Dynamics of miRNA accumulation during C. elegans larval development.

Temporally and spatially controlled accumulation underlies the functions of microRNAs (miRNAs) in various developmental processes. In Caenorhabditis elegans, this is exemplified by the temporal patterning miRNAs lin-4 and let-7, but for most miRNAs, developmental expression patterns remain poorly resolved. Indeed, experimentally observed long half-lives may constrain possible dynamics. Here, we profile miRNA expression throughout C. elegans postembryonic development at high temporal resolution, which identifies dynamically expressed miRNAs. We use mathematical models to explore the underlying mechanisms. For let-7, we can explain, and experimentally confirm, a striking stepwise accumulation pattern through a combination of rhythmic transcription and stage-specific regulation of precursor processing by the RNA-binding protein LIN-28. By contrast, the dynamics of several other miRNAs cannot be explained by regulation of production rates alone. Specifically, we show that a combination of oscillatory transcription and rhythmic decay drive rhythmic accumulation of miR-235, orthologous to miR-92 in other animals. We demonstrate that decay of miR-235 and additional miRNAs depends on EBAX-1, previously implicated in target-directed miRNA degradation (TDMD). Taken together, our results provide insight into dynamic miRNA decay and establish a resource to studying both the developmental functions of, and the regulatory mechanisms acting on, miRNAs.

Prevalences of cardiometabolic risk and lifestyle factors in young parents: evidence from a German birth cohort study.

BACKGROUND: Studies show that parents significantly impact their children's health through their cardiometabolic risk profile and health behavior. There is only little information about the prevalence of cardiometabolic risk factors and lifestyle factors among new parents yet. The aims of this study are therefore to evaluate the prevalences of cardiometabolic risk factors in parents of infants in Germany and to examine their lifestyle and health behavior. METHODS: In the KUNO-Kids health study, an ongoing birth cohort, parents (n = 930 mothers and 769 fathers) were asked about cardiometabolic risk factors (obesity/hypertension/type 2 diabetes mellitus) and lifestyle factors (dietary/sports/smoking habits/alcohol consumption) during the first year after the birth of their children via questionnaires. Chi-square as well as fisher exact tests were conducted to analyse associations between lifestyle factors and cardiometabolic risk factors. RESULTS: 34.2% of mothers and 58.5% of fathers were overweight or obese. In 11.8% of the families, at least one parent suffered from hypertension, in 2.4% from type 2 diabetes mellitus. One year after delivery, 8.5% of mothers were smoking, 6.9% showed a risky alcohol consumption (> 10 g/d). 16.0% of fathers were smoking 4 weeks after childbirth, 10.7% showed risky alcohol consumption (> 20 g/d). 21.6% of mothers carried out sports activity for more than 2 h a week then. Parental hypertension was linked to a higher prevalence of risky alcohol consumption, obesity to a lower prevalence of daily fruits consumption. CONCLUSIONS: Cardiometabolic risk factors were widespread among new parents with obesity and overweight having the highest prevalences. A considerable number of parents also practiced an unhealthy lifestyle showing that there is potential for improvement to promote the healthy development of their children.

The influence of coarticulatory and phonemic relations on individual compensatory formant production.

Previous auditory perturbation studies have shown that speakers are able to simultaneously use multiple compensatory strategies to produce a certain acoustic target. In the case of formant perturbation, these findings were obtained examining the compensatory production for low vowels /ɛ/ and /æ/. This raises some controversy as more recent research suggests that the contribution of the somatosensory feedback to the production of vowels might differ across phonemes. In particular, the compensatory magnitude to auditory perturbations is expected to be weaker for high vowels compared to low vowels since the former are characterized by larger linguopalatal contact. To investigate this hypothesis, this paper conducted a bidirectional auditory perturbation study in which F2 of the high central vowel /ɨ/ was perturbed in opposing directions depending on the preceding consonant (alveolar vs velar). The consonants were chosen such that speakers' usual coarticulatory patterns were either compatible or incompatible with the required compensatory strategy. The results demonstrate that speakers were able to compensate for applied perturbations even if speakers' compensatory movements resulted in unusual coarticulatory configurations. However, the results also suggest that individual compensatory patterns were influenced by additional perceptual factors attributable to the phonemic space surrounding the target vowel /ɨ/.

Cultivation of vancomycin-resistant enterococci and methicillin-resistant staphylococci from input and output samples of German biogas plants.

Vancomycin-resistant enterococci (VRE) and methicillin-resistant staphylococci (MRS) were detected in two mesophilic German biogas plants (BGPs) using selective pre-enrichment methods combined with cultivation on CHROMagar media and antibiotic resistance gene screening. Genetic fingerprinting and 16S rRNA gene sequencing showed the presence of enterococci isolated by the VRE selective cultivation (67 isolates) in input and output samples of BGPs. In contrast, MRS (44 isolates) were detected in input, but in none of the output samples. Enterococcus isolates showed highest 16S rRNA gene sequence similarity (>99.8%) to E. lemanii, E. casseliflavus/E. gallinarium or E. devriesei/E. pseudoavium/E. viikkiensis and carried vanA, vanB and/or vanC1 genes. Enterococcus faecium and E. faecalis VRE were not detected, but isolates closely related to those species (>99.9% 16S rRNA gene sequence similarity) were detected by the MRS selective cultivation methods. Staphylococcus isolates shared highest 16S rRNA gene sequence similarity (>99.9%) with S. haemolyticus, S. lentus and S. sciuri and carried mecA genes. Methicillin-resistant S. aureus (MRSA) were not detected. In summary, manure from livestock husbandry contained both, VRE and MRS. VRE were also detected in output samples, indicating that enterococci with vancomycin resistance genes could be release into the environment by the application of BGP output material as biofertilizers.

Inter-speaker articulatory variability during vowel-consonant-vowel sequences in twins and unrelated speakers.

The purpose of this study is to examine and compare the amount of inter-speaker variability in the articulation of monozygotic twin pairs (MZ), dizygotic twin pairs (DZ), and pairs of unrelated twins with the goal of examining in greater depth the influence of physiology on articulation. Physiological parameters are assumed to be very similar in MZ twin pairs in contrast to DZ twin pairs or unrelated speakers, and it is hypothesized that the speaker specific shape of articulatory looping trajectories of the tongue is at least partly dependent on biomechanical properties and the speaker's individual physiology. By means of electromagnetic articulography (EMA), inter-speaker variability in the looping trajectories of the tongue back during /VCV/ sequences is analyzed. Results reveal similar looping patterns within MZ twin pairs but in DZ pairs differences in the shape of the loop, the direction of the upward and downward movement, and the amount of horizontal sliding movement at the palate are found.

Motor equivalent strategies in the production of German /∫/ under perturbation.

The German sibilant /∫/ is produced with a constriction in the postalveolar region and often with protruded lips. By covarying horizontal lip and tongue position speakers can keep a similar acoustic output even if the articulation varies. This study investigates whether during two weeks of adaptation to an artificial palate speakers covary these two articulatory parameters, whether tactile landmarks have an influence on the covariation and to what extent speakers can foresee the acoustic result of the covariation without auditory feedback. Six German speakers were recorded with EMA. Four of them showed a covariation of lip and tongue, which is consistent with the motor equivalence hypothesis. The acoustic output, however, does not stay entirely constant but varies with the tongue position. The role of tactile landmarks is negligible. To a certain extent, speakers are able to adapt even without auditory feedback.

Adaptation strategies in perturbed /s/.

The purpose of this work is to investigate the role of three articulatory parameters (tongue position, jaw position and tongue grooving) in the production of /s/. Six normal speakers' speech was perturbed by a palatal prosthesis. The fricative was recorded acoustically and through electromagnetic articulography in four conditions: (1) unperturbed, (2) perturbed with auditory feedback masked, (3) perturbed with auditory feedback available and (4) perturbed after a 2-week adaptation period. At the end of the adaptation, speakers produced more high-frequency noise while either having a higher jaw position or more grooving of the tongue or both. We discuss the potential clinical implications of the results with regard to the role of jaw height and tongue grooving in the treatment of impaired /s/.

The influence of auditory acuity on acoustic variability and the use of motor equivalence during adaptation to a perturbation.

PURPOSE: The aim of this study was to relate speakers' auditory acuity for the sibilant contrast, their use of motor equivalent trading relationships in producing the sibilant /∫/, and their produced acoustic distance between the sibilants /s/ and /∫/. Specifically, the study tested the hypotheses that during adaptation to a perturbation of vocal-tract shape, high-acuity speakers use motor equivalence strategies to a greater extent than do low-acuity speakers in order to reach their smaller phonemic goal regions, and that high-acuity speakers produce greater acoustic distance between 2 sibilant phonemes than do low-acuity speakers. METHOD: Articulographic data from 7 German speakers adapting to a perturbation were analyzed for the use of motor equivalence. The speakers' produced acoustic distance between /s/ and /∫/ was calculated. Auditory acuity was assessed for the same speakers. RESULTS: High-acuity speakers used motor equivalence to a greater extent when adapting to a perturbation than did low-acuity speakers. Additionally, high-acuity speakers produced greater acoustic contrasts than did low-acuity-speakers. It was observed that speech rate had an influence on the use of motor equivalence: Slow speakers used motor equivalence to a lesser degree than did fast speakers. CONCLUSION: These results provide support for the mutual interdependence of speech perception and production.

On the relationship between palate shape and articulatory behavior.

In this study the acoustic and articulatory variabilities of speakers with different palate shapes were compared. Since the cross-sectional area of the vocal tract changes less for a slight change in tongue position if the palate is domeshaped than if it is flat, the acoustic variability should be greater for flat palates than for domeshaped ones. Consequently, it can be hypothesized that speakers with flat palates should reduce their articulatory variability in order to keep the acoustic output constant. This hypothesis was tested on 32 speakers recorded via electropalatography (EPG) and acoustics. The articulatory and acoustic variability of some of their vowels and /j/ was measured. Indeed, the results show that the speakers with flat palates reduce their variability in tongue height. There is no such trend in acoustic variability.