm-less tRNA genes in two sister spider genera for about 30 myr suggest that these genes are still encoding fully functional tRNAs though they may be post-transcriptionally edited to be fully functional as previously described in other species. We suggest that the presence of overlapping and truncated tRNA genes may be related and explains why spider mitogenomes are smaller than those of other invertebrates.


Assuntos
Sequência Conservada , RNA Mitocondrial/genética , RNA de Transferência/genética , Aranhas/genética , Animais , Sequência de Bases , Códon de Iniciação/genética , Códon de Terminação/genética , RNA Ribossômico/genética
20.
Mol Ecol ; 28(17): 4028-4045, 2019 09.
Artigo em Inglês | MEDLINE | ID: mdl-31359512

RESUMO

The coexistence of multiple eco-phenotypes in independently assembled communities makes island adaptive radiations the ideal framework to test convergence and parallelism in evolution. In the radiation of the spider genus Dysdera in the Canary Islands, species diversification occurs concomitant with repeated events of trophic specialization. These dietary shifts, to feed primarily on woodlice, are accompanied by modifications in morphology (mostly in the mouthparts), behaviour and nutritional physiology. To gain insight into the molecular basis of this adaptive radiation, we performed a comprehensive comparative transcriptome analysis of five Canary Island Dysdera endemics representing two evolutionary and geographically independent events of dietary specialization. After controlling for the potential confounding effects of hemiplasy, our differential gene expression and selective constraint analyses identified a number of genetic changes that could be associated with the repeated adaptations to specialized diet of woodlice, including some related to heavy metal detoxification and homeostasis, the metabolism of some important nutrients and venom toxins. Our results shed light on the genomic basis of an extraordinary case of dietary shift convergence associated with species diversification. We uncovered putative molecular substrates of convergent evolutionary changes at different hierarchical levels, including specific genes, genes with equivalent functions and even particular amino acid positions. This study improves our knowledge of rapid adaptive radiations and provides new insights into the predictability of evolution.


Assuntos
Adaptação Fisiológica/genética , Evolução Biológica , Dieta , Genoma , Aranhas/genética , Substituição de Aminoácidos/genética , Animais , Regulação da Expressão Gênica , Ontologia Genética , Geografia , Fenótipo , Filogenia , Seleção Genética , Espanha , Especificidade da Espécie
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