Detecting genomic damages in the frog Dendropsophus minutus: preserved versus perturbed areas.

The aim of the study was to use the comet assay (single-cell gel electrophoresis) and micronucleus test to assess the extent of genomic damage in the whole blood of Dendropsophus minutus from agroecosystems with great use of agrochemicals and to compare the results to those obtained from animals living in unpolluted areas. Our results indicated that specimens of D. minutus collected in perturbed areas exhibited higher amounts of DNA damage in blood cells in comparison to animals from areas free of agricultural activities. The average and standard deviation of all comet assay parameters (tail length, percentage of DNA in the tail, and olive tail moment) and micronuclei frequency were significantly higher in specimens collected in perturbed areas than in the animals from preserved areas. Our study showed that animals from perturbed areas, such as agroecosystems, tend to have higher amounts of DNA damage than animals from reference areas. Moreover, we can conclude that D. minutus tadpoles could be included as a model organism in biomonitoring studies.

Fourteen years after the Shahid-Rajaei dam construction: an evaluation of morphometric and genetic differentiation between isolated up- and downstream populations of Capoeta capoeta gracilis (Pisces: Cyprinidae) in the Tajan River of Iran.

We evaluated the effects of the Shahid-Rajaei dam, 14 years after its construction, on morphometric and genetic divergence between up- and downstream populations of the Iranian fish Siah-Mahi (Capoeta capoeta gracilis). Sixty-six specimens were analyzed. There were significant differences between the 2 groups in the means of 16 morphometric characters (univariate analysis). In discriminant function analysis, the proportion of individuals classified into their original groups was 97 and 100% for up- and downstream populations, respectively. Principal component analysis of morphometric data demonstrated that the up- and downstream samples of Siah-Mahi are clearly distinct. In the genetic analysis, 6 informative primers produced 89 polymorphic bands with 95% polymorphism. In association analysis between morphological and genetic data, 63 of 89 genetic markers were significantly correlated with the 16 morphometric characters. We conclude that these are 2 morphologically and genetically distinct populations of C. c. gracilis, probably due to limited downstream dispersal and elimination of upstream migration.

A multicenter validation of an endoscopic classification with narrow band imaging for gastric precancerous and cancerous lesions.

BACKGROUND AND STUDY AIM: The reliability and external validity of narrow band imaging (NBI) in the stomach have not been described consistently. The aim of the current study was to describe and estimate the accuracy and reliability of a simplified classification system for NBI in the diagnosis of gastric lesions. METHODS: Consecutive patients undergoing NBI endoscopy at two reference centers (n=85, 33% with dysplasia) were included in two studies. In total, 224 different areas were biopsied and recorded onto video. In the derivation study, previously described NBI features were analyzed in order to develop a simplified classification. In the validation study the accuracy and reliability of this classification were estimated among three groups of endoscopists with different levels of expertise in NBI. RESULTS: The reliability/accuracy results from the derivation study allowed the creation of a simplified NBI classification. In the validation study, "regular vessels with circular mucosa" (pattern A) was associated with normal histology (accuracy 83%; 95% confidence interval [CI] 75 %-90%); "tubulo-villous mucosa" (pattern B) was associated with intestinal metaplasia (accuracy 84%; 95CI 77%-91%; positive likelihood ratio [LR+]=4.75); and "irregular vessels and mucosa" (pattern C) was associated with dysplasia (accuracy 95%; 95CI 90%-99%; LR+=44.33). The reproducibility of these patterns was high (k=0.62). "Light-blue crest" was moderately reliable (k=0.49) but specific (87%) for intestinal metaplasia. A variable vascular density (additional pattern+) was the best feature for Helicobacter pylori gastritis (accuracy 70%; 95CI 59%-80%) but showed only fair reliability (k=0.38). Non-experienced endoscopists presented lower agreement (k=0.6 vs. k=0.75) and accuracy (74% vs. 86%) than international experts/experienced endoscopists. CONCLUSION: A simplified NBI classification is accurate and reliable for the diagnosis of intestinal metaplasia and dysplasia. The classification should be further assessed and validated on a per-patient assessment of NBI, and by comparing NBI with other imaging technologies.

Priority areas for anuran conservation using biogeographical data: a comparison of greedy, rarity, and simulated annealing algorithms to define reserve networks in cerrado.

Spatial patterns in biodiversity variation at a regional scale are rarely taken into account when a natural reserve is to be established, despite many available methods for determining them. In this paper, we used dimensions of occurrence of 105 species of Anura (Amphibia) in the cerrado region of central Brazil to create a regional system of potential areas that preserves all regional diversity, using three different algorithms to establish reserve networks: "greedy", rarity, and simulated annealing algorithms. These generated networks based on complementarity with 10, 12, and 8 regions, respectively, widely distributed in the biome, and encompassing various Brazilian states. Although the purpose of these algorithms is to find a small number of regions for which all species are represented at least once, the results showed that 67.6%, 76.2%, and 69.5% of the species were represented in two or more regions in the three networks. Simulated annealing produced the smallest network, but it left out three species (one endemic). On the other hand, while the greedy algorithm produce a smaller solution, the rarity-based algorithm ensured that more species were represented more than once, which can be advantageous because it takes into consideration the high levels of habitat loss in the cerrado. Although usually coarse, these macro-scale approaches can provide overall guidelines for conservation and are useful in determining the focus for more local and effective conservation efforts, which is especially important when dealing with a taxonomic group such as anurans, for which quick and drastic population declines have been reported throughout the world.

Priority areas for anuran conservation using biogeographical data: a comparison of greedy, rarity, and simulated annealing algorithms to define reserve networks in Cerrado

Os padrões espaciais da variação da biodiversidade em escalas regionais raramente são considerados na escolha de uma reserva (unidades de conservação), a despeito dos diversos métodos disponíveis para esse fim. Neste trabalho, usamos dados da extensão de ocorrência de 105 espécies de Anura (Amphibia) na região de Cerrado, no Brasil Central, para estabelecer um sistema regional de áreas potenciais que preserve toda a diversidade da região. Para tanto, três algoritmos de seleção de redes de reservas foram testados: "greedy", raridade e "annealing" simulado. Com base na complementação, esses algoritmos geraram redes com 10, 12 e 8 regiões, respectivamente, sendo estas amplamente distribuídas no bioma e contemplando diferentes Estados da União. Esses algoritmos buscam o menor número de regiões que representem todas as espécies pelo menos uma vez. No entanto, 67,6%, 76,2% e 69,5% das espécies foram representadas ("preservadas") em duas ou mais regiões nas três redes de reservas selecionadas pelos métodos citados. O algoritmo "annealing" simulado resultou na menor rede, no entanto, não incluiu áreas para a preservação de três espécies (sendo uma delas endêmica). Por outro lado, embora o algoritmo de "greedy" tenha resultado em menor solução, o método baseado na raridade garante que mais espécies sejam representadas mais de uma vez, o que pode ser vantajoso considerando a elevada taxa de perda de habitat no Cerrado. Embora imprecisas, as abordagens em grandes escalas espaciais podem indicar estratégias gerais para a conservação e definir esforços de conservação locais e mais efetivos. Isto é especialmente importante quando se trata de um grupo taxonômico como os anuros, com declínios populacionais acentuados registrados mundialmente.

Anurans from a local assemblage in central Brazil: linking local processes with macroecological patterns.

Macroecological variables of Anuran species found in a local assemblage from Central Brazil (Silvânia, Goiás State) were linked to population dyamics statistics of these species. Geographical range size (GRS), body size, and species' midpoints were the macroecological variables investigated for those species found in the local assemblage and for all other species (105 in the total) found in the Cerrado biome. For each species found in the local assemblage, data on abundance was obtained. Using this data, local population variability as expressed by the coefficient of variation was estimated. Distribution of means, medians, maximum, variances, and skewness (g1), for both GRS and body size, estimated in the local assemblage were compared, using null models, with the data extracted from the overall Cerrado species pool. The results indicated a clear macroecological relationship between GRS and body size and a decrease in local abundance when distance between the locality analyzed and species midpoint increased. According to null models, both body size and GRS values measured in the local assemblage can be considered a random sample from the regional species pool (Cerrado region). Finally, a three-dimensional analysis using body size, GRS, and local population estimates (abundance and variability), indicated that less abundant and more fluctuating species fell near the lower boundary of the polygonal relationship between GRS and body size. Thus, macroecological results linked with local data on population dynamics supported the minimum viable population model.

Anurans from a local assemblage in Central Brazil: linking local processes with macroecological patterns

Variáveis macroecológicas de uma assembléia local de espécies de anfíbios anuros do Brasil Central (Silvânia, Estado de Goiás) foram relacionadas com estatísticas de dinâmica de população dessas espécies. A extensão de ocorrência (GRS), o tamanho de corpo e o centro de distribuição das espécies foram as variáveis macroecológicas investigadas para as espécies da assembléia local e para todas as outras espécies (105 no total) encontradas no bioma de Cerrado. Também foram obtidos dados de abundância para 15 espécies da assembléia local. Usando esses dados, a variabilidade populacional foi estimada pelo coeficiente de variação. A distribuição de médias, medianas, máximos, assimetrias e curtoses, para GRS e tamanho de corpo, da assembléia local foi comparada, por intermédio de modelos nulos, com os dados do conjunto de espécies do Cerrado. Os resultados indicaram clara relação macroecológica entre a GRS e o tamanho do corpo, bem como diminuição da abundância local com o aumento da distância entre os centros de distribuição das espécies e a localidade analisada. De acordo com os modelos nulos, os valores do tamanho de corpo e da GRS das espécies da assembléia local podem ser considerados uma amostra aleatória proveniente da composição regional de todo o Cerrado. Finalmente, uma análise tridimensional considerando o tamanho do corpo, a GRS, a abundância local e a variabilidade populacional indicou que espécies menos abundantes, com maior variabilidade populacional, estão próximas ao limite inferior da relação poligonal entre GRS e tamanho de corpo. Assim, os resultados macroecológicos, quando relacionados a dados obtidos em pequenas escalas espaciais, corroboraram o modelo de população mínima viável.

Spatial patterns and the macroecology of South American viperid snakes.

The macroecological relationship between geographic range size and body size has been described recently as an envelope region defined in bivariate space and limited by ecological and physical constraints. These constraints can be explained by selective processes acting at different levels and theories for an optimal body size. However, since data are obtained for different species in a large taxonomic group, at continental scales, it is possible that these variables may be strongly affected by spatial and phylogenetic autocorrelations. In this paper, we analyzed data on geographic range size (GRS) and body size (BS) for 36 species of Viperid snakes from South America, searching for spatial trends that could affect the shape of the macroecological constraint space. Data were analyzed using spatial autocorrelation and trend surface analyses, detecting a significant spatial pattern for GRS, fitted by a quadratic trend (R2 = 0.665; P < 0.001). After removing this effect, the relationship between trend residuals for GRS and BS still forms a constraint space, in such a way that results for South American Viperid snakes support both the shape of constraint space previously observed in other taxonomic groups and the ecological and evolutionary processes developed to explain it.