Lysine content and its relationship with protein content in indica rice landraces of China.

Lysine is a limiting essential amino acid in rice. This study determined the variation in lysine content and evaluated the relationship between lysine and protein content in indica rice landraces of four provinces (Guangdong, Guangxi, Hunan, and Sichuan) in China by using the data (n = 654) collected from the Chinese Crop Germplasm Information System. Results showed that grain lysine content ranged from 0.25 % to 0.54 %, with 139 landraces having a grain lysine content of more than 0.40 %. Lysine content of protein ranged from 28.4 to 48.1 mg g-1, with 20 landraces having a lysine content of protein of more than 45.0 mg g-1. Guangdong had 5-21 % higher median of grain lysine content and 3-6 % higher median of lysine content of protein than the other three provinces. Lysine content of protein was significantly negatively related to protein content across four provinces.

Texture and digestion properties of hybrid rice: A comparison between two cultivars released 18 years apart.

Field experiments were conducted to compare two hybrid rice cultivars-a recently released high-quality cultivar (Jingliangyou 1468, JLY1468) and a relatively older cultivar (Liangyoupeijiu, LYPJ). Results showed that hardness, springiness, cohesiveness, resilience, and chewiness of cooked milled rice were all lower in JLY1468 than in LYPJ, due to its lower amylose content and altered paste properties of milled rice flour. Active digestion duration of cooked milled rice was 26% shorter and the glucose production rate from starch digestion was 33% faster in JLY1468 compared with LYPJ. Texture and starch digestion properties of cooked milled rice as a factor of temperature during the grain-filling period were different between LYPJ and JLY1468 due to differing amylose contents and gel consistencies of milled rice flour in response to temperature. This study highlights that attention should be paid to potential health risks associated with the development of high-quality hybrid rice cultivars with soft texture.

Correction: Yield performance of early-season rice cultivars grown in the late season of double-season crop production under machine-transplanted conditions.

[This corrects the article DOI: 10.1371/journal.pone.0213075.].

Estimating the expected planting area of double- and single-season rice in the Hunan-Jiangxi region of China by 2030.

The development of double-season rice cropping systems has made a considerable contribution toward achieving rice self-sufficiency in China. However, the planting area for double-season rice has sharply decreased in the Hunan-Jiangxi region (the most important producing region of double-season rice in China) as a result of the conversion from double- to single-season rice cropping systems (referred as the rice "double-to-single" phenomenon). Due to concerns about the negative effect of the "double-to-single" phenomenon on rice self-sufficiency in China, we have estimated the planting area of double- and single-season rice in the Hunan-Jiangxi region that will be needed by 2030 to maintain the contribution to China's rice production, based on the most recent 10 years (2011-2020) of historical data available. The results of our analysis can provide guidance for the government's decision-making when planning the planting area of double- and single-season rice in the Hunan-Jiangxi region.

In vitro testing indicates an accelerated rate of digestion of starch into glucose of cooked rice with the development of low amylose rice in China.

The consumption of low amylose rice has substantially increased in China in recent years. This in vitro study showed that the starch digestion process was distinctly different between a group of commercial rice samples (CR, n = 34) with low amylose content (14-20%) and a group of control rice samples (CK, n = 16) with high amylose content (24-30%). In particular, the CR group had an active digestion duration that was âˆ¼ 90% shorter and a rate of glucose production within the active digestion duration that was nearly 50% higher compared to the CK group. The findings of this study indicate that the development of low amylose rice in China can result in an acceleration in the rate of digestion of starch into glucose of cooked rice, highlighting the need for in vivo assessment of the potential risk of diabetes associated with the consumption of low amylose rice.

Effect of rapeseed straw-derived biochar on soil bacterial community structure at tillering stage of Oryza Sativa.

Numerous studies have reported the dynamics of microbes when biochar was applied, whereas the information on the alterations of bacterial community after application of rapeseed straw-derived biochar is limited. A pot experiment with two rapeseed straw-derived biochar application treatments (with biochar application at the rate of 200 g/pot, C1, and without biochar application, 0 g/pot, C0) was conducted. No significant differences were observed in the number of operational taxonomic units, observed species, Shannon index, Simpson index, Chao1, ACE, and phylogenetic diversity whole tree between the C1 and C0 treatments. Taxonomic analysis at the phylum level showed that the abundances of Bacteroidetes and Parcubacteria were higher in the C1 treatment compared to the C0 treatment, while Acidobacteria, Chloroflexi, Rokubacteria, Berkelbacteria, and Latescibacteria were observed with higher abundance in the C0 treatment compared to the C1 treatment. Taxonomic analysis at the genus level showed that the abundances of Gracilibacter, Lentimicrobium, unidentified Rikenellaceae, Hydrogenophaga, and Bacillus were higher in the C1 treatment compared to the C0 treatment, while Candidatus Solibacter, Candidatus Koribacter, and Lutispora abundances were found to be higher in the C0 treatment compared to the C1 treatment. Obvious clusters were observed between the C1 and C0 treatments in both principal component analysis and nonmetric multidimensional scaling. These results indicate that soil bacterial community was altered after rapeseed straw-derived biochar was applied.

Yield and quality of brown rice noodles processed from early-season rice grains.

Producing rice noodles using early-season rice grains is a way to bypass difficulties in marketing early-season rice that does not meet consumer preference for soft-textured rice. In recent years, brown rice foods including noodles have attracted great attention due to their health and nutritional benefits. This study was conducted to evaluate the yield and quality of brown rice noodles processed from two early-season rice cultivars. Results showed that the yield of brown rice noodles was 12-19% higher than that of white rice noodles. Although the cooked break rate and cooking loss rate were 5-10% higher in brown rice noodles compared to white rice noodles, both were within an acceptable range for brown rice noodles. Cooked brown rice noodles had 21-27% lower hardness and chewiness than cooked white rice noodles, though differences in the elasticity parameters springiness, cohesiveness, and resilience were not significant or were inconsistent between cooked brown and white rice noodles. These results suggest that it is feasible to process early-season rice to produce brown rice noodles of desirable yield and quality.

Comparing texture and digestion properties between white and brown rice of indica cultivars preferred by Chinese consumers.

The consumption of good tasting rice, mainly soft-textured white rice with low amylose content, has substantially increased in China as living standards improve. However, this diet change may increase the risk of developing type II diabetes because the soft-textured white rice is generally less resistant to digestion and has a higher glycemic index. In contrast, intake of brown rice is inversely associated with type II diabetes risk. This study was conducted to test the possibility that brown rice processed from soft-textured cultivars has both acceptable texture and improved health benefits. Texture and digestion properties were compared between white and brown rice of five indica cultivars preferred by Chinese consumers. Mean hardness was 33% higher while mean springiness was 5% lower for cooked brown rice than for cooked white rice. As compared to cooked white rice, cooked brown rice had a 41% longer mean active digestion duration but 31% lower mean glucose production rate and 11% lower mean total glucose production from starch digestion. However, the differences in texture and starch digestion properties between cooked brown and white rice were affected by cultivar identity. Brown rice processed from suitable cultivars with both a relatively thinner bran layer and relatively higher grain amylose content met consumer requirements in terms of acceptable texture and improved health benefits.

Biochar Application Mitigates the Effect of Heat Stress on Rice (Oryza sativa L.) by Regulating the Root-Zone Environment.

Coping with global warming by developing effective agricultural strategies is critical to global rice (Oryza sativa L.) production and food security. In 2020, we observed that the effect of heat stress on rice plants was mitigated by biochar application (40 g kg-1 soil) in a pot experiment with six consecutive days (6-11 days after transplanting) of daily mean temperatures beyond the critical high temperature (33°C) for tillering in rice. To further determine the eco-physiological processes underlying the effect of biochar on resistance to heat stress in rice plants, we compared root-zone soil properties as well as some plant growth and physiological traits related to nitrogen (N) utilization between rice plants grown with and without biochar in the pot experiment. The results showed that the application of biochar improved the root-zone environment of rice plants by reducing soil bulk density, increasing soil organic matter content, and altering soil bacterial community structure by increasing the ratio of Proteobacteria to Acidobacteria, for example. As a consequence, root morphology, architecture, and physiological traits, such as N assimilation and transport proteins, as well as shoot N uptake and utilization (e.g., photosystems I and II proteins), were improved or up-modulated, while the heat-shock and related proteins in roots and leaves were down-modulated in rice plants grown with biochar compared to those without biochar. These results not only expand our understanding of the basic eco-physiological mechanisms controlling increased heat-stress tolerance in rice plants by the application of biochar, but also imply that improving the root-zone environment by optimizing management practices is an effective strategy to mitigate heat stress effects on rice production.

Proteomic profiling reveals differentially expressed proteins associated with amylose accumulation during rice grain filling.

BACKGROUND: Amylose accumulation in rice grains is controlled by genetic and environmental factors. Amylose content is a determinant factor of rice quality in terms of cooking and eating. Great variations in amylose content in indica rice cultivars have been observed. The current study was to identify differentially expressed proteins in starch and sucrose metabolism and glycolysis/gluconeogenesis pathways and their relationships to amylose synthesis using two rice cultivars possess contrasting phenotypes in grain amylose content. RESULTS: Synthesis and accumulation of amylose in rice grains significantly affected the variations between rice cultivars in amylose contents. The high amylose content cultivar has three down-regulated differentially expressed proteins, i.e., LOC_Os01g62420.1, LOC_Os02g36600.1, and LOC_Os08g37380.2 in the glycolysis/gluconeogenesis pathway, which limit the glycolytic process and decrease the glucose-1-phosphate consumption. In the starch and sucrose metabolic pathway, an up-regulated protein, i.e., LOC_Os06g04200.1 and two down-regulated proteins, i.e., LOC_Os05g32710.1 and LOC_Os04g43360.1 were identified (Figure 4). Glucose-1-phosphate is one of the first substrates in starch synthesis and glycolysis that are catalyzed to form adenosine diphosphate glucose (ADPG), then the ADPG is catalyzed by granule-bound starch synthase I (GBSS I) to elongate amylose. CONCLUSIONS: The results indicate that decreasing the consumption of glucose-1-phosphate in the glycolytic process is essential for the formation of ADPG and UDPG, which are substrates for amylose synthesis. In theory, amylose content in rice can be regulated by controlling the fate of glucose-1-phosphate.

Genotypic variation in the grain photosynthetic contribution to grain filling in rice.

Grain filling in rice, a staple cereal crop worldwide, is a critical determinant of grain yield and quality. However, there is little available information on the relationship between grain filling and grain photosynthetic capacity in rice. This study evaluated the genetic diversity among six rice cultivars for their grain filling rate (GR0) and the relationships with the grain chlorophyll contents and grain net photosynthetic rate (PN). Significant variations in GR0, PN, and the chlorophyll contents (a, b, and total) in the grains of the cultivars were observed. Approximately 90 % of the variation in GR0 was explained by the grain PN. General linear model regression revealed significant positive correlations between PN/GR0 and the chlorophyll contents (a, b, and total) in the grains. There was also a significant positive correlation between PN and GR0. These positive correlations suggest a direct positive relationship between the grain filling rate and grain chlorophyll contents, which is indicative of the high photosynthetic capacity of the grains during the early grain filling period. These results suggest that the grain chlorophyll contents could be used as a molecular marker in marker-assisted breeding programs for rice cultivars with high grain net photosynthetic capacity during the early period of grain filling to improve grain yield.

Soil bacterial communities in three rice-based cropping systems differing in productivity.

Soil microorganisms play an important role in determining productivity of agro-ecosystems. This study was conducted to compare diversity, richness, and structure (relative abundance at the phylum level) of soil bacterial communities among three rice-based cropping systems, namely, a winter fallow-rice-rice (FRR), green manure (Chinese milk vetch)-rice-rice (MRR), and oilseed rape-rice-rice (ORR), in which MRR and ORR had significantly higher productivity than FRR. A 16S rRNA gene sequence analysis showed that no significant differences were observed in diversity and richness indices (observed species, Shannon, Simpson, Chao1, abundance-based coverage estimators, and phylogeny-based metrics) of soil bacterial communities among the three cropping systems. However, relative abundances of dominant phyla in soil bacterial communities, including Proteobacteria, Acidobacteria, Nitrospirae, Gemmatimonadetes, and Verrucomicrobia, were significantly different among the three cropping systems. In particular, a significant reduction in the relative abundance of Nitrospirae was observed in both MRR and ORR compared with FRR. These results indicate that bacterial community structure was affected by cropping systems in the tested paddy soils. Based on the results of our studies and existing knowledge bases, we speculate that benefits to rice yield may be obtained by reducing the relative abundance of Nitrospirae and increasing the ratio of abundances of Proteobacteria/Acidobacteria in paddy soils.

Primary-tiller panicle number is critical to achieving high grain yields in machine-transplanted hybrid rice.

The development of machine-transplanted hybrid rice is a feasible approach to meet the needs of both high grain yield and high labor efficiency in China, but limited information is available on the critical plant traits associated with high grain yields in machine-transplanted hybrid rice. This study was carried out to identify which type of culms (i.e., main stems and primary and secondary tillers) and which yield components of this culm are critical to achieving high grain yields in machine-transplanted hybrid rice. Field experiments were conducted with two hybrid rice cultivars grown under two densities of machine transplanting in two years. Results showed that total grain yield of main stems and primary and secondary tillers was not significantly affected by cultivar but was significantly affected by density and year. Averaged across cultivars, densities, and years, main stems and primary and secondary tillers contributed about 15%, 50%, and 35% to total grain yield, respectively. Total grain yield was not significantly related to grain yields of main stems and secondary tillers but was positively and significantly related to grain yield of primary tillers. Approximately 85% of the variation in total grain yield was explained by grain yield of primary tillers, which was positively and significantly related to primary-tiller panicles per m2 but not to spikelets per panicle, spikelet filling percentage, or grain weight of primary tillers. Based on these results, it is concluded that primary-tiller panicle number is essential for achieving high grain yields in machine-transplanted hybrid rice.

Grain filling of early-season rice cultivars grown under mechanical transplanting.

High yields of mechanized intensive rice-based cropping systems, e.g. double-season cropping using early- and late-season rice, are important to ensure national food security in China. However, few studies addressing the relationship between grain weight and grain yield of early-season rice under machine-transplanted conditions. A field experiment was conducted to determine the critical grain-filling characteristics and related physiological aspects that contribute to high grain weight in machine-transplanted early-season rice. The results showed that grain yield was significantly positively correlated with grain weight but not with panicles per m2, spikelets per panicle, and spikelet-filling percentage. Furthermore, this study demonstrated that there was a significant positive correlation between grain weight and mean grain-filling rate, which was significantly positively correlated with harvest index and grain cytokinin content. These results indicate that high grain-filling rate driven by good transport of assimilates to grains and strong grain sink strength is responsible for high grain weight in machine-transplanted early-season rice.

Contrasting change in biomass translocation with environment in two rice hybrids.

Translocation of biomass produced during pre-heading to grains is a determinant of grain yield, but also plays an important role in adaptation to unfavorable environments during post-heading in rice. In this study, field experiments were conducted to determine the critical factors that regulate biomass translocation in rice. Biomass translocation and production characteristics of two rice hybrids (Guiliangyou 2 and Y-liangyou 1) were compared between two site-year environments (Naning-2014 and Yongan-2018). Results showed that biomass translocation parameters (biomass translocation amount and rate and contribution of biomass translocation to filled grain weight) and ratio of biomass production during pre-heading to post-heading (BPpre/BPpost ratio) decreased in Guiliangyou 2 but increased in Y-liangyou 1 with the environment change from Nanning-2014 to Yongan-2018. The decreased BPpre/BPpost in Guiliangyou 2 was attributable to increased biomass production during post-heading (BPpost), while the increased BPpre/BPpost ratio in Y-liangyou 1 was due to increased biomass production during pre-heading (BPpre). Higher cumulative incident solar radiation and larger diurnal temperature variation were responsible for the increased BPpost in Guiliangyou 2 and the increased BPpre in Y-liangyou 1 grown in Yongan in 2018 compared to in Nanning in 2014. The results of this study indicate that changes in biomass translocation and production with environment (climate) in rice are dependent on genotype and that the BPpre/BPpost ratio is an important factor regulating biomass translocation in rice.

Quantifying accumulation characteristics of glutelin and prolamin in rice grains.

Glutelin and prolamin are the two major proteins in rice grains. Grain content of glutelin is considerably higher than that of prolamin in rice, but there is limited information on the factors determining the different grain contents of glutelin and prolamin. To address this knowledge gap, the present study compared final weight per grain and accumulation characteristics of glutelin and prolamin in four rice cultivars. Results showed that final glutelin weight per grain was 3.24-3.95 times higher than final prolamin weight per grain. Glutelin and prolamin accumulation processes were well fitted by the logistic equation. The initial, maximum, and mean accumulation rates of glutelin were 1.69-4.67 times higher than those of prolamin. The active accumulation duration of glutelin was 2.9-5.1 d longer than that of prolamin. These results indicate that both higher accumulation rate and longer active accumulation duration are responsible for the higher final weight per grain of glutelin compared to prolamin in rice.

Yield performance of early-season rice cultivars grown in the late season of double-season crop production under machine-transplanted conditions.

In order to solve the problem of labor shortage in double-season rice production areas, machine transplanting, as opposed to manual transplanting, has become the more popular alternative method in rice cultivation. However, the most existing late rice cultivars are not suitable for machine double-season rice cultivation due to their long duration of growth. Therefore, based on the previous studies we chose early season rice cultivars to meet the needs of machine double-season rice cultivation. In this study, field experiments were conducted during the late season in 2015 and 2016 in Liuyang County, Hunan Province, China. Grain yield and yield-related traits were compared among eight early-season cultivars (Liangyou 6, Lingliangyou 211, Lingliangyou 268, Zhuliangyou 819, Xiangzaoxian 32, Xiangzaoxian 42, Zhongjiazao 17, and Zhongzao 39) in 2015 and four cultivars (Lingliangyou 268, Zhuliangyou 819, Zhongjiazao 17, and Zhongzao 39) in 2016, selected from the highest yielding cultivars grown in 2015. Lingliangyou 268 produced 8-44% higher grain yield than did the other cultivars except Zhongjiazao17 in 2015. This higher grain yield was driven by grain weight and aboveground biomass. The greater aboveground biomass in Lingliangyou 268 was mainly attributed to higher apparent radiation use efficiency (aboveground biomass/incident solar radiation). Our study suggests that improvement in grain weight and apparent radiation use efficiency were critical to the high grain yield of early-season rice cultivars grown in late season under machine transplanting conditions.

Urea application promotes amino acid metabolism and membrane lipid peroxidation in Azolla.

A pot experiment was conducted to evaluate the effect of urea on nitrogen metabolism and membrane lipid peroxidation in Azolla pinnata. Compared to controls, the application of urea to A. pinnata resulted in a 44% decrease in nitrogenase activity, no significant change in glutamine synthetase activity, 660% higher glutamic-pyruvic transaminase, 39% increase in free amino acid levels, 22% increase in malondialdehyde levels, 21% increase in Na+/K+- levels, 16% increase in Ca2+/Mg2+-ATPase levels, and 11% decrease in superoxide dismutase activity. In terms of H2O2 detoxifying enzymes, peroxidase activity did not change and catalase activity increased by 64% in urea-treated A. pinnata. These findings suggest that urea application promotes amino acid metabolism and membrane lipid peroxidation in A. pinnata.

Rice Yield and the Fate of Fertilizer Nitrogen as Affected by Addition of Earthworm Casts Collected from Oilseed Rape Fields: A Pot Experiment.

The mechanism associated with improvement of soil nutritional status by oilseed rape crop, leading to better performance of rice crop, in rice-oilseed rape cropping systems is little known. The present study was aimed to test the hypothesis that earthworm casts produced during oilseed rape-growing season have positive effects on grain yield and fertilizer nitrogen (N) utilization in the subsequent flooded rice crop. A 15N-tracing pot experiment was conducted to determine the effects of earthworm casts collected from oilseed rape fields on yield attributes in rice and the fate of fertilizer N. Soil treated with earthworm casts (soil: earthworm casts = 4: 1, w/w) (EC1) produced 39% higher grain yield than soil only (EC0). EC1 had 18% more panicle number and 10% higher spikelet filling percentage than EC0. Aboveground biomass and harvest index were higher in EC1 than in EC0 by 20% and 15%, respectively. SPAD values in flag leaves were 10% and 22% higher under EC1 than EC0 at 15 and 20 days after heading, respectively. EC1 had 19% higher total N uptake and 18% higher physiological N-use efficiency than EC0. These positive effects of earthworm casts on yield attributes offset negative effects of decreasing N rate from 0.74 g pot-1 (equivalent to the recommended field rate of 150 kg ha-1) to 0.44 g pot-1 (equivalent to 60% of the recommended rate). Fertilizer N retention rate was 7% higher while fertilizer N loss rate was 6% lower in EC1 than in EC0. Our study suggests that earthworm casts produced during oilseed rape-growing season are expected to have the following benefits on the subsequent flooded rice system: (1) improving growth and physiological processes in rice plants and consequently increasing rice grain yield, and (2) increasing fertilizer N retention rate and hence decreasing fertilizer N loss rate and reducing environmental risk.

Temperature-Related Yield Constraints of Early-Rice in South China: A Cross-Location Analysis.

Warm temperature during post-heading is generally hypothesized to be the critical factor limiting grain yield of early-rice in South China. However, there is no direct evidence to confirm this hypothesis in the field. This study was conducted to determine the temperature-related yield constraints of early-rice in South China. Field experiments were carried out in Huaiji (a location in South China) and Changsha (a location in the Yangtze River basin) in 2011-2013. In each year, two rice cultivars were grown in early-rice growing season in Huaiji and in single-rice growing season in Changsha. Huaiji had higher average daily maximum temperature during post-heading than Changsha. The higher temperature during post-heading induced early plant senescence (slower crop growth rate and shorter grain filling duration), but grain weight did not reduce because it was compensated for by increased translocation of pre-heading biomass. The higher temperature during post-heading also did not cause a reduction in grain filling percentage. Huaiji had lower temperature during pre-heading than Changsha, which to some extent resulted in slower crop growth rate and consequently lower biomass production and smaller sink size in Huaiji than in Changsha. As a result, grain yield was about 30% lower in Huaiji than in Changsha. Our results indicate that grain yield of early-rice in South China is limited not by warm temperature during post-heading but partially by cool temperature during pre-heading, and suggest that enhancing sink size and meanwhile maintaining good translocation of pre-heading biomass may be an effective way to achieve high yield for early-rice in South China.