Influence of the axial rotation angle on tool mark striations.

A tool's axial rotation influences the geometric properties of a tool mark. The larger the axial rotation angle, the larger the compression of structural details like striations. This complicates comparing tool marks at different axial rotations. Using chisels, tool marks were made from 0° to 75° axial rotation and compared using an automated approach Baiker et al. [10]. In addition, a 3D topographic surface of a chisel was obtained to generate virtual tool marks and to test whether the axial rotation angle of a mark could be predicted. After examination of the tool mark and chisel data-sets it was observed that marks lose information with increasing rotation due to the change in relative distance between geometrical details on the tool and the disappearance of smaller details. The similarity and repeatability were high for comparisons between marks with no difference in axial rotation, but decreasing with increased rotation angle from 0° to 75°. With an increasing difference in the rotation angles, the tool marks had to be corrected to account for the different compression factors between them. For compression up to 7.5%, this was obtained automatically by the tool mark alignment method. For larger compression, manually re-sizing the marks to the uncompressed widths at 0° rotation before the alignment was found suitable for successfully comparing even large differences in axial rotation. The similarity and repeatability were decreasing however, with increasing degree of re-sizing. The quality was assessed by determining the similarity at different detail levels within a tool mark. With an axial rotation up to 75°, tool marks were found to reliably represent structural details down to 100µm. The similarity of structural details below 100µm was dependent on the angle, with the highest similarity at small rotation angles and the lowest similarity at large rotation angles. Filtering to remove the details below 100µm lead to consistently higher similarity between tool marks at all angles and allowed for a comparison of marks up to 75° axial rotation. Finally, generated virtual tool mark profiles with an axial rotation were compared to experimental tool marks. The similarity between virtual and experimental tool marks remained high up to 60° rotation after which it decreased due to the loss in quality in both marks. Predicting the rotation angle is possible under certain conditions up to 45° rotation with an accuracy of 2.667±0.577° rotation.

An image-processing methodology for extracting bloodstain pattern features.

There is a growing trend in forensic science to develop methods to make forensic pattern comparison tasks more objective. This has generally involved the application of suitable image-processing methods to provide numerical data for identification or comparison. This paper outlines a unique image-processing methodology that can be utilised by analysts to generate reliable pattern data that will assist them in forming objective conclusions about a pattern. A range of features were defined and extracted from a laboratory-generated impact spatter pattern. These features were based in part on bloodstain properties commonly used in the analysis of spatter bloodstain patterns. The values of these features were consistent with properties reported qualitatively for such patterns. The image-processing method developed shows considerable promise as a way to establish measurable discriminating pattern criteria that are lacking in current bloodstain pattern taxonomies.

Combined recovery of biological and fibre traces.

We present a method in which DNA and fibre traces are jointly recovered by taping. The DNA traces are isolated by standard laboratory procedures. Fibre traces are isolated afterwards in order to improve efficiency. Two tests have been carried out to evaluate the suitability of the presented method. In the first test, possible changes in appearance of fibres due to the DNA isolation procedures are investigated. In the second test, the recovery of fibres from a contaminated surface and their possible loss due to the DNA isolation procedure are investigated. It is concluded that polyester fibres are hardly affected by the DNA isolation procedure. In contrast, a relatively large number of the investigated cotton fibres were altered. The observed differences do not indicate a structural damage to the fibre or the dyes, but rather the washing-out of some components. The observed changes may require that fibres from a known source are also exposed to the DNA isolation procedures to assess the induced changes, but do not prevent a meaningful comparison. The recovery of fibres is slightly lower than the routine procedures for fibre recovery. Therefore, it was decided to perform extra taping of the recipient in cases where fibre investigation is requested. During DNA-isolation, some of the fibres present are released from the tapes. These fibres are not lost however, as they can be found on the filter in the used DNA isolation vials.

Tracers as invisible evidence - The transfer and persistence of flock fibres during a car exchange.

This study assessed the recovery of flock fibres used as a tracer in a car exchange scenario. Flock fibres were deposited onto a car seat (or model thereof) and their transfer and persistence was investigated after a real or simulated car exchange. The overall aim of this study was to achieve an optimal use of flock fibres as tracers, i.e. to be able to select a fit-for-purpose flock fibre, to be able to predict the amount of flock fibres to be recovered from crime related items, and to be able to use these numbers to exclude accidental uptake. The effect of a number of variables on the transfer and persistence of flock fibres was studied, including flock fibre length, car upholstery, and trousers material. Laboratory based experiments were undertaken first, followed by realistic field based experiments. The flock fibres were captured in a non-destructive manner through fluorescence photography. A Matlab algorithm enabled fast automated counting of flock fibres on the images. Results indicate that an initial rapid loss of flock fibres from garments may be expected as a result of moderate movement. Although the amount of flock fibres to be recovered is affected by the flock fibre length, the type of car upholstery, and the type of trousers materials (if frictional force is taken into consideration), large numbers of flock fibres have been recovered from all target materials throughout the transfer route. These numbers are higher than the amount of flock fibres recovered due to accidental uptake. In conclusion, flock fibres can serve as invisible evidence to reconstruct a series of events.

Virtual and simulated striated toolmarks for forensic applications.

Large numbers of experimental toolmarks of screwdrivers are often required in casework of toolmark examiners and in research environments alike, to be able to recover the angle of attack of a crime scene mark and to determine statistically meaningful properties of toolmarks respectively. However, in practice the number of marks is limited by the time needed to create them. In this article, we present an approach to predict how a striated mark of a particular tool would look like, using 3D surface datasets of screwdrivers. We compare these virtual toolmarks qualitatively and quantitatively with real experimental marks in wax and show that they are very similar. In addition we study toolmark similarity, dependent on the angle of attack, with a very high angular resolution of 1°. The results show that for the tested type of screwdriver, our toolmark comparison framework yields known match similarity scores that are above the mean known non-match similarity scores, even for known match differences in angle of attack of up to 40°. In addition we demonstrate an approach to automatically recover the angle of attack of an experimental toolmark and experiments yield high accuracy and precision of 0.618 ± 4.179°. Furthermore, we present a strategy to study the structural elements of striated toolmarks using wavelet analysis, and show how to use the results to simulate realistic toolmarks.

Toolmark variability and quality depending on the fundamental parameters: Angle of attack, toolmark depth and substrate material.

The traditional way of visual toolmark comparison includes subjective judgments. Automated methods using computers are a possibility to render a comparison more objective, but they require the statistical properties, like the similarity and variability, of toolmarks to be determined quantitatively. Several parameters, that play a role during toolmark creation, are statistically analyzed in this article. We determined the same toolmark and the different toolmark similarity as well as variability of known matching toolmarks created in wax and compared the results with the similarity and variability of known non-matching toolmarks. In addition we studied the influence of the substrate materials wax and lead and the angle of attack on toolmark similarity and variability. Furthermore, we present an approach to determine toolmark quality, defined as how well structural details are preserved in the toolmark, to assist toolmark examiners in deciding, which structural details are reliable in a mark. We studied the influence of the substrate material, the angle of attack and the depth of a toolmark on the quality. The results show that for known matching toolmarks, the variability is very low within a toolmark and between toolmarks in wax, given that the parameters angle of attack and depth are held constant. Geometrical details are reliably represented down to 10-50µm and toolmark similarity is clearly higher than known non-matching similarities. The comparison of wax and lead shows that wax is a good alternative as a substrate material for experimental toolmarks, capable of reliably representing structural details down to 10-25µm. For finer details, lead is a better choice but might alter the original state of a tool. With increasing angle of attack, toolmark variability increases and toolmark quality decreases. Therefore it is advantageous to push the tool instead of pulling during toolmark creation for angles of attack above ≈45°. The quality also decreases with increasing toolmark depth, but only up to ≈300µm. Therefore toolmarks should be created as shallow as possible in the substrate material.

Recovery of spray paint traces from clothing by beating.

Manual recovery of spray paints from textiles using a microscope, the routine method in many laboratories, is often laborious. Beating the clothing with a plastic rod, the routine method used for recovery of glass traces within the authors' laboratory, is proposed as an alternative. The efficiency of the method was evaluated by spray tests with fluorescent paint. In these tests, paint particles in the acquired debris samples, as well as those remaining on the textiles, were investigated. The results show that beating is an efficient way to recover and concentrate paint particles. A good efficiency for jeans fabric and rough knitwear is reported. The results appeared to be less satisfactory for smooth woven fabric. Application of the method in casework was effective for graffiti paints as well as for flaked car paint.

Quantitative comparison of striated toolmarks.

A comparison of striated toolmarks by human examiners is dependent on the experience of the expert and includes a subjective judgment within the process. In this article an automated method is presented for objective comparison of striated marks of screwdrivers. The combination of multi-scale registration (alignment) of toolmarks, that accounts for shift and scaling, with global cross correlation as objective toolmark similarity metric renders the approach robust with respect to large differences in angle of attack and moderate toolmark compression. In addition, a strategy to distinguish between relevant and non-relevant spatial frequency ranges (geometric details) is presented. The performance of the method is evaluated using 3D topography scans of experimental toolmarks of 50 unused screwdrivers. Known match and known non-match similarity distributions are estimated including a large range of angles of attack (15, 30, 45, 60 and 75°) for the known matches. It is demonstrated that the system has high discriminatory power, even if the toolmarks are made at a difference in angle of attack of larger than 15°. The probability distributions are subsequently employed to determine likelihood ratios. A comparison of the results of the automated method with the outcome of a toolmark comparison experiment involving three experienced toolmark examiners reveals, that the automated system is more powerful in correctly supporting the hypothesis of common origin for toolmarks with a large difference in angle of attack (30°). In return, the rate of toolmark comparisons that yield incorrect support for the hypothesis of common origin is higher for the automated system. In addition, a comparison between estimating known match and known non-match distributions using 2D and 3D data is presented and it is shown that for toolmarks of unused screwdrivers, relying on 3D is slightly better than relying on 2D data. Finally, a comparison between estimating known match and known non-match distributions for two different types of screwdrivers suggests, that the method may be used for comparing marks of other tools as well.

Segmentation and visual analysis of whole-body mouse skeleton microSPECT.

Whole-body SPECT small animal imaging is used to study cancer, and plays an important role in the development of new drugs. Comparing and exploring whole-body datasets can be a difficult and time-consuming task due to the inherent heterogeneity of the data (high volume/throughput, multi-modality, postural and positioning variability). The goal of this study was to provide a method to align and compare side-by-side multiple whole-body skeleton SPECT datasets in a common reference, thus eliminating acquisition variability that exists between the subjects in cross-sectional and multi-modal studies. Six whole-body SPECT/CT datasets of BALB/c mice injected with bone targeting tracers (99m)Tc-methylene diphosphonate ((99m)Tc-MDP) and (99m)Tc-hydroxymethane diphosphonate ((99m)Tc-HDP) were used to evaluate the proposed method. An articulated version of the MOBY whole-body mouse atlas was used as a common reference. Its individual bones were registered one-by-one to the skeleton extracted from the acquired SPECT data following an anatomical hierarchical tree. Sequential registration was used while constraining the local degrees of freedom (DoFs) of each bone in accordance to the type of joint and its range of motion. The Articulated Planar Reformation (APR) algorithm was applied to the segmented data for side-by-side change visualization and comparison of data. To quantitatively evaluate the proposed algorithm, bone segmentations of extracted skeletons from the correspondent CT datasets were used. Euclidean point to surface distances between each dataset and the MOBY atlas were calculated. The obtained results indicate that after registration, the mean Euclidean distance decreased from 11.5±12.1 to 2.6±2.1 voxels. The proposed approach yielded satisfactory segmentation results with minimal user intervention. It proved to be robust for "incomplete" data (large chunks of skeleton missing) and for an intuitive exploration and comparison of multi-modal SPECT/CT cross-sectional mouse data.

CT-based handling and analysis of preclinical multimodality imaging data of bone metastases.

The pathogenesis of bone metastases is a complex and multifaceted process. Often multiple imaging modalities are needed to follow both the structural and functional changes over time during metastatic bone disease. Researchers face extended data sets of one experiment acquired with multiple modalities at multiple points in time. This review gives an overview of an integrated approach for handling these kinds of complex data. It focuses on the analysis of whole-body micro-computerized tomography and optical data handling. We show how researchers can generate side-by-side visualizations of scans taken with one imaging modality at multiple time points and with multiple modalities at one point. Moreover, we highlight methods for normalized volumes of interest selection and quantification of bone volume and thickness.

Automated bone volume and thickness measurements in small animal whole-body MicroCT data.

PURPOSE: Quantification of osteolysis is crucial for monitoring treatment effects in preclinical research and should be based on MicroCT data rather than conventional 2D radiographs to obtain optimal accuracy. However, data assessment is greatly complicated in the case of 3D data. This paper presents an automated method to follow osteolytic lesions quantitatively and visually over time in whole-body MicroCT data of mice. PROCEDURES: This novel approach is based on a previously published approach to coarsely locate user-defined structures of interest in the data and present them in a standardized manner (Baiker et al., Med Image Anal 14:723-737, 2010; Kok et al., IEEE Trand Vis Comput Graph 16:1396-1404, 2010). Here, we extend this framework by presenting a highly accurate way to automatically measure the volumes of individual bones and demonstrate the technique by following the effect of osteolysis in the tibia of a mouse over time. Besides presenting quantitative results, we also give a visualization of the measured volume to be able to investigate the performance of the method qualitatively. In addition, we describe an approach to measure and visualize cortical bone thickness, which allows assessing local effects of osteolysis and bone remodeling. The presented techniques are fully automated and therefore allow obtaining objective results, which are independent of human observer performance variations. In addition, the time typically required to analyze whole-body data is greatly reduced. RESULTS: Evaluation of the approaches was performed using MicroCT follow-up datasets of 15 mice (n = 15), with induced bone metastases in the right tibia. All animals were scanned three times: at baseline, after 3 and 7 weeks. For each dataset, our method was used to locate the tibia and measure the bone volume. To assess the performance of the automated method, bone volume measurements were also done by two human experts. A quantitative comparison of the results of the automated method with the human observers showed that there is a high correlation between the observers (r = 0.9996), between the first observer and the presented method (r = 0.9939), and also between the second observer and the presented method (r = 0.9937). In addition, Bland-Altman plots revealed excellent agreement between the observers and the automated method (interobserver bone volume variability, 0.59 ± 0.64%; Obs1 vs. Auto, 0.26 ± 2.53% and Obs2 vs. Auto, -0.33 ± 2.61%). Statistical analysis yielded no significant difference (p = .10) between the manual and the automated bone measurements and thus the method yields optimum results. This could also be confirmed visually, based on the graphical representations of the bone volumes. The performance of the bone thickness measurements was assessed qualitatively. CONCLUSIONS: We come to the conclusion that the presented method allows to measure and visualize local bone volume and thickness in longitudinal data in an accurate and robust manner, proving that the automated tool is a fast and user friendly alternative to manual analysis.

Automated registration of whole-body follow-up MicroCT data of mice.

In vivo MicroCT imaging of disease models at multiple time points is of great importance for preclinical oncological research, to monitor disease progression. However, the great postural variability between animals in the imaging device complicates data comparison. In this paper we propose a method for automated registration of whole-body MicroCT follow-up datasets of mice. First, we register the skeleton, the lungs and the skin of an articulated animal atlas (Segars et al. 2004) to MicroCT datasets, yielding point correspondence of these structures over all time points. This correspondence is then used to regularize an intensity-based B-spline registration. This two step approach combines the robustness of model-based registration with the high accuracy of intensity-based registration. We demonstrate our approach using challenging whole-body in vivo follow-up MicroCT data and obtain subvoxel accuracy for the skeleton and the skin, based on the Euclidean surface distance. The method is computationally efficient and enables high resolution whole-body registration in approximately 17 minutes with unoptimized code, mostly executed single-threaded.

Articulated whole-body atlases for small animal image analysis: construction and applications.

PURPOSE: Using three publicly available small-animal atlases (Sprague-Dawley rat, MOBY, and Digimouse), we built three articulated atlases and present several applications in the scope of molecular imaging. PROCEDURES: Major bones/bone groups were manually segmented for each atlas skeleton. Then, a kinematic model for each atlas was built: each joint position was identified and the corresponding degrees of freedom were specified. RESULTS: The articulated atlases enable automated registration into a common coordinate frame of multimodal small-animal imaging data. This eliminates the postural variability (e.g., of the head, back, and front limbs) that occurs in different time steps and due to modality differences and nonstandardized acquisition protocols. CONCLUSIONS: The articulated atlas proves to be a useful tool for multimodality image combination, follow-up studies, and image processing in the scope of molecular imaging. The proposed models were made publicly available.

Articulated planar reformation for change visualization in small animal imaging.

The analysis of multi-timepoint whole-body small animal CT data is greatly complicated by the varying posture of the subject at different timepoints. Due to these variations, correctly relating and comparing corresponding regions of interest is challenging.In addition, occlusion may prevent effective visualization of these regions of interest. To address these problems, we have developed a method that fully automatically maps the data to a standardized layout of sub-volumes, based on an articulated atlas registration. We have dubbed this process articulated planar reformation, or APR. A sub-volume can be interactively selected for closer inspection and can be compared with the corresponding sub-volume at the other timepoints, employing a number of different comparative visualization approaches. We provide an additional tool that highlights possibly interesting areas based on the change of bone density between timepoints. Furthermore we allow visualization of the local registration error, to give an indication of the accuracy of the registration. We have evaluated our approach on a case that exhibits cancer-induced bone resorption.

Atlas-based whole-body segmentation of mice from low-contrast Micro-CT data.

This paper presents a fully automated method for atlas-based whole-body segmentation in non-contrast-enhanced Micro-CT data of mice. The position and posture of mice in such studies may vary to a large extent, complicating data comparison in cross-sectional and follow-up studies. Moreover, Micro-CT typically yields only poor soft-tissue contrast for abdominal organs. To overcome these challenges, we propose a method that divides the problem into an atlas constrained registration based on high-contrast organs in Micro-CT (skeleton, lungs and skin), and a soft tissue approximation step for low-contrast organs. We first present a modification of the MOBY mouse atlas (Segars et al., 2004) by partitioning the skeleton into individual bones, by adding anatomically realistic joint types and by defining a hierarchical atlas tree description. The individual bones as well as the lungs of this adapted MOBY atlas are then registered one by one traversing the model tree hierarchy. To this end, we employ the Iterative Closest Point method and constrain the Degrees of Freedom of the local registration, dependent on the joint type and motion range. This atlas-based strategy renders the method highly robust to exceptionally large postural differences among scans and to moderate pathological bone deformations. The skin of the torso is registered by employing a novel method for matching distributions of geodesic distances locally, constrained by the registered skeleton. Because of the absence of image contrast between abdominal organs, they are interpolated from the atlas to the subject domain using Thin-Plate-Spline approximation, defined by correspondences on the already established registration of high-contrast structures (bones, lungs and skin). We extensively evaluate the proposed registration method, using 26 non-contrast-enhanced Micro-CT datasets of mice, and the skin registration and organ interpolation, using contrast-enhanced Micro-CT datasets of 15 mice. The posture and shape varied significantly among the animals and the data was acquired in vivo. After registration, the mean Euclidean distance was less than two voxel dimensions for the skeleton and the lungs respectively and less than one voxel dimension for the skin. Dice coefficients of volume overlap between manually segmented and interpolated skeleton and organs vary between 0.47+/-0.08 for the kidneys and 0.73+/-0.04 for the brain. These experiments demonstrate the method's effectiveness for overcoming exceptionally large variations in posture, yielding acceptable approximation accuracy even in the absence of soft-tissue contrast in in vivo Micro-CT data without requiring user initialization.

Endothelial primary cilia in areas of disturbed flow are at the base of atherosclerosis.

Atherosclerosis develops in the arterial system at sites of low as well as low and oscillating shear stress. Previously, we demonstrated a shear-related distribution of ciliated endothelial cells in the embryonic cardiovascular system and postulated that the primary cilium is a component of the shear stress sensor, functioning as a signal amplifier. This shear-related distribution is reminiscent of the atherosclerotic predilection sites. Thus, we determined whether a link exists between location and frequency of endothelial primary cilia and atherogenesis. We analyzed endothelial ciliation of the adult aortic arch and common carotid arteries of wild type C57BL/6 and apolipoprotein-E-deficient mice. Primary cilia are located at the atherosclerotic predilection sites, where flow is disturbed, in wild type mice and they occur on and around atherosclerotic lesions in apolipoprotein-E-deficient mice, which have significantly more primary cilia in the aortic arch than wild type mice. In addition, common carotid arteries were challenged for shear stress by application of a restrictive cast, resulting in the presence of primary cilia only at sites of induced low and disturbed shear. In conclusion, these data relate the presence of endothelial primary cilia to regions of atherogenesis, where they increase in number under hyperlipidemia-induced lesion formation. Experimentally induced flow disturbance leads to induction of primary cilia, and subsequently to atherogenesis, which suggests a role for primary cilia in endothelial activation and dysfunction.

Changes in shear stress-related gene expression after experimentally altered venous return in the chicken embryo.

Hemodynamics play an important role in cardiovascular development, and changes in blood flow can cause congenital heart malformations. The endothelium and endocardium are subjected to mechanical forces, of which fluid shear stress is correlated to blood flow velocity. The shear stress responsive genes lung Krüppel-like factor (KLF2), endothelin-1 (ET-1), and endothelial nitric oxide synthase (NOS-3) display specific expression patterns in vivo during chicken cardiovascular development. Nonoverlapping patterns of these genes were demonstrated in the endocardium at structural lumen constrictions that are subjected to high blood flow velocities. Previously, we described in chicken embryos a dynamic flow model (the venous clip) in which the venous return to the heart is altered and cardiac blood flow patterns are disturbed, causing the formation of congenital cardiac malformations. In the present study we test the hypothesis that disturbed blood flow can induce altered gene expression. In situ hybridizations indeed show a change in gene expression after venous clip. The level of expression of ET-1 in the heart is locally decreased, whereas KLF2 and NOS-3 are both upregulated. We conclude that venous obstruction results in altered expression patterns of KLF2, ET-1, and NOS-3, suggestive for increased cardiac shear stress.