A novel derivative synchronous fluorescence method for the rapid, non-destructive and intuitive differentiation of denitrifying bacteria.

It is challenging to differentiate bacteria residing in the same habitat by direct observation. This difficulty impedes the harvest, application and manipulation of functional bacteria in environmental engineering. In this study, we developed a novel method for rapid differentiation of living denitrifying bacteria based on derivative synchronous fluorescence spectroscopy, as exemplified by three heterotrophic nitrification-aerobic denitrification bacteria having the maximum nitrogen removal efficiencies greater than 90%. The intact bacteria and their living surroundings can be analyzed as an integrated target, which eliminates the need for the complex pre-processing of samples. Under the optimal synchronous scanning parameter (Δλ = 40 nm), each bacterium possesses a unique fluorescence spectral structure and the derivative synchronous fluorescence technique can significantly improve the spectral resolution compared to other conventional fluorescence methods, which enables the rapid differentiation of different bacteria through derivative synchronous fluorescence spectra as fast as 2 min per spectrum. Additionally, the derivative synchronous fluorescence technique can extract the spectral signals contributed by bacterial extracellular substances produced in the biological nitrogen removal process. Moreover, the results obtained from our method can reflect the real-time denitrification properties of bacteria in the biological nitrogen removal process of wastewater. All these merits highlight derivative synchronous fluorescence spectroscopy as a promising analytic method in the environmental field.

Metallic Nanofilm Enhanced Fluorescence Cell Imaging: A Study of Distance-Dependent Intensity and Lifetime by Optical Sectioning Microscopy.

Simple, stable, easily-fabricated smooth metallic nanofilm can improve the imaging intensity and imaging contrast. However, its application in micrometer-scale cells has not been popularized due to the lack of full understanding of their related fluorescence properties. In this study, fluorescence enhancement of cell imaging on smooth Au nanofilm was investigated over a micrometer-scale range via employment of the optical sectioning method available with a laser scanning confocal fluorescence microscope. The fluorescence enhancement reduced with the distance away from the surface of metallic nanofilm, and this distance dependence was determined by the factors of numerical aperture, dye-substrate distance, and emission wavelength. In addition, distance-dependent fluorescence lifetime images of cells were also measured to study the interaction between fluorophores and metallic film. The enhancement effect of Au nanofilm on fluorescence cell imaging can be induced not only by the standing wave formed by the reflected light and exciting light but also by the interaction between fluorophore and surface plasmons on the metallic nanofilm. Our study on smooth metallic nanofilm should pave the way for utilizing its uniform fluorescence enhancement characteristic for biological imaging.

High performance dual-mode surface plasmon coupled emission imaging apparatus integrating Kretschmann and reverse Kretschmann configurations for flexible measurements.

A Kretschmann (KR) and reverse Kretschmann (RK) dual-mode surface plasmon coupled emission (SPCE) imaging apparatus based on prism coupling was built up. Highly directional and polarized fluorescence images for both RK and KR configurations were obtained. Besides, surface plasmon field-enhanced fluorescence and free space imaging can also be measured conveniently from this apparatus. Combining the high sensitivity of KR mode and the simplicity of RK mode, the multifunctional imaging system is flexible to provide different configurations for imaging applications. Compared to the free space imaging, SPCE imaging provides enhanced fluorescence, especially large enhancement up to about 50 fold in KR configuration. Additionally, the degree of evanescent field enhancement effect was easily estimated experimentally using the apparatus to compare the different imaging configurations. We believed that the dual-mode SPCE imaging apparatus will be useful in fundamental study of plasmon-controlled fluorescence and be a powerful tool for optical imaging, especially for microarray and biological applications.

Surface Plasmon-Coupled Directional Enhanced Raman Scattering by Means of the Reverse Kretschmann Configuration.

Surface-enhanced Raman scattering (SERS) is a unique analytical technique that provides fingerprint spectra, yet facing the obstacle of low collection efficiency. In this study, we demonstrated a simple approach to measure surface plasmon-coupled directional enhanced Raman scattering by means of the reverse Kretschmann configuration (RK-SPCR). Highly directional and p-polarized Raman scattering of 4-aminothiophenol (4-ATP) was observed on a nanoparticle-on-film substrate at 46° through the prism coupler with a sharp angle distribution (full width at half-maximum of ∼3.3°). Because of the improved collection efficiency, the Raman scattering signal was enhanced 30-fold over the conventional SERS mode; this was consistent with finite-difference time-domain simulations. The effect of nanoparticles on the coupling efficiency of propagated surface plasmons was investigated. Possessing straightforward implementation and directional enhancement of Raman scattering, RK-SPCR is anticipated to simplify SERS instruments and to be broadly applicable to biochemical assays.

Modulation of surface plasmon coupled emission (SPCE) by a pulsed magnetic field.

The unique modulation of surface plasmon coupled emission (SPCE) on a Au/Cr/Co/Cr/glass substrate by an external magnetic field has been observed. The most positive regulation was triggered by employing the multilayered substrate with a 7.5 nm-thick Co layer. The new magnetoplasmonic strategy provides a simple way to modulate the SPCE signal.

Surface plasmon coupled emission in micrometer-scale cells: a leap from interface to bulk targets.

Surface plasmon coupled emission (SPCE) technique has attracted increasing attention in biomolecular interaction analysis and cell imaging because of its high sensitivity, low detection volume and low fluorescence background. Typically, the working range of SPCE is limited at nanometers to an interface. For micrometer-scale samples, new SPCE properties are expected because of complex coupling modes. In this work, cells with different subregions labeled were studied using a SPCE spectroscopy system. Angular and p-polarized emission was observed for cell membrane, cytoplasm, and nucleus labeled with DiI, Nile Red, and propidium iodide, respectively. The SPCE signals were always partially p-polarized, and the maximum emission angle did not shift, regardless of variations in emission wavelength, fluorophore distribution and stained layer thickness. Additionally, increased polarization and a broader angle distribution were also observed with an increase in sample thickness. We also investigated the impact of metallic substrates on the SPCE properties of cells. Compared with Au and Ni substrates, Al substrates presented better polarization and angle distribution. Moreover, the real-time detection of the cell labeling process was achieved by monitoring SPCE intensity. These findings expand SPCE from a surface technique to a 3D method for investigating bulk targets beyond the nanoscale interfaces, providing a basis to apply this technique to study cell membrane fluidity and biomolecule interactions inside the cell and to distinguish between cell subregions.

Label-free aptasensor based on ultrathin-linker-mediated hot-spot assembly to induce strong directional fluorescence.

We have demonstrated the proof-of-concept of a label-free biosensor based on emission induced by an extreme hot-spot plasmonic assembly. In this work, an ultrathin linking layer composed of cationic polymers and aptamers was fabricated to mediate the assembly of a silver nanoparticles (AgNPs)-dyes-gold film with a strongly coupled architecture through sensing a target protein. Generation of directional surface plasmon coupled emission (SPCE) was thus stimulated as a means of reporting biorecognition. Both the biomolecules and the nanoparticles were totally free of labeling, thereby ensuring the activity of biomolecules and allowing the use of freshly prepared metallic nanoparticles with large dimensions. This sensor smartly prevents the plasmonic assembly in the absence of targets, thus maintaining no signal through quenching fluorophores loaded onto a gold film. In the presence of targets, the ultrathin layer is activated to link NPs-film junctions. The small gap of the junction (no greater than 2 nm) and the large diameter of the nanoparticles (~100 nm) ensure that ultrastrong coupling is achieved to generate intense SPCE. A >500-fold enhancement of the signal was observed in the biosensing. This strategy provides a simple, reliable, and effective way to apply plasmonic nanostructures in the development of biosensing.

Plasmon-mediated fluorescence with distance independence: from model to a biosensing application.

In this article, plasmon-mediated fluorescence biosensing is reported to be distance independent through a full-coupling strategy that effectively activates the entire plasmon coupling region. This concept is demonstrated through collecting the directional surface plasmon-coupled emission (SPCE) signal from fluorescent silica nanoparticles with a size that matches the entire coupling region. Based on this design, the spatial distribution of the fluorophores is confined by the dimension of the nanoparticle. Therefore, these encapsulated fluorophores occupy the maximum coupling dominant region and optimally utilize the coupling effect. Being different from the conventional plasmon-mediated fluorescence, the enhanced fluorescence response becomes nearly independent of distance changes on a wide dynamic range from 0nm to 30nm between the fluorescent nanoparticles and metal structure. Full-coupling SPCE appropriately enlarges the distribution of fluorophores, ensuring that the coupling dominant region is filled with enough fluorophores at varying distances to create a stable and detectable signal. This scale of distances is well suited for many biorecognition events. Full-coupling SPCE solves signal deviation challenges originating from the susceptible and unpredictable orientation and conformation of biomolecules on the nanoscale. Immunoassays and DNA detection are shown with high and reliable signals, demonstrating the advantages of distance-independent full coupling. Without the need of a complicated and rigorous architecture for precise distance control, full-coupling SPCE offers great promise for a general platform of chip-based biosensing and bioanalysis.

Turning on fluorescence by plasmonic assembly with large tunable spacing: a new observation and its biosensing application.

Assembling nanoparticle-film metallic junctions with a spacing of up to tens of nanometers efficiently turned on fluorophores attached to the film from the quenching status to an intense surface plasmon-coupled emission. Benefiting from this new finding, a fluorescence biosensor was created based on the use of a biomolecule-linked plasmonic assembly as the trigger.

Prism-based surface plasmon coupled emission imaging.

A prism-based surface plasmon coupled emission (SPCE) imaging apparatus with a reverse Kretschmann (RK) configuration was developed and applied to dye-doped polymer films. Highly polarized, directional and enhanced fluorescence images were obtained. The angular distribution of the SPCE images was in accordance with the validated theoretical calculation performed using Fresnel equation. Prism-based SPCE imaging combined with microarray technology appears to be a promising platform for rapid and high-throughput analysis, especially for high-density arrays. We believe that prism-based SPCE imaging has potential applications in biochemical research.

Surface plasmon-coupled emission: what can directional fluorescence bring to the analytical sciences?

Surface plasmon-coupled emission (SPCE) arose from the integration of fluorescence and plasmonics, two rapidly expanding research fields. SPCE is revealing novel phenomena and has potential applications in bioanalysis, medical diagnostics, drug discovery, and genomics. In SPCE, excited fluorophores couple with surface plasmons on a continuous thin metal film; plasmophores radiate into a higher-refractive index medium with a narrow angular distribution. Because of the directional emission, the sensitivity of this technique can be greatly improved with high collection efficiency. This review describes the unique features of SPCE. In particular, we focus on recent advances in SPCE-based analytical platforms and their applications in DNA sensing and the detection of other biomolecules and chemicals.

Observations of the effect of confined space on fluorescence and diffusion properties of molecules in single conical nanopore channels.

In this work, we investigated the fluorescence emission spectra and diffusion properties of dye molecules confined in different positions of conical nanopore channels using a laser scanning confocal fluorescence microscope. The results showed that a red shift of the emission spectra is observed from the tip section to the bottom section and the diffusion rate is slower in the channel than that in bulk solution, indicating a single conical nanopore channel can be used as a convenient tool for investigating the effect of confined space on the behaviors of molecules.

Electric field assisted surface plasmon-coupled directional emission: an active strategy on enhancing sensitivity for DNA sensing and efficient discrimination of single base mutation.

We have demonstrated the proof-of-principle of electric field assisted surface plasmon-coupled directional emission (E-SPCDE). The combination of SPCDE and electric field control produced a significant synergistic effect to amplify the right signal and suppress the wrong signal intelligently in an active strategy. A novel hairpin structured DNA biosensor based on the quenching and enhancing of fluorescence in SPCDE has been designed. With modulation of the fluorescence coupling efficiency, a high discrimination ratio up to more than 20-fold has been achieved by enhancing the signal of match and suppressing that of mismatch. E-SPCDE has shown a successful application in DNA sensing, eliminating false positives and false negatives in the detection. E-SPCDE should provide an opportunity to create a new generation of miniaturized high-performance sensing platforms especially in chip-based microarrays and to make the manipulation of the nanometer-scale processes more accessible and detectable.

Surface plasmon-coupled directional emission based on a conformational-switching signaling aptamer.

We have observed highly polarized and directional surface plasmon-coupled emission of a signaling aptamer due to the binding of a target thrombin with the aptamer, which induces conformational switching.