Non-mercury methylating microbial taxa are integral to understanding links between mercury methylation and elemental cycles in marine and freshwater sediments.

The goal of this study was to explore the role of non-mercury (Hg) methylating taxa in mercury methylation and to identify potential links between elemental cycles and Hg methylation. Statistical approaches were utilized to investigate the microbial community and biochemical functions in relation to methylmercury (MeHg) concentrations in marine and freshwater sediments. Sediments were collected from the methylation zone (top 15 cm) in four Hg-contaminated sites. Both abiotic (e.g., sulfate, sulfide, iron, salinity, total organic matter, etc.) and biotic factors (e.g., hgcA, abundances of methylating and non-methylating taxa) were quantified. Random forest and stepwise regression were performed to assess whether non-methylating taxa were significantly associated with MeHg concentration. Co-occurrence and functional network analyses were constructed to explore associations between taxa by examining microbial community structure, composition, and biochemical functions across sites. Regression analysis showed that approximately 80% of the variability in sediment MeHg concentration was predicted by total mercury concentration, the abundances of Hg methylating taxa, and the abundances of the non-Hg methylating taxa. The co-occurrence networks identified Paludibacteraceae and Syntrophorhabdaceae as keystone non Hg methylating taxa in multiple sites, indicating the potential for syntrophic interactions with Hg methylators. Strong associations were also observed between methanogens and sulfate-reducing bacteria, which were likely symbiotic associations. The functional network results suggested that non-Hg methylating taxa play important roles in sulfur respiration, nitrogen respiration, and the carbon metabolism-related functions methylotrophy, methanotrophy, and chemoheterotrophy. Interestingly, keystone functions varied by site and did not involve carbon- and sulfur-related functions only. Our findings highlight associations between methylating and non-methylating taxa and sulfur, carbon, and nitrogen cycles in sediment methylation zones, with implications for predicting and understanding the impact of climate and land/sea use changes on Hg methylation.

The first Neotropical and Afrotropical species of Microphorella Becker, with a key to the genera of Parathalassiinae and species of Microphorella from the Southern Hemisphere (Diptera: Dolichopodidae sensu lato).

Two new species of Microphorella Becker are described and illustrated from Chile and South Africa, respectively: M. amorimi sp. nov. (Maule Region) and M. irwini sp. nov. (Western Cape Province), representing the first formal records of the genus from the Neotropical and Afrotropical Regions. In addition, a key to the genera of Parathalassiinae and species of Microphorella from the Southern Hemisphere is also provided.

Coupling of nitric acid digestion and anion-exchange resin separation for the determination of methylmercury isotopic composition within organisms.

Isotope ratios of methylmercury (MeHg) within organisms can be used to identify sources of MeHg that have accumulated in food webs, but these isotopic compositions are masked in organisms at lower trophic levels by the presence of inorganic mercury (iHg). To facilitate measurement of MeHg isotope ratios in organisms, we developed a method of extracting and isolating MeHg from fish and aquatic invertebrates for compound-specific isotopic analysis involving nitric acid digestion, batch anion-exchange resin separation, and pre-concentration by purge and trap. Recovery of MeHg was quantified after each step in the procedure, and the average cumulative recovery of MeHg was 93.4 ± 2.9% (1 SD, n = 28) for biological reference materials and natural biota samples and 96.9 ± 1.8% (1 SD, n = 5) for aqueous MeHgCl standards. The amount of iHg impurities was also quantified after each step, and the average MeHg purity was 97.8 ± 4.3% (1 SD, n = 28) across all reference materials and natural biota samples after the final separation step. Measured MeHg isotopic compositions of reference materials agreed with literature values obtained using other MeHg separation techniques, and MeHg isotope ratios of aqueous standards, reference materials, and natural biota samples were reproducible. On average, the reproducibility associated with reference material process replicates (2 SD) was 0.10‰ for δ202MeHg and 0.04‰ for Δ199MeHg. This new method provides a streamlined, reliable technique that utilizes a single sample aliquot for MeHg concentration and isotopic analysis. This promotes a tight coupling between MeHg concentration, %MeHg, and Hg isotopic composition, which may be especially beneficial for studying complex food webs with multiple isotopically distinct sources of iHg and/or MeHg.

Establishment of the Microphorella breviradia species group, with a key to the Nearctic species groups of Microphorella Becker (Diptera: Dolichopodidae sensu lato: Parathalassiinae).

The Microphorella breviradia species group is established for three new species from western North America, namely Microphorella breviradia sp. nov., M. macdonaldi sp. nov. and M. vespera sp. nov., including an identification key to species. COI mitochondrial DNA barcode sequences were obtained for two of the three species and possibly suggest the existence of additional cryptic species. The phylogenetic relationships of the Microphorella breviradia species group to the remainder of the Microphorella species groups are reviewed on a worldwide basis. A key to the four known Nearctic species groups of Microphorella is also provided.

Diel mercury concentration variations in a mercury-impacted stream.

Filtered and particulate mercury (Hg) and methylmercury (MMHg), and associated water chemistry parameters, were evaluated bi-hourly for several 30 h periods during the summer and winter seasons at several distinct locations (downstream forested, midstream urban/suburban, upstream industrial) along a creek contaminated with high levels of inorganic Hg to determine if biogeochemical Hg and MMHg cycles respond to the daily photocycle. In summer particulate Hg and MMHg concentrations doubled overnight (excluding the upstream industrial site) concurrent with increases in turbidity and total suspended sediment; no such pattern was evident in winter. Seasonal and diel changes in the activity of macrobiota affecting the suspension of contaminated sediments are likely responsible for these patterns as other potential explanatory variables (e.g., instrument drift, pH, discharge) could not account for the range and timing of our observations. Diel patterns in filtered Hg (HgD) were significant only at locations and times of the year when channel shading was not present and daytime concentrations increased 22-89% above nighttime minima likely caused by direct and indirect photochemical reactions. Relationships between HgD and dissolved organic carbon (DOC) concentration or character were inconsistent between sites. Unlike HgD, there were significant diel patterns in filtered MMHg (MMHgD) at all sites and times of year, with summer concentrations peaking in mid to late afternoon while the timing differed in winter, with concentrations peaking after sunset. Daily variability in MMHgD concentration ranged between 25 and 75%. The results imply key controls on net methylation occur within the stream or on the stream bed and include factors such as small-scale temperature changes in the water column and photosynthetic activity of stream biofilm. With respect to stream monitoring, results from this study indicate (1) consistent timing in stream Hg and MMHg sampling is required for accurate assessment of long-term trends, (2) in situ measurements of turbidity can be used to quantify diel dynamics of both particulate Hg and MMHg concentrations, and (3) in situ fluorescing dissolved organic matter (FDOM), a potential proxy for DOC, was not capable of resolving diel dynamics of filtered Hg or MMHg.

Revision of the Nearctic Microphorinae (Diptera: Dolichopodidae sensu lato).

The Nearctic species of the dolichopodid subfamily Microphorinae are revised. Two genera and 33 species are recognized including five species of Microphor Macquart and 28 species of Schistostoma Becker. Both genera are redefined, redescribed and diagnosed, a key to the genera and species in the Nearctic Region is provided, the known geographical distribution of each species is mapped and ecological information is summarized. In addition to the three previously known species of Nearctic Schistostoma, i.e., S. armipes (Melander), S. sycophantor (Melander) and S. yakimense (Melander), the Nearctic fauna includes eight species newly transferred from Microphor as well as 17 new species. These species of Schistostoma are classified into four species groups as follows: the S. atratum species group including S. atratum (Coquillett, 1900) comb. nov., S. borkenti sp. nov., S. chloeae sp. nov. and S. lillyae sp. nov.; the S. isommatum species group including S. caroleae sp. nov., S. evisceratum (Melander, 1940b) comb. nov., S. fitzgeraldi sp. nov., S. isommatum (Melander, 1928) comb. nov., S. powelli sp. nov., S. shamshevi sp. nov., S. sinclairi sp. nov., S. susanae sp. nov. and S. tacomae (Melander, 1940b) comb. nov.; the S. ravidum species group including S. armipes (Melander, 1928), S. arnaudi sp. nov., S. cirripes (Melander, 1940b) comb. nov., S. heatherae sp. nov., S. longistylum sp. nov., S. michaeli sp. nov., S. oharai sp. nov., S. ravidum (Coquillett, 1895) comb. nov., S. robustum (Melander, 1928) comb. nov., S. rudei sp. nov., S. strigilifer (Melander, 1940b) comb. nov. and S. sycophantor (Melander, 1902); and the S. yakimense species group including S. pecki sp. nov., S. runyoni sp. nov. and S. yakimense (Melander, 1928). Schistostoma ravum (Melander, 1940b) comb. nov. is also transferred from Microphor and is newly synonymized with S. evisceratum (Melander, 1940b), syn. nov. The Nearctic members of Microphor now comprise only three of the previously known species, plus two new species. These five species are classified into two species groups as follows: the M. discalis species group including M. discalis Melander, 1940b, M. skevingtoni sp. nov. and M. turneri sp. nov.; and the M. obscurus species group including M. bilineatus (Melander, 1902) and M. obscurus Coquillett, 1903. Lectotype designations are made for Holoclera bilineata Melander, Microphorus armipes Melander, Microphorus ravidus Coquillett, Microphorus strigilifer Melander and Holoclera sycophantor Melander.

Incorporating concentration-dependent sediment microbial activity into methylmercury production kinetics modeling.

In anoxic environments, anaerobic microorganisms carrying the hgcAB gene cluster can mediate the transformation of inorganic mercury (Hg(II)) to monomethylmercury (MMHg). The kinetics of Hg(II) transformation to MMHg in periphyton from East Fork Poplar Creek (EFPC) in Oak Ridge, TN have previously been modeled using a transient availability model (TAM). The TAM for Hg(II) methylation combines methylation/demethylation kinetics with kinetic expressions for processes that decrease Hg(II) and MMHg availability for methylation and demethylation (multisite sorption of Hg(II) and MMHg, Hg(II) reduction/Hg(0) oxidation). In this study, the TAM is used for the first time to describe MMHg production in sediment. We assessed MMHg production in sediment microcosms using two different sediment types from EFPC: a relatively anoxic, carbon-rich sediment with higher microbial activity (higher CO2 production from sediment) and a relatively oxic, sandy, carbon-poor sediment with lower microbial activity (lower CO2 production from sediment). Based on 16s rRNA sequencing, the overall microbial community structure in the two sediments was retained during the incubations. However, the hgcA containing methanogenic Euryarchaeota communities differed between sediment types and their growth followed different trajectories over the course of incubations, potentially contributing to the distinct patterns of MMHg production observed. The general TAM paradigm performed well in describing MMHg production in the sediments. However, the MMHg production and ancillary data suggested the need to revise the model structure to incorporate terms for concentration-dependent microbial activity over the course of the incubations. We modified the TAM to include Monod-type kinetics for methylation and demethylation and observed an improved fit for the carbon-rich, microbially active sediment. Overall our work shows that the TAM can be applied to describe Hg(II) methylation in sediments and that including expressions accounting for concentration-dependent microbial activity can improve the accuracy of the model description of the data in some cases.

New Australasian Parathalassiinae (Diptera: Dolichopodidae sensu lato).

One species of Chimerothalassius Shamshev & Grootaert, namely C. marshalli sp. nov. is described from New Zealand, and two other species, namely C. riparius sp. nov. and C. sinclairi sp. nov. are described from New Caledonia. Two species of Microphorella Becker, namely M. bungle sp. nov. and M. viticula sp. nov., are described from Australia. These new parathalassiine descriptions increase the Australasian species diversity of Chimerothalassius and Microphorella to four species each. In addition, the genus Eothalassius Shamshev & Grootaert is recorded from New Caledonia based on a single female, and the male genitalia of the Australian species M. iota Colless is newly illustrated. A key to the genera and species of male Parathalassiinae in the Australasian Region is also provided.

Mechanistic Investigation of Dimethylmercury Formation Mediated by a Sulfide Mineral Surface.

Mercury (Hg) pollution is a global environmental problem. The abiotic formation of dimethylmercury (DMeHg) from monomethylmercury (MMeHg) may account for a large portion of DMeHg in oceans. Previous experimental work has shown that abiotic formation of DMeHg from MMeHg can be facilitated by reduced sulfur groups on sulfide mineral surfaces. In that work, a mechanism was proposed in which neighboring MMeHg moieties bound to sulfide sites on a mineral surface react through an SN2-type mechanism to form DMeHg and incorporate the remaining Hg atoms into the mineral surface. Here, we perform density functional theory calculations to explore the mechanisms of DMeHg formation on the 110 surface of a CdS(s) (hawleyite) nanoparticle. We show that coordination of MMeHg substituents to adjacent reduced sulfur groups protruding from the surface indeed facilitates DMeHg formation and that the reaction proceeds through direct transmethylation from one MMeHg substituent to another. Coordination of Hg by multiple S atoms provides a transition-state stabilization and activates a C-Hg bond for methyl transfer. In addition, solvation effects play an important role in the surface reconstruction of the nanoparticle and in decreasing the energetic barrier for DMeHg formation relative to the corresponding reaction in vacuo.

Complete Genome Sequences of Two Gammaproteobacterial Methanotrophs Isolated from a Mercury-Contaminated Stream.

The genomes of Methylomonas sp. strain EFPC1 and Methylococcus sp. strain EFPC2, isolated from a mercury-contaminated stream in Oak Ridge, Tennessee, were sequenced.

Use of sequential extraction and mercury stable isotope analysis to assess remobilization of sediment-bound legacy mercury.

The goal of this project was to assess how anthropogenic legacy mercury (Hg) retained in streambed sediment may be remobilized to stream water. To do this, we performed sequential extractions and Hg isotope analyses on streambed sediment collected along the length of East Fork Poplar Creek, a point-source contaminated stream in Oak Ridge, Tennessee, USA. Legacy Hg within streambed sediment appears to have been isotopically fractionated by equilibrium isotope effects driven by isotope exchange between co-existing Hg(0) and Hg(ii) species, potentially over-printing fractionation patterns that would have been imparted by kinetic redox reactions. Weakly-bound and recalcitrant sediment Hg pools were isotopically similar to one another, suggesting that small amounts of recalcitrant Hg may be released and then rapidly and weakly re-adsorbed onto the sediment. This weakly-bound Hg pool appears to contribute dissolved Hg to the hyporheic pore water, which may subsequently enter the surface flow. The isotopic composition of the organically-bound sediment Hg pools, as well as biofilm and suspended particulates, converged with that of the weakly-bound and recalcitrant sediment Hg pools along the flow path. This appears to be indicative of both physical mixing with streambed sediment and the transfer of weakly-bound sediment Hg into biofilm and suspended particulates, followed by re-incorporation into the organically-bound sediment Hg pool. Overall, these results provide evidence that legacy Hg in the streambed is remobilized, enters the stream water as dissolved Hg, and may be incorporated into streambed biofilm, which constitutes a basal resource within the stream ecosystem.

Reduction and bacterial adsorption of dissolved mercuric ion by indigenous bacteria at the Oak Ridge Reservation site.

Mercury exists in various forms in the environment and the indigenous bacteria mediated processes have the potential to be used for mercury remediation. In this study, two mixed cultures of indigenous bacteria at the Oak Ridge Reservation site (i.e., ORR soil culture and ORR sediment culture) were selected to study the microbial mediated mercuric reduction under an aerobic condition as well as mercury adsorption onto bacterial surfaces. PCR analysis was performed to provide insights into the microbial community. The mercuric volatilizing experiment demonstrated the mercuric reducing capacity for both ORR cultures, in which the Pseudomonas genus was the dominating Hg0 producer. The investigation of the impact of the sole carbon source revealed the energy-dependent characteristics of the mercuric reduction in this study. Namely, the mercuric reduction was nearly not impacted by the type of carbon source but positively related to the energy that a unit amount of substrate could provide. The study also indicated that the mercury adsorption competed with the reduction. According to the fitting of the Langmuir isotherm, the ORR soil culture was found to have a higher mercury adsorption capacity (i.e., 67.5 mg Hg/g dry biomass) than the ORR sediment culture (i.e., 53.1 mg Hg/g dry biomass). The negative correlation between the reduced mercury mass and adsorbed mercury mass was identified for both ORR cultures.

Nutrient Exposure Alters Microbial Composition, Structure, and Mercury Methylating Activity in Periphyton in a Contaminated Watershed.

The conversion of mercury (Hg) to monomethylmercury (MMHg) is a critical area of concern in global Hg cycling. Periphyton biofilms may harbor significant amounts of MMHg but little is known about the Hg-methylating potential of the periphyton microbiome. Therefore, we used high-throughput amplicon sequencing of the 16S rRNA gene, ITS2 region, and Hg methylation gene pair (hgcAB) to characterize the archaea/bacteria, fungi, and Hg-methylating microorganisms in periphyton communities grown in a contaminated watershed in East Tennessee (United States). Furthermore, we examined how nutrient amendments (nitrate and/or phosphate) altered periphyton community structure and function. We found that bacterial/archaeal richness in experimental conditions decreased in summer and increased in autumn relative to control treatments, while fungal diversity generally increased in summer and decreased in autumn relative to control treatments. Interestingly, the Hg-methylating communities were dominated by Proteobacteria followed by Candidatus Atribacteria across both seasons. Surprisingly, Hg methylation potential correlated with numerous bacterial families that do not contain hgcAB, suggesting that the overall microbiome structure of periphyton communities influences rates of Hg transformation within these microbial mats. To further explore these complex community interactions, we performed a microbial network analysis and found that the nitrate-amended treatment resulted in the highest number of hub taxa that also corresponded with enhanced Hg methylation potential. This work provides insight into community interactions within the periphyton microbiome that may contribute to Hg cycling and will inform future research that will focus on establishing mixed microbial consortia to uncover mechanisms driving shifts in Hg cycling within periphyton habitats.

Metagenome-Assembled Genome Sequences of Novel Prokaryotic Species from the Mercury-Contaminated East Fork Poplar Creek, Oak Ridge, Tennessee, USA.

We sequenced two metagenomes of sediments from the East Fork Poplar Creek in the Oak Ridge Reservation (Oak Ridge, TN), a natural stream that has been contaminated with Hg from upstream sources, and we reconstructed 28 metagenome-assembled genomes of novel prokaryotic species.

Revision of the Empis (Enoplempis) mira species group (Diptera: Empididae).

The Empis (Enoplempis) mira species group is revised and includes the type species of Enoplempis and four new species (E. macdonaldi sp. nov., E. submira sp. nov., E. williamturneri sp. nov., E. winkleri sp. nov.). A lectotype is designated for Enoplempis mira Bigot. The species group is defined by the yellow body colour, directionally asymmetrical male hindlegs and geniculate hindlegs in both males and females. The group has not been found outside of western North America and is known from California, Oregon, Idaho and Washington.

Molecular Dynamics Simulation of the Structures, Dynamics, and Aggregation of Dissolved Organic Matter.

Dissolved organic matter (DOM) plays a significant role in the transport and transformation of pollutants in the aquatic environment. However, the experimental characterization of DOM has been limited mainly to bulk properties, and the molecular-level interactions among various components of DOM remain to be fully characterized. Here, we use molecular dynamics (MD) simulations to probe the structural properties of model DOM systems at atomic detail. The 200 ns simulations, validated by available experimental data, reveal processes and mechanisms by which chemical species (cations, peptides, lipids, lignin, carbohydrates, and some low-molecular-weight aliphatic and aromatic compounds) aggregate to form complex DOM. The DOM aggregates are dynamic, consisting of a hydrophobic core and amphiphilic exterior. The lipid tails and other hydrophobic fragments form the core, with hydrophilic and amphiphilic groups exposed to water, making DOM accessible to both polar and nonpolar species. Thus, the lipid component acts as a nucleator, whereas cations (especially Ca2+) connect the molecular fragments on the surface by coordinating with the O-containing functional groups of DOM. The structural details revealed here provide new insights including surface accessible atoms, overall assemblage, and interactions among the molecules of DOM for understanding the kinetics and mechanisms through which DOM interacts with metal and other contaminants.

Characterization of Bacterial and Fungal Assemblages From Historically Contaminated Metalliferous Soils Using Metagenomics Coupled With Diffusion Chambers and Microbial Traps.

The majority of environmental microbiomes are not amenable to cultivation under standard laboratory growth conditions and hence remain uncharacterized. For environmental applications, such as bioremediation, it is necessary to isolate microbes performing the desired function, which may not necessarily be the fast growing or the copiotroph microbiota. Toward this end, cultivation and isolation of microbial strains using diffusion chambers (DC) and/or microbial traps (MT) have both been recently demonstrated to be effective strategies because microbial enrichment is facilitated by soil nutrients and not by synthetically defined media, thus simulating their native habitat. In this study, DC/MT chambers were established using soils collected from two US Department of Energy (DOE) sites with long-term history of heavy metal contamination, including mercury (Hg). To characterize the contamination levels and nutrient status, soils were first analyzed for total mercury (THg), methylmercury (MeHg), total carbon (TC), total nitrogen (TN), and total phosphorus (TP). Multivariate statistical analysis on these measurements facilitated binning of soils under high, medium and low levels of contamination. Bacterial and fungal microbiomes that developed within the DC and MT chambers were evaluated using comparative metagenomics, revealing Chthoniobacter, Burkholderia and Bradyrhizobium spp., as the predominant bacteria while Penicillium, Thielavia, and Trichoderma predominated among fungi. Many of these core microbiomes were also retrieved as axenic isolates. Furthermore, canonical correspondence analysis (CCA) of biogeochemical measurements, metal concentrations and bacterial communities revealed a positive correlation of Chthoniobacter/Bradyrhizobium spp., to THg whereas Burkholderia spp., correlated with MeHg. Penicillium spp., correlated with THg whereas Trichoderma spp., and Aspergillus spp., correlated with MeHg, from the MT approach. This is the first metagenomics-based assessment, isolation and characterization of soil-borne bacterial and fungal communities colonizing the diffusion chambers (DC) and microbial traps (MT) established with long-term metal contaminated soils. Overall, this study provides proof-of-concept for the successful application of DC/MT based assessment of mercury resistant (HgR) microbiomes in legacy metal-contaminated soils, having complex contamination issues. Overall, this study brings out the significance of microbial communities and their relevance in context to heavy metal cycling for better stewardship and restoration of such historically contaminated systems.

A new species of Philetus Melander (Diptera: Empididae) from the Yukon Territory, Canada.

The Nearctic genus Philetus Melander, 1928 is a rarely collected group of empidid flies that contains two western species, namely P. memorandus Melander and P. schizophorus Melander. The genus was fully diagnosed by Cumming et al. (2016) with both known species redescribed and their distributions mapped. Here we describe a third species of Philetus from a single male collected recently in the Richardson Mountains of the Yukon Territory in Canada and provide a key to species based on male morphology. Terms used for adult structures follow those of Cumming Wood (2017) and methods follow those outlined in Cumming et al. (2016).

The AQUA-MER databases and aqueous speciation server: A web resource for multiscale modeling of mercury speciation.

To assess the chemical reactivity, toxicity, and mobility of pollutants in the environment, knowledge of their species distributions is critical. Because their direct measurement is often infeasible, speciation modeling is widely adopted. Mercury (Hg) is a representative pollutant for which study of its speciation benefits from modeling. However, Hg speciation modeling is often hindered by a lack of reliable thermodynamic constants. Although computational chemistry (e.g., density functional theory [DFT]) can generate these constants, methods for directly coupling DFT and speciation modeling are not available. Here, we combine computational chemistry and continuum-scale modeling with curated online databases to ameliorate the problem of unreliable inputs to Hg speciation modeling. Our AQUA-MER databases and web server (https://aquamer.ornl.gov) provides direct speciation results by combining web-based interfaces to a speciation calculator, databases of thermodynamic constants, and a computational chemistry toolkit to estimate missing constants. Although Hg is presented as a concrete use case, AQUA-MER can also be readily applied to other elements. © 2019 Wiley Periodicals, Inc.

Remarkable new fossil species of Schistostoma Becker (Diptera: Dolichopodidae: Microphorinae) from mid-Cretaceous Burmese amber.

Two closely related and distinctive species of Schistostoma Becker, i.e. Schistostoma burmanicum sp. nov. and Schistostoma foliatum sp. nov., are described from two male specimens preserved in mid-Cretaceous Burmese amber and recorded as the first known fossil representatives of this extant genus of Microphorinae. Both species possess greatly enlarged lamellate fore tibiae and modified leg chaetotaxy that are presumably male secondary sexual features. The generic limits of Schistostoma are briefly discussed and a rationale for the inclusion of these new species is provided.