Adaptations to nitrogen availability drive ecological divergence of chemosynthetic symbionts.

Bacterial symbionts, with their shorter generation times and capacity for horizontal gene transfer (HGT), play a critical role in allowing marine organisms to cope with environmental change. The closure of the Isthmus of Panama created distinct environmental conditions in the Tropical Eastern Pacific (TEP) and Caribbean, offering a "natural experiment" for studying how closely related animals evolve and adapt under environmental change. However, the role of bacterial symbionts in this process is often overlooked. We sequenced the genomes of endosymbiotic bacteria in two sets of sister species of chemosymbiotic bivalves from the genera Codakia and Ctena (family Lucinidae) collected on either side of the Isthmus, to investigate how differing environmental conditions have influenced the selection of symbionts and their metabolic capabilities. The lucinid sister species hosted different Candidatus Thiodiazotropha symbionts and only those from the Caribbean had the genetic potential for nitrogen fixation, while those from the TEP did not. Interestingly, this nitrogen-fixing ability did not correspond to symbiont phylogeny, suggesting convergent evolution of nitrogen fixation potential under nutrient-poor conditions. Reconstructing the evolutionary history of the nifHDKT operon by including other lucinid symbiont genomes from around the world further revealed that the last common ancestor (LCA) of Ca. Thiodiazotropha lacked nif genes, and populations in oligotrophic habitats later re-acquired the nif operon through HGT from the Sedimenticola symbiont lineage. Our study suggests that HGT of the nif operon has facilitated niche diversification of the globally distributed Ca. Thiodiazotropha endolucinida species clade. It highlights the importance of nitrogen availability in driving the ecological diversification of chemosynthetic symbiont species and the role that bacterial symbionts may play in the adaptation of marine organisms to changing environmental conditions.

A test of color-based taxonomy in nudibranchs: Molecular phylogeny and species delimitation of the Felimida clenchi (Mollusca: Chromodorididae) species complex.

Traditionally, species identification in nudibranch gastropods relies heavily on body color pattern. The Felimida clenchi species complex, a group of brightly colored Atlantic and Mediterranean species in the family Chromodorididae, has a history of exceptional controversy and discussion among taxonomists. The most widely accepted hypothesis is that the complex includes four species (Felimida clenchi, F. neona, F. binza and F. britoi), each with a characteristic body color pattern. In this study, we investigated the taxonomic value of coloration in the Felimida clenchi complex, using molecular phylogenetics, species-delimitation analyses (ABGD, GMYC, PTP), haplotype-network methods, and the anatomy of the reproductive system. None of our analyses recovered the traditional separation into four species. Our results indicated the existence of three species, a result inconsistent with previous taxonomic hypotheses. We distinguished an undescribed species of Felimida and redefined the concepts of F. clenchi and F. binza, both highly polychromatic species. For the first time, molecular data support the existence of extreme color polymorphism in chromatic nudibranch species, with direct implications for the taxonomy of the group and its diversity. The polychromatism observed in the F. clenchi complex apparently correlates with the regional occurrence of similar color patterns in congeneric species, suggesting different mimicry circles. This may represent a parallel in the marine environment to the mechanisms that play a major role in the diversification of color in terrestrial and fresh-water chromatic groups, such as heliconian butterflies.

Phylogeny of the family Aglajidae (Pilsbry, 1895) (Heterobranchia: Cephalaspidea) inferred from mtDNA and nDNA.

The family Aglajidae includes several species of benthic, carnivorous cephalaspidean sea slugs, which generally lack a radula, have an internal shell, a posterior shield with short to moderate caudal lobes, and sensory cilia present on the head. The present study reports a phylogenetic analysis of the Aglajidae based on the mitochondrial genes 16S and CO1 and the nuclear gene H3, including 160 specimens of 54 species, that confirms the monophyly of Aglajidae as well as most taxonomically established genera, with some exceptions. Although support values are low for some clades, the analysis recovered the following clades within the Aglajidae: Odontoglaja, Nakamigawaia, and Melanochlamys. Chelidonura appears to be paraphyletic and the monophyly of a Chelidonura-Navanax-Aglaja clade is strongly supported in the Bayesian analysis, plus three of the four individual gene trees (COI, COI without 3rd codon positions, 16S and H3). However, the relatively low levels of support in the maximum likelihood analyses prevent us from proposing the synonymization of Navanax and Aglaja with Chelidonura. Melanochlamys is the sister clade of Chelidonura+Aglaja+Navanax. Odontoglaja is basal to the rest of the Aglajidae, confirming previous hypotheses on the loss of the radula in Aglajidae. Nakamigawaia and Melanochlamys are monophyletic, and should be maintained as valid. The monophyly of Philinopsis is strongly supported in the Bayesian analysis and in three of the four individual gene trees. Further research on this group is necessary to further affirm the monophyly of Chelidonura+Aglaja+Navanax and Philinopsis. Based on the results of this phylogenetic analysis, a reclassification of the taxonomy of Aglajidae is probably necessary. Additional genes should provide more information and probably fully resolve this situation. The present molecular study (including ABGD species delineation analyses) suggests the existence of previously undetected species complexes that require additional study to determine the extent of undocumented biodiversity.

A new species of the zephyrinid nudibranch genus Janolus (Mollusca: Nudibranchia) from North America and Costa Rica

A new species of zephyrinid nudibranch of the genus Janolus Bergh 1884 is described from the Pacific Coast of North America and Costa Rica. J. anulatus sp. nov. differs from other species of Janolus by its external and internal morphology. J. anulatus has a brown or white body with pink, white, and brown spots, smooth papillae epithelium at the base and papillated in the distal part, unbranched digestive gland ducts, smooth jaws, and smooth rachidian and lateral teeth. The species is compared with other species from the Panamic Province and the Western Atlantic. A new extension range of J. barbarensis is documented.

Una nueva especie de nudibranquio zefirínido del género Janolus Bergh 1884 es descrita de la costa pacífica de Norte América y Costa Rica. J. anulatus sp. nov. difiere de otras especies de Janolus por su morfología externa e interna. J. anulatus tiene un cuerpo café o blanco con manchas rosadas, blancas o cafés, papila del epitelio lisa en la base y con papilas en la parte distal, ductos de la glándula digestiva no ramificados, mandíbulas lisas y dientes laterales y raquidios lisos. La especie es comparada con otras especies de la Provincia Panámica y el Atlántico Oeste. Una nueva extensión de ámbito de J. barbarensis es documentada.

A new species of the zephyrinid nudibranch genus Janolus (Mollusca: Nudibranchia) from North America and Costa Rica.

A new species of zephyrinid nudibranch of the genus Janolus Bergh 1884 is described from the Pacific Coast of North America and Costa Rica. J. anulatus sp. nov. differs from other species of Janolus by its external and internal morphology. J. anulatus has a brown or white body with pink, white, and brown spots, smooth papillae epithelium at the base and papillated in the distal part, unbranched digestive gland ducts, smooth jaws, and smooth rachidian and lateral teeth. The species is compared with other species from the Panamic Province and the Western Atlantic. A new extension range of J. barbarensis is documented.