Accuracy of TIP4P/2005 and SPC/Fw Water Models.

Water is used as the main solvent in model systems containing bioorganic molecules. Choosing the right water model is an important step in the study of the biophysical and biochemical processes that occur in cells. In the present work, we perform molecular dynamics simulations using two distinct force fields for water: the rigid model TIP4P/2005, where only intermolecular interactions are considered, and the flexible model SPC/Fw, where intramolecular interactions are also taken into account. The simulations aim to determine the effect of the inclusion of intramolecular interactions on the accuracy of calculated properties of bulk water (density and thermal expansion coefficient, self-diffusion coefficients, shear viscosity, radial distribution functions, and dielectric constant), as compared to experimental results, over a temperature range between 250 and 370 K. We find that the results of the rigid model present the smallest deviations relative to experiments for most of the calculated quantities, except for the shear viscosity of supercooled water and the water dielectric constant, where the flexible model presents better agreement with experiments.

Flow through Deformed Carbon Nanotubes Predicted by Rigid and Flexible Water Models.

In this study, using nonequilibrium molecular dynamics simulation, the flow of water in deformed carbon nanotubes is studied for two water models TIP4P/2005 and simple point charge/FH (SPC/FH). The results demonstrated a nonuniform dependence of the flow on the tube deformation and the flexibility imposed on the water molecules, leading to an unexpected increase in the flow in some cases. The effects of the tube diameter and pressure gradient are investigated to explain the abnormal flow behavior with different degrees of structural deformation.

Androcentrism in the scientific field: Brazilian systems of graduate studies, science and technology as a case study.

This article performs an analysis of female participation in science, in the Brazilian system of graduate studies and scientific research as a case study. This is relevant because science is a central supporting structure for modern societies and, therefore, a detailed analysis of the scientific power structure behind academic policy creation can reveal aspects of androcentrism in scientific activity. The main goal of this work is to identify the process of misogyny in science by describing its reproductive pattern. Our results show that women are around 50% of the undergraduate and graduate students when all fields are taken into consideration, but only 37% of the researchers in the CNPq system. We also observe a significant increase in female percentage within scientific activities at the initial and intermediary levels, except for the most prestigious areas as hard science. However, a scissor effect is identified between the initial level and the more prominent positions. This unbalanced participation reveals that female occupations in science are mostly as lower workforce since women are quite far from the social decision-making circles in this career.

Functionalized carbon nanocones performance in water harvesting.

In this work, we investigate the water capture process for functionalized carbon nanocones (CNCs) through molecular dynamic simulations in the following three scenarios: a single CNC in contact with a reservoir containing liquid water, a single CNC in contact with a water vapor reservoir, and a combination of more than one CNC in contact with vapor. We found that water flows through the nanocones when in contact with the liquid reservoir if the nanocone tip presents hydrophilic functionalization. In contact with steam, we observed the formation of droplets at the base of the nanocone only when hydrophilic functionalization is present. Then, water flows through in a linear manner, a process that is more efficient than that in the liquid reservoir regime. The scalability of the process is tested by analyzing the water flow through more than one nanocone. The results suggest that the distance between the nanocones is a fundamental ingredient for the efficiency of water harvesting.

Density anomaly in water-alcohol mixtures: Minimum model for structure makers and breakers.

We modeled the change in the temperature of maximum density (TMD) of a waterlike solvent when small amounts of solute are added to the mixture. The solvent is modeled as a two length scales potential, which is known to exhibit waterlike characteristic anomalies, while the solute is chosen to have an attractive interaction with the solvent which is tuned from small to large attractive potential. We show that if the solute exhibits high attraction with the solvent it behaves as a structure maker and the TMD increases with the addition of solute, while if the solute shows a low attraction with the solvent the TMD decreases, with the solute behaving as a structure breaker.

Atmospheric water harvesting using functionalized carbon nanocones.

In this work, we propose a method to harvest liquid water from water vapor using carbon nanocones. The condensation occurs due to the presence of hydrophilic sites at the nanocone entrance. The functionalization, together with the high mobility of water inside nanostructures, leads to a fast water flow through the nanostructure. We show using molecular dynamics simulations that this device is able to collect water if the surface functionalization is properly selected.

Structure and dynamics of nanoconfined water and aqueous solutions.

This review is devoted to discussing recent progress on the structure, thermodynamic, reactivity, and dynamics of water and aqueous systems confined within different types of nanopores, synthetic and biological. Currently, this is a branch of water science that has attracted enormous attention of researchers from different fields interested to extend the understanding of the anomalous properties of bulk water to the nanoscopic domain. From a fundamental perspective, the interactions of water and solutes with a confining surface dramatically modify the liquid's structure and, consequently, both its thermodynamical and dynamical behaviors, breaking the validity of the classical thermodynamic and phenomenological description of the transport properties of aqueous systems. Additionally, man-made nanopores and porous materials have emerged as promising solutions to challenging problems such as water purification, biosensing, nanofluidic logic and gating, and energy storage and conversion, while aquaporin, ion channels, and nuclear pore complex nanopores regulate many biological functions such as the conduction of water, the generation of action potentials, and the storage of genetic material. In this work, the more recent experimental and molecular simulations advances in this exciting and rapidly evolving field will be reported and critically discussed.

Open Access Publications with Article Processing Charge (APC) Payment: a Brazilian Scenario Analysis.

The expansion of open access publications has been correlated with specific government policies in many countries. The evolution in these cases is understandable within the framework of funding regulations. However, this is not the case for Brazil, where no regulation is currently in place. The unusually high percentage of open access publications in the Brazilian scientific community is analyzed here toward understanding which factors influence this growth and how similar effects may also impact other countries, particularly developing nations. We found that from 2012 to 2019 the Brazilian scientific community drifted to international open access journals. This transition is discussed in the framework of mega journals.

Misogyny in Brazilian Federal Government Agencies for Science and High-Education.

The transformation of women's role in society has been systematically studied. Numerous authors point out that among the factors of extreme relevance to this fact, the main is the increased presence of women in the formal job market. Researches also reveal that the increase in quantity is not reflected equally in all productive sectors nor the egalitarian occupation of high hierarchical positions. The present study aimed to analyze how the presence of women, especially in leadership positions, has evolved at the Brazilian Federal Agency for the Support and Evaluation of Postgraduate Education (CAPES) and the National Council for Scientific and Technological Development (CNPq) over the last 20 years. For these analyzes, surveys were conducted in the people management systems of the Brazilian Federal Public Administration. The initial hypothesis was that female attendance had increased in both the total number of female servants and in management and auxiliary positions, known as DAS in Brazil; however, evidence shows that women reduced overall agency presence, especially in the number of female Analysts occupying DAS positions. These results indicate that the misogyny observed in the academic sphere of the Brazilian National Postgraduate and Science, Technology, and Innovation systems are replicated in the politic-bureaucratic sphere that manages and sponsors these systems.

Water mobility in MoS2 nanopores: effects of the dipole-dipole interaction on the physics of fluid transport.

Use of nanoscale materials is a promising desalination technology. While fast water flow in nanotubes is well understood, this is not the case for water permeability in single-layer membranes. The advances in nanofluidics have opened up the possibility to shift the permeability-selectivity tradeoff. The physical-chemical balance between nanopore size, shape, and charge might be the answer. In this work, we investigate the role of the MoS2 nanopore charge distribution in water mobility by tuning its strength. We shed light on the competition between charge and nanopore size. The strong dipole interaction between water and the MoS2 nanopore is responsible for adding a constraint to the water angular orientation possibilities to travel through the nanopore, but this effect also depends on the nanopore size.

Molecular fluid flow in MoS2 nanoporous membranes and hydrodynamics interactions.

We study the impact of the induced pressure fields on the water flow and salt rejection in nanopores produced in MoS2 membranes. We observe that the water permeability and the salt rejection are not impacted by the distance between the pores. This result contradicts the continuous fluid mechanics calculations in microfilters, which indicates the existence of hydrodynamic interactions between adjacent pores that increase the water mobility. Our results suggest that at this nanoscale, the hydrodynamic interactions do not affect the water mobility through nanopores.

Water diffusion in carbon nanotubes: Interplay between confinement, surface deformation, and temperature.

In this article, we investigate, through molecular dynamics simulations, the diffusion behavior of the TIP4P/2005 water confined in pristine and deformed carbon nanotubes (armchair and zigzag). To analyze different diffusive mechanisms, the water temperature was varied as 210 ≤ T ≤ 380 K. The results of our simulations reveal that water presents a non-Arrhenius to Arrhenius diffusion crossover. The confinement shifts the diffusion transition to higher temperatures when compared with the bulk system. In addition, for narrower nanotubes, water diffuses in a single line, which leads to its mobility independent of the activation energy.

Correction: Salt parameterization can drastically affect the results from classical atomistic simulations of water desalination by MoS2 nanopores.

Correction for 'Salt parameterization can drastically affect the results from classical atomistic simulations of water desalination by MoS2 nanopores' by João P. K. Abal et al., Phys. Chem. Chem. Phys., 2020, 22, 11053-11061, DOI: 10.1039/d0cp00484g.

Salt parameterization can drastically affect the results from classical atomistic simulations of water desalination by MoS2 nanopores.

Water scarcity is a reality in our world, and scenarios predicted by leading scientists in this area indicate that it will worsen in the next decades. However, new technologies based on low-cost seawater desalination can prevent the worst scenarios, providing fresh water for humanity. With this goal, membranes based on nanoporous materials have been suggested in recent years. One of the materials suggested is MoS2, and classical Molecular Dynamics (MD) simulation is one of the most powerful tools to explore these nanomaterials. However, distinct force fields employed in MD simulations are parameterized based on distinct experimental quantities. In this paper, we compare two models of salt that were built based on distinct properties of water-salt mixtures. One model fits the hydration free energy and lattice properties, and the second fits the crystal density and the density and the dielectric constant of water and salt mixtures. To compare the models, MD simulations for salty water flow through nanopores of two sizes were used - one pore big enough to accommodate hydrated ions, and one smaller in which the ion has to dehydrate to enter - and two rigid water models from the TIP4P family - TIP4P/2005 and TIP4P/ε. Our results indicate that the water permeability and salt rejection by the membrane are more influenced by the salt model than by the water model, especially for the narrow pore. In fact, completely distinct mechanisms were observed, and they are related to the characteristics employed in the ion model parameterization. The results show that not only can the water model influence the outcomes, but the ion model plays a crucial role when the pore is small enough.

Water diffusion in rough carbon nanotubes.

We use molecular dynamics simulations to study the diffusion of water inside deformed carbon nanotubes with different degrees of deformation at 300 K. We found that the number of hydrogen bonds that water forms depends on nanotube topology, leading to enhancement or suppression of water diffusion. The simulation results reveal that more realistic nanotubes should be considered to understand the confined water diffusion behavior, at least for the narrowest nanotubes, when the interaction between water molecules and carbon atoms is relevant.

Density functional theory study of π-aromatic interaction of benzene, phenol, catechol, dopamine isolated dimers and adsorbed on graphene surface.

We analyze the influence of different groups on the intermolecular energy of aromatic homodimers and on the interaction between a single aromatic molecule and a graphene surface. The analysis is performed for benzene, phenol, catechol, and dopamine. For calculating the energies, we employ density functional theory within the local density approximation (LDA-DFT). Our results show that the lowest intermolecular energies between the aromatic molecules are related to the T-shaped configurations. This lower energy results from the quadrupole interaction. In the case of the interaction between the graphene sheet and the aromatic molecules, the lowest energy configuration is the face to face. The adsorption energy of a molecule on a graphene surface involves π - π interactions that explain the face to face arrangement. These results provide insight into the manner by which substituents can be utilized in crystal engineering, supramolecular chemistry, bioinspired materials, formation of various molecular clusters, parameterization of force fields suitable for classical simulations, and design of novel sensing, drug delivery, and filters based on graphene.

Geographic and Gender Diversity in the Brazilian Academy of Sciences.

Recent studies have shown that diversity in race and gender is important to improve competitiveness, creativity and innovation. However, many studies have shown that the universe of science is not diverse in none of these criteria. In this work, we quantify the gender and geographic diversity in the Brazilian science. We study in detail the profile of the titular members of the most prestigious academic institution of Brazil, the Brazilian Academy of Sciences (ABC). Our analysis shows that the members of the ABC concentrates 80% in the Southeast region and that the overwhelming majority is composed by men. We show that female and male researchers have roughly the same amount of publication per year but women produce more human resources. Using the Brazilian Researchers' Fellowship databank we show that the gender and diversity both in gender and in geography decreases along the researchers' career.

2D nanoporous membrane for cation removal from water: Effects of ionic valence, membrane hydrophobicity, and pore size.

Using molecular dynamic simulations, we show that single-layers of molybdenum disulfide (MoS2) and graphene can effectively reject ions and allow high water permeability. Solutions of water and three cations with different valencies (Na+, Zn2+, and Fe3+) were investigated in the presence of the two types of membranes, and the results indicate a high dependence of the ion rejection on the cation charge. The associative characteristic of ferric chloride leads to a high rate of ion rejection by both nanopores, while the monovalent sodium chloride induces lower rejection rates. Particularly, MoS2 shows 100% of Fe3+ rejection for all pore sizes and applied pressures. On the other hand, the water permeation does not vary with the cation valence, having dependence only with the nanopore geometric and chemical characteristics. This study helps us to understand the fluid transport through a nanoporous membrane, essential for the development of new technologies for the removal of pollutants from water.

Relation between boundary slip mechanisms and waterlike fluid behavior.

The slip of a fluid layer in contact with a solid confining surface is investigated for different temperatures and densities using molecular dynamic simulations. We show that for an anomalous waterlike fluid the slip goes as follows: for low levels of shear, defect slip appears and is related to the particle exchange between the fluid layers; at high levels of shear, global slip occurs and is related to the homogeneous distribution of the fluid in the confining surfaces. The oscillations in the transition velocity from defect to global slip are shown to be associated with changes in the layering distribution in the anomalous fluid.

Waterlike anomalies in a two-dimensional core-softened potential.

We investigate the structural, thermodynamic, and dynamic behavior of a two-dimensional (2D) core-corona system using Langevin dynamics simulations. The particles are modeled by employing a core-softened potential which exhibits waterlike anomalies in three dimensions. In previous studies in a quasi-2D system a new region in the pressure versus temperature phase diagram of structural anomalies was observed. Here we show that for the two-dimensional case two regions in the pressure versus temperature phase diagram with structural, density, and diffusion anomalies are observed. Our findings indicate that, while the anomalous region at lower densities is due the competition between the two length scales in the potential at higher densities, the anomalous region is related to the reentrance of the melting line.