Characterization of Impurities in Therapeutic RNAs at the Single Nucleotide Level.

The chemistry of guide RNA (gRNA) affects the performance of the clustered regularly interspaced short palindromic repeats (CRISPR)-Cas9 genome editing technique. However, the literature is very scarce about the study of gRNA degradation and in particular at the single nucleotide level. In this work, we developed a workflow to characterize the impurities of large RNAs at the single nucleotide level and identified the residues prone to degradation. Our strategy involves (i) the reduction of RNA length, (ii) a chromatographic mode able to capture subtle changes in impurity polarity, and (iii) a streamlined data treatment. To illustrate the approach, stressed gRNA samples were analyzed by coupling an immobilized ribonuclease T1 cartridge to a hydrophilic interaction liquid chromatography (HILIC) column hyphenated with tandem mass spectrometry (MS/MS). Critical findings were made possible by the presented technology. In particular, the desulfurization of phosphorothioate (PS) linkages was the major degradation observed at the single nucleotide level while no change in purity profile could be observed when using conventional ion-pairing reversed-phase (IPRP) liquid chromatography. To our knowledge, this is the first time that several impurity types are screened for a large RNA molecule using an automated online digestion analysis approach.

Synthesis and application of molecularly imprinted silica for the selective extraction of some polar organophosphorus pesticides from almond oil.

The aim of this work was to prepare and evaluate molecularly imprinted polymers obtained by a sol-gel approach for the selective solid-phase extraction (SPE) of organophosphorus pesticides (OPs) from almond oil. The performances of molecularly imprinted silicas (MISs), prepared using different conditions of synthesis, were studied by applying different extraction procedures in order to determine the ability of the MISs to selectively extract ten target OPs. For this, the retention of OPs on MISs in pure media was compared with the retention on a non-imprinted silicas (NISs), used as control sorbent, to prove the presence of specific cavities. The most promising MIS allowed the selective extraction of the 3 most polar OPs among the 10 studied. The capacity was studied and the repeatability of the extraction recovery yield was demonstrated both in pure and real media. This MIS was able to selectively extract fenthion sulfoxide and dimethoate contained in almond oil extract after applying the optimized extraction procedure with recovery yields between 100 and 114%. The estimated limit of quantification (LOQ, S/N = 10), thanks to LC/MS analysis in MRM mode, between 1.2 and 4.6 µg/kg for those OPs in the almond fruits, was more than 10 times lower than the Maximum Residue Levels (MRLs) established by the European Commission. This MIS therefore shows a high potential for the analysis of those two polar OPs at trace levels from almond oils.

Synthesis and application of molecularly imprinted polymers for the selective extraction of organophosphorus pesticides from vegetable oils.

The increasing use of pesticides in agriculture causes environmental issues and possible serious health risks to humans and animals. Their determination at trace concentrations in vegetable oils constitutes a significant analytical challenge. Therefore, their analysis often requires both an extraction and a purification step prior to separation with liquid chromatography (LC) and mass spectrometry (MS) detection. This work aimed at developing sorbents that are able to selectively extract from vegetable oil samples several organophosphorus (OPs) pesticides presenting a wide range of physico-chemical properties. Therefore, different conditions were screened to prepare molecularly imprinted polymers (MIPs) by a non-covalent approach. The selectivity of the resulting polymers was evaluated by studying the OPs retention in pure media on both MIPs and non-imprinted polymers (NIP) used as control. The most promising MIP sorbent was obtained using monocrotophos (MCP) as the template, methacrylic acid (MAA) as the monomer and ethylene glycol dimethacrylate (EGDMA) as the cross-linker with a molar ratio of 1/4/20 respectively. The repeatability of the extraction procedure and of the synthesis procedure was demonstrated in pure media. The capacity of this MIP was 1mg/g for malathion. This MIP was also able to selectively extract three OPs from almond oil by applying the optimized SPE procedure. Recoveries were between 73 and 99% with SD values between 4 and 6% in this oil sample. The calculated LOQs (between 0.3 and 2µg/kg) in almond seeds with a SD between 0.1 and 0.4µg/kg were lower than the Maximum Residue Levels (MRLs) established for the corresponding compounds in almond seed.