Short-term variation of plankton spatial distribution at a subtropical mixed estuarine system.

The horizontal distribution of plankton communities in a subtropical mixed estuarine system over one tidal cycle was investigated. Hydrological and planktonic samples were obtained twice on 17 July 2007 in a transect with ten stations in the Babitonga Bay estuary, south Brazil (~26°S). Hydrological variables did not vary spatially or tidally during samplings. However, in the cluster analyses both phyto and zooplankton were structured according to their estuarine position and in the inner stations also by the tidal condition. Phytoplankton abundances were higher during flood tide in the inner estuary (max. 122,583 ind.L-1), where diatoms dominated, particularly Diploneis bombus. However, the density at ebb tide increased towards outer estuary (max. >100,000 ind.L-1) and flagellates, mostly Gymnodinium spp., became abundant. Zooplankton abundances were higher at intermediate stations during both tides (max. 13,691 ind.m-3). The innermost stations were dominated by the copepod Acartia tonsa, while in the outermost stations Temora turbinata and the polychaete larvae Loimia sp. dominated. The results demonstrate how variable the estuarine plankton horizontal structure can be over short time-scales even in mixed estuarine systems under relatively homogeneous conditions, highlighting the importance to consider such temporal scales for a more accurate understanding of the dynamics of these communities.

Microbial Diversity of Deep-Sea Ferromanganese Crust Field in the Rio Grande Rise, Southwestern Atlantic Ocean.

Seamounts are often covered with Fe and Mn oxides, known as ferromanganese (Fe-Mn) crusts. Future mining of these crusts is predicted to have significant effects on biodiversity in mined areas. Although microorganisms have been reported on Fe-Mn crusts, little is known about the role of crusts in shaping microbial communities. Here, we investigated microbial communities based on 16S rRNA gene sequences retrieved from Fe-Mn crusts, coral skeleton, calcarenite, and biofilm at crusts of the Rio Grande Rise (RGR). RGR is a prominent topographic feature in the deep southwestern Atlantic Ocean with Fe-Mn crusts. Our results revealed that crust field of the RGR harbors a usual deep-sea microbiome. No differences were observed on microbial community diversity among Fe-Mn substrates. Bacterial and archaeal groups related to oxidation of nitrogen compounds, such as Nitrospirae, Nitrospinae phyla, Candidatus Nitrosopumilus within Thaumarchaeota group, were present on those substrates. Additionally, we detected abundant assemblages belonging to methane oxidation, i.e., Methylomirabilales (NC10) and SAR324 (Deltaproteobacteria). The chemolithoautotrophs associated with ammonia-oxidizing archaea and nitrite-oxidizing bacteria potentially play an important role as primary producers in the Fe-Mn substrates from RGR. These results provide the first insights into the microbial diversity and potential ecological processes in Fe-Mn substrates from the Atlantic Ocean. This may also support draft regulations for deep-sea mining in the region.

Coccolith volume of the Southern Ocean coccolithophore Emiliania huxleyi as a possible indicator for palaeo-cell volume.

Coccolithophores are a key functional phytoplankton group and produce minute calcite plates (coccoliths) in the sunlit layer of the pelagic ocean. Coccoliths significantly contribute to the sediment record since the Triassic and their geometry have been subject to palaeoceanographic and biological studies to retrieve information on past environmental conditions. Here, we present a comprehensive analysis of coccolith, coccosphere and cell volume data of the Southern Ocean Emiliania huxleyi ecotype A, subject to gradients of temperature, irradiance, carbonate chemistry and macronutrient limitation. All tested environmental drivers significantly affect coccosphere, coccolith and cell volume with driver-specific sensitivities. However, a highly significant correlation emerged between cell and coccolith volume with Vcoccolith  = 0.012 ± 0.001 * Vcell  + 0.234 ± 0.066 (n = 23, r2  = .85, p < .0001, σest  = 0.127), indicating a primary control of coccolith volume by physiological modulated changes in cell volume. We discuss the possible application of fossil coccolith volume as an indicator for cell volume/size and growth rate and, additionally, illustrate that macronutrient limitation of phosphorus and nitrogen has the predominant influence on coccolith volume in respect to other environmental drivers. Our results provide a solid basis for the application of coccolith volume and geometry as a palaeo-proxy and shed light on the underlying physiological reasons, offering a valuable tool to investigate the fossil record of the coccolithophore E. huxleyi.

Small eukaryotic phytoplankton communities in tropical waters off Brazil are dominated by symbioses between Haptophyta and nitrogen-fixing cyanobacteria.

Symbioses between eukaryotic algae and nitrogen-fixing cyanobacteria have been recognized in recent years as a key source of new nitrogen in the oceans. We investigated the composition of the small photosynthetic eukaryote communities associated with nitrogen-fixing cyanobacteria in the Brazilian South Atlantic Bight using a combination of flow cytometry sorting and high throughput sequencing of two genes: the V4 region of 18S rRNA and nifH. Two distinct eukaryotic communities were often encountered, one dominated by the Mamiellophyceae Bathycoccus and Ostreococcus, and one dominated by a prymnesiophyte known to live in symbiosis with the UCYN-A1 nitrogen-fixing cyanobacterium. Among nifH sequences, those from UCYN-A1 were most abundant but three other UCYN-A clades (A2, A3, A4) were also found. Network analysis confirmed the relation between A1 and A2 clades and their hypothesized hosts and pointed out to the potential association between novel clade A4 with Braarudosphaera bigelowii, previously hypothesized to host A2.

Pico and nanoplankton abundance and carbon stocks along the Brazilian Bight.

Pico and nanoplankton communities from the Southwest Atlantic Ocean along the Brazilian Bight are poorly described. The hydrography in this region is dominated by a complex system of layered water masses, which includes the warm and oligotrophic Tropical Water (TW), the cold and nutrient rich South Atlantic Central Water (SACW) and the Coastal Water (CW), which have highly variable properties. In order to assess how pico- and nanoplankton communities are distributed in these different water masses, we determined by flow cytometry the abundance of heterotrophic bacteria, Prochlorococcus, Synechococcus and autotrophic pico and nanoeukaryotes along three transects, extending from 23°S to 31°S and 39°W to 49°W. Heterotrophic bacteria (including archaea, maximum of 1.5 × 106 cells mL-1) were most abundant in Coastal and Tropical Water whereas Prochlorococcus was most abundant in open-ocean oligotrophic waters (maximum of 300 × 103 cells mL-1). Synechococcus(up to 81 × 103 cells mL-1), as well as autotrophic pico and nanoeukaryotes seemed to benefit from the influx of nutrient-rich waters near the continental slope. Autotrophic pico and nanoeukaryotes were also abundant in deep chlorophyll maximum (DCM) layers from offshore waters, and their highest abundances were 20 × 103 cells mL-1 and 5 × 103 cells mL-1, respectively. These data are consistent with previous observations in other marine areas where Synechococcus and autotrophic eukaryotes dominate mesotrophic waters, whereas Prochlorococcus dominate in more oligotrophic areas. Regardless of the microbial community structure near the surface, the carbon stock dominance by autotrophic picoeukaryotes near the DCM is possibly linked to vertical mixing of oligotrophic surface waters with the nutrient-rich SACW and their tolerance to lower light levels.

Aliterella atlantica gen. nov., sp. nov., and Aliterella antarctica sp. nov., novel members of coccoid Cyanobacteria.

Two Cyanobacteria isolated from South Atlantic Ocean continental shelf deep water and from a marine green algae inhabiting the Admiralty Bay, King George Island, Antarctica were investigated based on morphological and ultrastructural traits, phylogeny of 16S rRNA gene sequences, secondary structure of the 16S-23S internal transcribed spacer regions and phylogenomic analyses. The majority of these evaluations demonstrated that both strains differ from the genera of cyanobacteria with validly published names and, therefore, supported the description of the novel genus as Aliterella gen. nov. The identity and phylogeny of 16S rRNA gene sequences, together with the secondary structure of D1D1' and BoxB intergenic regions, further supported the two strains representing distinct species: Aliterella atlantica gen. nov., sp. nov. (type SP469036, strain CENA595T) and Aliterella antarctica sp. nov. (type SP469035, strain CENA408T). The phylogenomic analysis of A. atlantica sp. nov. CENA595T, based on 21 protein sequences, revealed that this genus belongs to the cyanobacterial order Chroococcidiopsidales. The isolation and cultivation of two geographically distant unicellular members of a novel cyanobacterial genus and the sequenced genome of the type strain bring new insights into the current classification of the coccoid group, and into the reconstruction of their evolutionary history.

Diel Vertical Dynamics of Gelatinous Zooplankton (Cnidaria, Ctenophora and Thaliacea) in a Subtropical Stratified Ecosystem (South Brazilian Bight).

The diel vertical dynamics of gelatinous zooplankton in physically stratified conditions over the 100-m isobath (~110 km offshore) in the South Brazilian Bight (26°45'S; 47°33'W) and the relationship to hydrography and food availability were analyzed by sampling every six hours over two consecutive days. Zooplankton samples were taken in three depth strata, following the vertical structure of the water column, with cold waters between 17 and 13.1°C, influenced by the South Atlantic Central Water (SACW) in the lower layer (>70 m); warm (>20°C) Tropical Water in the upper 40 m; and an intermediate thermocline with a deep chlorophyll-a maximum layer (0.3-0.6 mg m-3). Two distinct general patterns were observed, emphasizing the role of (i) physical and (ii) biological processes: (i) a strong influence of the vertical stratification, with most zooplankton absent or little abundant in the lower layer. The influence of the cold SACW on the bottom layer apparently restricted the vertical occupation of most species, which typically inhabit epipelagic warm waters. Even among migratory species, only a few (Aglaura hemistoma, Abylopsis tetragona eudoxids, Beroe sp., Thalia democratica, Salpa fusiformis) crossed the thermocline and reached the bottom layer. (ii) A general tendency of partial migrations, with variable intensity depending on the different species and developmental stages; populations tended to be more widely distributed through the water column during daylight, and to become more aggregated in the upper layer during the night, which can be explained based on the idea of the "hunger-satiation hypothesis", maximizing feeding and minimizing the chances of being predated.

Draft genome sequence of a novel culturable marine chroococcalean cyanobacterium from the South atlantic ocean.

The novel chroococcalean cyanobacterium strain CENA595 was isolated from the deep chlorophyll maximum layer of the continental shelf of the South Atlantic Ocean. Here, we report the draft genome sequence for this strain, consisting of 60 contigs containing a total of 5,265,703 bp and 3,276 putative protein-coding genes.

Offshore distribution patterns of the cyanobacterium Trichodesmium erythraeum ehrenberg and associated phyto- and bacterioplankton in the southern Atlantic coast ( Paraná, Brazil )

O propósito principal da presente pesquisa foi investigar as florações de Trichodesmium erythraeum na plataforma continental interna do Estado do Paraná, Brasil. Foram medidas, em águas de superfície a temperatura, salinidade, bactérias totais, biomassa bacteriana, clorofila-a, densidade fitoplanctônica, densidade das cianobactérias Anabaena sp., Merismopedia sp. e T. erythraeum. Ao contrário dos dinoflagelados, cuja abundância foi relativamente constante em todas as estações, as diatomáceas cêntricas e penadas, Anabaena sp. e Merismopedia sp. foram mais abundantes até a isóbata dos 15 m. A densidade de bactérias totais também foi relativamente homogênea na área amostrada, o que sugere que as florações de T. erythraeum não se encontravam em fase senescente. Os resultados confirmam que T. erythraeum é capaz de sobreviver em condições ambientais relativamente inóspitas devido à sua capacidade de fixar nitrogênio e efetuar a fotossíntese em altas intensidades de luz.

Avaliaçäo de um bioensaio de multiespécie utilizando o fitoplâncton marinho natural / Evaluation of a multi-species bioassay using natural marine phytoplankton

Rapidamente tem crescido o interesse dos efeitos adversos das atividades antropogênicas sobre os ecossistemas naturais. Poluiçäo química é uma das mais pronunciadas consequências da industrializaçäo. O potencial dos impactos destas substâncias estressoras sobre os ecossistemas aquáticos e seus organismos podem ser avaliados, em parte, por testes ecotoxicológicos de diferentes complexidades. A questäo é: qual a complexidade dos sistemas testes que possa demonstrar de forma mais realística os efeitos das taxas de risco em comunidades naturais? Este trabalho teve por objetivo principal testar o desenho experimental de um bioensaio de multiespécies, utilizando a comunidade do fitoplâncton marinho natural. Observou-se taxas de crescimento algal e composiçäo específica a partir da induçäo de stress pelo agente químico Dicofol (1,1-bis-(clorofenil)-2,2,2-tricloroetano)