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1.
Arch Bronconeumol ; 38(4): 160-5, 2002 Apr.
Artigo em Espanhol | MEDLINE | ID: mdl-11953267

RESUMO

OBJECTIVE: To investigate the absolute and relative frequency of mechanical ventilation in the management of patients on a respiratory medicine ward between 1994 and 2000. To describe reasons for admission, mean hospital stay and outcomes. SETTING: A tertiary-care university hospital. METHODS: Observational, descriptive study of a case series. RESULTS: During the study period, 257 admissions involved mechanical ventilation of 132 patients. During that time, there was a progressive increase in the total number of ventilated patients as well as in the relative frequency, such that ventilated patients eventually accounted for 6.1% of all admissions for respiratory care in 2000. Nearly 80% of admissions were related to the service's home mechanical ventilation program, either to initiate and adapt ventilation for new patients or to treat exacerbations or diagnose and treat other medical or surgical problems in already-ventilated patients. Patients transferred from the intensive care unit (ICU) because of weaning difficulties (median ventilation, 31 days) had the highest mean stay. Nine of the 132 patients had to be transferred to the ICU and 18 died while hospitalized (7% of admissions and 13.6% of patients). The patients who died were those who were more acutely and severely ill (acute exacerbation in home-ventilated patients, patients with acute respiratory failure treated initially with non-invasive ventilation and patients transferred from the ICU due to weaning difficulties). CONCLUSIONS: Admissions requiring mechanical ventilation have increased and most are related to the home mechanical ventilation program. The mean stay and the mortality rate were related to the reason for admission.


Assuntos
Hospitais Universitários/estatística & dados numéricos , Respiração Artificial/estatística & dados numéricos , Adolescente , Adulto , Idoso , Idoso de 80 Anos ou mais , Feminino , Serviços de Assistência Domiciliar/estatística & dados numéricos , Humanos , Unidades de Terapia Intensiva/estatística & dados numéricos , Masculino , Pessoa de Meia-Idade , Estudos Retrospectivos , Desmame do Respirador/estatística & dados numéricos
2.
Arch. bronconeumol. (Ed. impr.) ; 38(4): 160-165, abr. 2002.
Artigo em Es | IBECS | ID: ibc-11995

RESUMO

OBJETIVO: Conocer la frecuencia absoluta y relativa de pacientes que han utilizado la ventilación mecánica como parte de su tratamiento en una sala de hospitalización neumológica en el período 1994-2000, describir las causas que han motivado la indicación y analizar su estancia media y sus resultados. ÁMBITO: Hospital terciario universitario. PACIENTES Y MÉTODOS: Estudio observacional descriptivo de serie de casos. RESULTADOS: En el período de estudio hubo 257 ingresos hospitalarios con ventilación mecánica en 132 pacientes. Durante ese tiempo se produjo un incremento progresivo en el número anual absoluto y relativo de pacientes que, en el año 2000, representó el 6,1 por ciento del total de las hospitalizaciones en la planta de neumología. Casi el 80 por ciento de los ingresos estaban relacionadas con el programa de ventilación mecánica domiciliaria, bien para inicio programado de adaptación a la misma, o estando en tratamiento previo con ella por agudización respiratoria o para el diagnóstico y tratamiento de otros problemas médicos o quirúrgicos. El grupo de mayor estancia media fue el de los pacientes trasladados desde la unidad de cuidados intensivos por ventilación mecánica prolongada (mediana de 31 días). Del total de pacientes (n = 132), nueve fueron trasladados a la unidad de cuidados intensivos y 18 fallecieron (el 7 por ciento del total de las hospitalizaciones y 13,6 por ciento de los pacientes).La mortalidad se concentró en los grupos con pacientes más agudos y graves: pacientes con ventilación mecánica domiciliaria previa y agudización respiratoria, pacientes con ventilación mecánica no invasiva para tratamiento de la insuficiencia respiratoria aguda y pacientes trasladados desde la UCI por ventilación mecánica prolongada y dificultades en la desconexión. CONCLUSIONES: Se ha producido un incremento progresivo del número de pacientes hospitalizados con ventilación mecánica, en la mayor parte de los casos relacionados con el programa de ventilación mecánica domiciliaria. La estancia media y la mortalidad dependieron del motivo de la ventilación mecánica (AU)


Assuntos
Pessoa de Meia-Idade , Adolescente , Adulto , Idoso , Idoso de 80 Anos ou mais , Masculino , Feminino , Humanos , Desmame do Respirador , Respiração Artificial , Estudos Retrospectivos , Hospitais Universitários , Serviços de Assistência Domiciliar , Unidades de Terapia Intensiva
3.
Virology ; 283(1): 78-83, 2001 Apr 25.
Artigo em Inglês | MEDLINE | ID: mdl-11312664

RESUMO

Human immunodeficiency virus type-1 (HIV-1) Vpr is a virion-associated protein implicated to have a role in AIDS pathogenesis. In regard to the amount of Vpr incorporated into virus particles, the published data vary widely. To address this, we quantitated Vpr in virus particles derived from diverse sources that are used to evaluate the biological effect of Vpr. Virus particles from infected cells showed only a small amount of Vpr. Interestingly, virus particles from cells cotransfected with HIV-1 proviral DNA lacking Vpr coding sequences (NLDeltaVpr) and a Vpr expression plasmid showed a drastic increase (29.4-fold) in the incorporation of Vpr. Furthermore, cotransfection involving NLDeltaVpr and different concentrations of Vpr expression plasmid resulted in virus particles containing Vpr in proportion to the Vpr expression plasmid used. The differences in virus particles with respect to Vpr as revealed by these studies should be taken into account in assessing the effect of Vpr.


Assuntos
Produtos do Gene vpr/metabolismo , Infecções por HIV/virologia , HIV-1/fisiologia , Transfecção , Vírion/metabolismo , Linhagem Celular , DNA Viral/genética , Produtos do Gene vpr/genética , HIV-1/genética , Humanos , Immunoblotting , Provírus/genética , Produtos do Gene vpr do Vírus da Imunodeficiência Humana
4.
DNA Cell Biol ; 20(12): 797-805, 2001 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-11879573

RESUMO

Current treatment of HIV-1-infected individuals involves the administration of several drugs, all of which target either the reverse transcriptase or the protease activity of the virus. Unfortunately, the benefits of such treatments are compromised by the emergence of viruses exhibiting resistance to the drugs. This situation warrants new approaches for interfering with virus replication. Considering the activation of protease in the virus particles, a novel strategy to inhibit HIV-1 replication was tested targeting the dimerization domain of the protease. To test this idea, we have selected four residues from the C terminus of HIV-1 protease that map to the dimer interface region of the enzyme. We have exploited Vpr to display the peptides in the virus particles. The chimeric Vpr exhibited expression and virion incorporation similar to wildtype Vpr. The virus derived from the HIV-1 proviral DNA containing chimeric Vpr sequences registered a reduced level of replication in CEM and CEM X 174 cells in comparison with viruses containing wildtype Vpr. Similar results were observed in a single-round replication assay. These results suggest that the intravirion display of peptides targeting viral proteins is a powerful approach for developing antiviral agents and for dissecting the dynamic interactions between structural proteins during virus assembly and disassembly.


Assuntos
Fármacos Anti-HIV/farmacologia , Produtos do Gene vpr/farmacologia , Protease de HIV/metabolismo , HIV-1/fisiologia , Proteínas Recombinantes de Fusão/farmacologia , Replicação Viral/efeitos dos fármacos , Sequência de Bases , Linhagem Celular , Produtos do Gene vpr/química , Humanos , Dados de Sequência Molecular , Biossíntese de Proteínas , Ensaio de Radioimunoprecipitação , Proteínas Recombinantes de Fusão/química , Proteínas Recombinantes/farmacologia , Produtos do Gene vpr do Vírus da Imunodeficiência Humana
5.
J Virol ; 74(22): 10650-7, 2000 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-11044109

RESUMO

Vpr, encoded by the human immunodeficiency virus type 1 genome, contains 96 amino acids and is a multifunctional protein with features which include cell cycle arrest at G(2), nuclear localization, participation in transport of the preintegration complex, cation channel activity, oligomerization, and interaction with cellular proteins, in addition to its incorporation into the virus particles. Recently, structural studies based on nuclear magnetic resonance and circular dichroism spectroscopy showed that Vpr contains a helix (HI)-turn-helix (HII) core at the amino terminus and an amphipathic helix (HIII) in the middle region. Though the importance of helical domains HI and HIII has been defined with respect to Vpr functions, the role of helical domain HII is not known. To address this issue, we constructed a series of mutants in which the HII domain was altered by deletion, insertion, and/or substitution mutagenesis. To enable the detection of Vpr, the sequence corresponding to the Flag epitope (DYKDDDDK) was added, in frame, to the Vpr coding sequences. Mutants, expressed through the in vitro transcription/translation system and in cells, showed an altered migration corresponding to deletions in Vpr. Substitution mutational analysis of residues in HII showed reduced stability for VprW38S-FL, VprL42G-FL, and VprH45W-FL. An assay involving cotransfection of NLDeltaVpr proviral DNA and a Vpr expression plasmid was employed to analyze the virion incorporation property of Vpr. Mutant Vpr containing deletions and specific substitutions (VprW38S-FL, VprL39G-FL, VprL42G-FL, VprG43P-FL, and VprI46G-FL) exhibited a negative virion incorporation phenotype. Further, mutant Vpr-FL containing deletions also failed to associate with wild-type Vpr, indicating a possible defect in the oligomerization feature of Vpr. Subcellular localization studies indicated that mutants VprDelta35-50-H-FL, VprR36W-FL, VprL39G-FL, and VprI46G-FL exhibited both cytoplasmic and nuclear localization, unlike other mutants and control Vpr-FL. While wild-type Vpr registered cell cycle arrest at G(2), mutant Vpr showed an intermediary effect with the exception of VprDelta35-50 and VprDelta35-50-H. These results suggest that residues in the HII domain are essential for Vpr functions.


Assuntos
Produtos do Gene vpr/química , Produtos do Gene vpr/metabolismo , HIV-1/metabolismo , Sequência de Aminoácidos , Ciclo Celular/fisiologia , Produtos do Gene vpr/genética , HIV-1/química , HIV-1/genética , Células HeLa , Humanos , Mutação , Estrutura Terciária de Proteína , Relação Estrutura-Atividade , Frações Subcelulares/metabolismo , Transfecção , Vírion/metabolismo , Produtos do Gene vpr do Vírus da Imunodeficiência Humana
6.
Protein Eng ; 13(6): 431-6, 2000 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-10877854

RESUMO

The processing of precursor proteins (Gag and Gag-pol) by the viral protease is absolutely required in order to generate infectious particles. This prompted us to consider novel strategies that target viral maturation. Towards this end, we have engineered an HIV-1 virion associated protein, Vpr, to contain protease cleavage signal sequences from Gag and Gag-pol precursor proteins. We previously reported that virus particles derived from HIV-1 proviral DNA, encoding chimeric Vpr, showed a lack of infectivity, depending on the fusion partner. As an extension of that work, the potential of chimeric Vpr as a substrate for HIV-1 protease was tested utilizing an epitope-based assay. Chimeric Vpr molecules were modified such that the Flag epitope is removed following cleavage, thus allowing us to determine the efficiency of protease cleavage. Following incubation with the protease, the resultant products were analyzed by radioimmunoprecipitation using antibodies directed against the Flag epitope. Densitometric analysis of the autoradiograms showed processing to be both rapid and specific. Further, the analysis of virus particles containing chimeric Vpr by immunoblot showed reactivities to antibodies against the Flag epitope similar to the data observed in vitro. These results suggest that the pseudosubstrate approach may provide another avenue for developing antiviral agents.


Assuntos
Antivirais/farmacologia , Produtos do Gene vpr/biossíntese , Produtos do Gene vpr/farmacologia , Protease de HIV/metabolismo , HIV-1/efeitos dos fármacos , Replicação Viral/efeitos dos fármacos , Compostos de Aminobifenil/farmacologia , Densitometria , Desenho de Fármacos , Epitopos/genética , Epitopos/metabolismo , Produtos do Gene gag/genética , Produtos do Gene vpr/genética , HIV-1/genética , HIV-1/crescimento & desenvolvimento , HIV-1/metabolismo , Immunoblotting , Oligopeptídeos , Peptídeos/genética , Plasmídeos/genética , Precursores de Proteínas/genética , Ensaio de Radioimunoprecipitação , Proteínas Recombinantes de Fusão/biossíntese , Proteínas Recombinantes de Fusão/genética , Proteínas Recombinantes de Fusão/farmacologia , Produtos do Gene gag do Vírus da Imunodeficiência Humana , Produtos do Gene pol do Vírus da Imunodeficiência Humana , Produtos do Gene vpr do Vírus da Imunodeficiência Humana
7.
Virology ; 268(2): 364-71, 2000 Mar 15.
Artigo em Inglês | MEDLINE | ID: mdl-10704344

RESUMO

We used an epitope-tagging approach to determine the ratio of Gag (structural) to Vpr (nonstructural) in the virus particles directed by human immunodeficiency virus type 1. For this purpose, chimeric Gag and Vpr expression plasmids were constructed with the Flag epitope (DYKDDDDK), and the sequences corresponding to the chimeric protein were introduced into human immunodeficiency virus type 1 proviral DNA (NL4-3) to determine the ratio in the virus particles when these proteins are expressed in cis. In addition, NL4-3 DNA was modified to disrupt Vpr synthesis to determine the extent of incorporation of Vpr-FL when it is expressed in trans through a heterologous promoter. The analysis of virus particles generated by transfection of proviral DNA into RD cells indicated that (1) the ratio of Gag to Vpr in virus particles, when Vpr-FL is expressed in cis (in the context of proviral DNA), is in the range of 150-200:1 (14-18 molecules of Vpr per virion) and (2) the expression of Vpr-FL in trans showed efficient incorporation with a Gag to Vpr ratio of 5-7:1 (392-550 molecules of Vpr). These results suggest that the presence of the same epitope on different viral proteins may provide an accurate comparison of these proteins in the virus particles.


Assuntos
Epitopos/metabolismo , Produtos do Gene vpr/metabolismo , Proteína do Núcleo p24 do HIV/metabolismo , Proteínas não Estruturais Virais/metabolismo , Proteínas Estruturais Virais/metabolismo , Vírion/metabolismo , Mapeamento de Epitopos/métodos , Produtos do Gene vpr/biossíntese , Produtos do Gene vpr/genética , Produtos do Gene vpr/imunologia , Proteína do Núcleo p24 do HIV/biossíntese , Proteína do Núcleo p24 do HIV/genética , Proteína do Núcleo p24 do HIV/imunologia , Humanos , Oligopeptídeos , Peptídeos/genética , Peptídeos/imunologia , Peptídeos/metabolismo , Plasmídeos/síntese química , Plasmídeos/imunologia , Células Tumorais Cultivadas , Proteínas não Estruturais Virais/biossíntese , Proteínas não Estruturais Virais/genética , Proteínas não Estruturais Virais/imunologia , Proteínas Estruturais Virais/biossíntese , Proteínas Estruturais Virais/genética , Proteínas Estruturais Virais/imunologia , Vírion/genética
8.
FEBS Lett ; 469(2-3): 191-5, 2000 Mar 10.
Artigo em Inglês | MEDLINE | ID: mdl-10713269

RESUMO

To examine the factors that control the extent of incorporation of Vpr into the virus particles, we utilized an epitope-tagging approach with Flag (FL) as the epitope for quantitation. We generated expression plasmids containing Vpr-FL and Vpr E21,24P-FL and also HIV-1 proviral DNA containing Vpr-FL (NL-Vpr-FL). Immunoblot analysis using Flag antibodies revealed that virus particles derived from co-transfection of NL-Vpr-FL and Vpr-FL showed an enhanced level of Vpr-FL in comparison to NL-Vpr-FL derived virus. These results suggest that the amount of incorporation of Vpr into the virus particles is flexible and may be modulated by its expression level in cells.


Assuntos
Produtos do Gene vpr/metabolismo , HIV-1/fisiologia , Linhagem Celular , Epitopos , Produtos do Gene vpr/genética , HIV-1/metabolismo , Humanos , Immunoblotting , Testes de Precipitina , Biossíntese de Proteínas , Provírus/genética , Proteínas Recombinantes de Fusão/genética , Proteínas Recombinantes de Fusão/metabolismo , Transcrição Gênica , Produtos do Gene vpr do Vírus da Imunodeficiência Humana
9.
Proc Natl Acad Sci U S A ; 96(6): 2704-9, 1999 Mar 16.
Artigo em Inglês | MEDLINE | ID: mdl-10077575

RESUMO

Genetic and biochemical analyses of the Gag protein of HIV-1 indicate a crucial role for this protein in several functions related to viral replication, including viral assembly. It has been suggested that Gag may fulfill some of the functions by recruiting host cellular protein(s). In our effort to identify structural and functional homologies between Gag and cellular cytoskeletal and secretory proteins involved in transport, we observed that HIV-1 Gag contains a unique PGQM motif in the capsid region. This motif was initially noted in the regulatory domain of synexin the membrane fusion protein of Xenopus laevis. To evaluate the functional significance of the highly conserved PGQM motif, we introduced alanine (A) in place of individual residues of the PGQM and deleted the motif altogether in a Gag expression plasmid and in an HIV-1 proviral DNA. The proviral DNA containing mutations in the PGQM motif showed altered expression, assembly, and release of viral particles in comparison to parental (NL4-3) DNA. When tested in multiple- and single-round replication assays, the mutant viruses exhibited distinct replication phenotypes; the viruses containing the A for the G and Q residues failed to replicate, whereas A in place of the P and M residues did not inhibit viral replication. Deletion of the tetrapeptide also resulted in the inhibition of replication. These results suggest that the PGQM motif may play an important role in the infection process of HIV-1 by facilitating protein-protein interactions between viral and/or viral and cellular proteins.


Assuntos
Anexina A7/genética , Produtos do Gene gag/genética , HIV-1/fisiologia , Replicação Viral/genética , Animais , Humanos , Mutação , Análise de Sequência , Xenopus laevis
10.
Proc Natl Acad Sci U S A ; 94(7): 3346-51, 1997 Apr 01.
Artigo em Inglês | MEDLINE | ID: mdl-9096396

RESUMO

Effective antiviral agents will be of great value in controlling virus replication and delaying the onset of HIV-1-related disease symptoms. Current therapy involves the use of antiviral agents that target the enzymatic functions of the virus, resulting in the emergence of resistant viruses to these agents, thus lowering their effectiveness. To overcome this problem, we have considered the idea of developing novel agents from within HIV-1 as inhibitors of virus replication. The specificity of the Vpr protein for the HIV-1 virus particle makes it an attractive molecule for the development of antiviral agents targeting the events associated with virus maturation. We have generated chimeric Vpr proteins containing HIV-1-specific sequences added to the C terminus of Vpr. These sequences correspond to nine cleavage sites of the Gag and Gag-Pol precursors of HIV-1. The chimeric Vpr constructs were introduced into HIV-1 proviral DNA to assess their effect on virus infectivity using single- and multiple-round replication assays. The virus particles generated exhibited a variable replication pattern depending on the protease cleavage site used as a fusion partner. Interestingly, the chimeric Vpr containing the cleavage sequences from the junction of p24 and p2, 24/2, completely abolished virus infectivity. These results show that chimeric proteins generated from within HIV-1 have the ability to suppress HIV-1 replication and make ideal agents for gene therapy or intracellular immunization to treat HIV-1 infection.


Assuntos
Fármacos Anti-HIV/farmacologia , Produtos do Gene vpr/farmacologia , Protease de HIV/metabolismo , HIV-1/enzimologia , Sequência de Bases , Linhagem Celular , Produtos do Gene vpr/química , HIV-1/fisiologia , Humanos , Hidrólise , Dados de Sequência Molecular , Sinais Direcionadores de Proteínas/metabolismo , Proteínas Recombinantes de Fusão/química , Proteínas Recombinantes de Fusão/farmacologia , Replicação Viral , Produtos do Gene vpr do Vírus da Imunodeficiência Humana
11.
DNA Cell Biol ; 11(5): 369-76, 1992 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-1351391

RESUMO

DNA sequence analyses of several human immunodeficiency virus (HIV) isolates revealed extensive genetic diversity in the env gene and, to a lesser extent, in other regions of the viral genome, including the long terminal repeat (LTR) sequences. Since the LTRs contain elements responsible for the control of transcription, the difference in the LTR region may play a crucial role in the overall replication rate of HIV. To evaluate the role of the LTR, we have constructed a number of infectious hybrid HIV molecular clones containing LTRs from different proviral DNAs linked to the body of the viral genome, and analyzed them in a transient expression system. Both parental and hybrid proviral DNAs were transfected into human rhabdomyosarcoma cells for monitoring virus production. Proviral DNA designate pZ6 (HIVZr6) showed a high level of virus in the medium of the transfected culture in comparison to the pHXB2 (HIVHTLV-III) and pARV (HIVSF-2) DNAs. Hybrid proviral DNAs containing viral genes from pZ6, linked to LTR U3 sequences of pHXB2 and pARV at the 5' end, showed virus production similar to the levels observed with pZ6. These results indicate that the extent of virus production does not correlate with the LTR U3 sequences, and may involve other regions of the viral genome.


Assuntos
Regulação Viral da Expressão Gênica , Repetição Terminal Longa de HIV , HIV-1/genética , Replicação Viral , Sequência de Bases , Linfócitos T CD4-Positivos/microbiologia , Células Cultivadas , Clonagem Molecular , Humanos , Técnicas In Vitro , Dados de Sequência Molecular , Provírus/genética , Relação Estrutura-Atividade
12.
Pathobiology ; 60(4): 234-45, 1992.
Artigo em Inglês | MEDLINE | ID: mdl-1388721

RESUMO

Human immunodeficiency viruses (HIVs) isolated from infected individuals show genetic and biological diversity. To delineate the genetic determinants underlying specific biological characteristics such as rate of replication and cellular tropism, generation of hybrid HIV using viruses which exhibit distinct biological feature is essential. We have used three different infectious HIV proviral DNAs, designated pZ6, pHXB2 and pARV, derived from HIVZr6, HIVHTLV-IIIB and HIVSF-2 strains, respectively, to construct hybrid HIV. Proviral DNAs differed in their ability to direct the synthesis of viral particles upon transfection into cells and the viruses derived from the molecular clones exhibited different cellular tropism. Three different methods were utilized to generate hybrid HIV, including construction of hybrid proviral DNA using molecular techniques, intracellular ligation of viral DNA fragments and the homologous recombination approach. The chimeric proviral DNAs with exchanges involving only the long terminal repeat (LTR) region indicated that LTR does not exert influence on the overall level of virus production despite extensive differences in the U3 region of the LTR. Regarding the cellular tropism of HIV, the virus derived from pHXB2 productively infected CEMx174 cells. On the other hand, pARV-derived virus did not show productive infection of CEMx174 cells. The hybrid HIV containing the 3'-end of the genome from pARV and the 5'-end of the genome from pHXB2 was effective in infecting CEMx174 cells. However, the converse hybrid containing the 5'-pARV and the 3'-pHXB2 was not effective in infecting CEMx174 cells. These results suggest that differences in the genes outside of env and nef may play a role in the ability of virus to infect a certain cell type.


Assuntos
DNA Viral/genética , HIV-1/genética , Sequência de Bases , Linhagem Celular , Repetição Terminal Longa de HIV/genética , Humanos , Cinética , Dados de Sequência Molecular , Provírus/genética , Vírus Reordenados/genética , Transfecção/genética , Replicação Viral/genética
13.
J Virol ; 65(9): 4847-52, 1991 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-1678438

RESUMO

Human immunodeficiency viruses (HIV) isolated from infected individuals show tremendous genetic and biologic diversity. To delineate the genetic determinants underlying specific biologic characteristics, such as rate of replication, cytopathic effects, and ability to infect macrophages and T4 lymphoid cells, generation of hybrid HIV using viruses which exhibit distinct biologic features is essential. To develop methods for generating hybrid HIV, we constructed truncated HIV proviral DNA plasmids. Upon digestion with restriction enzymes, these plasmid DNAs were cotransfected into human rhabdomyosarcoma cells to generate hybrid HIV. The hybrid HIVs derived by this method were infectious upon transmission to both phytohemagglutinin-stimulated peripheral blood lymphocytes and established human leukemic T-cell lines. The virus derived from molecular clone pHXB2 (HIVHTLV-III) productively infected CEMx174 cells. On the other hand, molecular clone pARV (HIVSF2)-derived virus did not show productive infection of CEMx174 cells when used as a cell-free virus. The hybrid HIV containing the 3' end of the genome from pARV and the 5' end of the genome from pHXB2 was effective in infecting CEMx174 cells, but the converse hybrid containing 5' pARV and 3' pHXB2 was not effective in infecting CEMx174 cells. These results suggest that differences in the genes outside of env and nef play a role in the ability of the virus to infect a certain cell type. The intracellular ligation method should be useful in the analysis of related and unrelated HIV-1 isolates with common restriction enzyme cleavage sites.


Assuntos
Linfócitos T CD4-Positivos/microbiologia , HIV-1/crescimento & desenvolvimento , Sequência de Bases , DNA Viral/genética , Hibridização Genética , Leucemia Experimental/microbiologia , Dados de Sequência Molecular , Oligonucleotídeos/química , Reação em Cadeia da Polimerase , Mapeamento por Restrição , Transfecção
14.
J Virol Methods ; 34(1): 105-12, 1991 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-1955487

RESUMO

Routine methods of extraction of DNA from blood involve the enrichment of cells by Ficoll-Hypaque gradient centrifugation followed by lysis of the cells with extraction buffer, proteinase K digestion of the lysate, and phenol:chloroform-isoamyl alcohol extraction. These methods generally require large amounts of blood, which poses a problem with pediatric patients. To overcome this, we developed a new method of extracting DNA directly from whole blood. This method involves the treatment of whole blood with an equal volume of NaI (3 M final concentration) followed by chloroform:isoamyl alcohol extraction to clear hemoglobin and cell debris. The clear aqueous layer is then mixed with isopropanol to obtain DNA. A large number of samples can easily be handled by this extraction procedure, as it can be carried out in 30 min and requires only a microcentrifuge.


Assuntos
DNA Viral/isolamento & purificação , Reação em Cadeia da Polimerase/métodos , Sequência de Bases , Southern Blotting , Linhagem Celular , Centrifugação com Gradiente de Concentração , DNA Viral/sangue , HIV/genética , HIV/isolamento & purificação , Infecções por HIV/microbiologia , Humanos , Dados de Sequência Molecular , Iodeto de Sódio
15.
J Virol ; 52(1): 136-44, 1984 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-6384554

RESUMO

A 16-amino acid peptide, H2N-Arg-Glu-Gln-Thr-Val-Pro-Val-Asp-Leu-Ser-Val-Lys-Arg-Pro-Arg-Cys-COOH (peptide 204), targeted to the common C-terminus of human adenovirus 12 (Ad12) tumor antigens encoded by the E1A 13S mRNA and 12S mRNA, has been synthesized. Antibody prepared in rabbits against peptide 204 immunoprecipitated two proteins of apparent Mr 47,000 and 45,000 from extracts of [35S]methionine-labeled Ad12-early infected KB cells and a 47,000 protein from extracts of the Ad12-transformed hamster cell line, HE C19. Immunoprecipitation analysis of infected and transformed cells labeled with 32Pi showed that both major Ad12 E1A T antigens are phosphoproteins. Immunofluorescence microscopy of Ad12-early infected KB cells with antipeptide antibody showed the site of E1A protein concentration to be predominantly nuclear. E1A proteins were detected by immunofluorescence at 4 to 6 h postinfection and continued to increase until at least 18 h postinfection. Antipeptide 204 antibody was used to analyze the proteins synthesized in Escherichia coli cells transformed by plasmids containing cDNA copies of the Ad12 E1A 13S mRNA or 12S mRNA under the control of the tac promoter (D. Kimelman, L. A. Lucher, M. Green, K. H. Brackmann, J. S. Symington, and M. Ptashne, Proc. Natl. Acad. Sci. U.S.A., in press). A major protein of ca. 47,000 was immunoprecipitated from extracts of each transformed E. coli cell clone. Two-dimensional gel electrophoretic analysis of immunoprecipitates revealed that the T antigens synthesized in infected KB cells, transformed hamster cells, and transformed E. coli cells possess very similar molecular weights and acidic isoelectric points of 5.2 to 5.4.


Assuntos
Adenovírus Humanos/genética , Antígenos Virais de Tumores/genética , Transformação Celular Neoplásica , Escherichia coli/genética , Sequência de Aminoácidos , Animais , Linhagem Celular , Transformação Celular Viral , Cricetinae , Eletroforese em Gel de Poliacrilamida , Imunofluorescência , Peso Molecular , Peptídeos/síntese química , Fosforilação , Plasmídeos
16.
Virology ; 129(1): 12-24, 1983 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-6193636

RESUMO

The entire DNA genomes of five different human papillomaviruses (HPVs) were cloned into the BamHI site of pBR322 (HPV-1a, HPV-3, HPV-4, and HPV-9) or the EcoRI site of pBR325 (HPV-2), using as starting materials virus preparations isolated from papillomas of individual patients. Under stringent hybridization conditions (Tm-28 degrees), the five cloned HPVs exhibited less than 10% homology with one another. To establish model cell systems that may be useful for the identification of HPV genes and HPV gene products, mouse thymidine kinase negative (tk-) cells were cotransformed to the tk+ phenotype with the herpesvirus thymidine kinase gene and each of the five HPV cloned DNAs (either as intact recombinants or excised HPV DNA without removal of pBR). In most tk+ cell clones, a complex pattern of multiple high molecular weight inserts of HPV DNA were present in high copy number. Most of the HPV DNA sequences in the cotransformed cells were not present as unit-length episomal viral DNA. Analyses of the integration pattern (DNA blot) and RNA expression (RNA blot) of several HPV-1a and HPV-3 transformed cell lines suggest that some copies of the viral genome are integrated in a similar manner in different cell lines leading to the expression of identical viral RNA-containing species. Two of the cell lines transformed by the intact HPV-1a/pBR322 recombinant synthesized substantial amounts of four discrete viral polyadenylated cytoplasmic RNA species of 1.9, 3.2, 3.8, and 4.5 kb. Two cell lines transformed by the intact HPV-3/pBR322 recombinant synthesized 4-5 polyadenylated cytoplasmic viral RNA species ranging from 0.8 to 4.6 kb. The analysis shows that each viral RNA species appears to be a hybrid RNA molecule containing both HPV and pBR322 sequences. Based on these findings and the molecular organization of the HPV-1a genome (O. Danos, M. Katinka, and M. Yaniv (1982). EMBO J. 1, 231-237), it is possible that transcription of each of the HPV-1a RNA species is initiated using the HPV early promoter and terminated in pBR322.


Assuntos
Genes Virais , Papillomaviridae/genética , Transcrição Gênica , Transfecção , Animais , Linhagem Celular , Clonagem Molecular , Humanos , Camundongos , Hibridização de Ácido Nucleico , Poli A/análise , Poli A/biossíntese , RNA/análise , RNA/biossíntese , RNA Mensageiro , RNA Viral/análise , RNA Viral/biossíntese , Recombinação Genética
17.
J Virol ; 42(1): 30-41, 1982 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-7045392

RESUMO

The human adenovirus type 2 (Ad2) transforming genes are located in early regions E1a (map position 1.3 to 4.5) and E1b (map position 4.6 to 11.2). We have identified and purified to near homogeneity a major 20,000-molecular-weight (20K) protein and have shown that it is coded by E1b. Using an Ad2-transformed cell antiserum which contained antibody to E1b-coded proteins, we immunoprecipitated 53K and 19K proteins from the nucleoplasm and 53K, 19K, and 20K proteins from the cytoplasmic S-100 fraction of Ad2 productively infected and Ad2-transformed cells. The 19K protein was present in both the nucleoplasm and the cytoplasm, whereas the 20K protein was found only in the cytoplasm. The 53K and 19K proteins are known Ad2 E1b-coded proteins. The 20K protein was purified to near homogeneity in 20 to 50% yields by sequential DEAE-Sephacel chromatography and reverse-phase high-performance liquid chromatography. Purified 20K protein shares most of its methionine-labeled tryptic peptides with E1b-53K, as shown by reverse-phase high-performance liquid chromatography, and therefore is closely related to the 53K protein. The 19K protein does not appear to share tryptic peptides with either 20K or 53K protein. To provide more direct evidence that 20K protein is virus-coded, we translated E1b-specific mRNA in vitro. Both immunoprecipitation analysis and high-performance liquid chromatography purification of the translated product identified a 20K protein that has the same tryptic peptides as the 20K protein isolated from infected and from transformed cells. These findings suggest that the Ad2 20K protein is a primary translation product of an Ad2 E1b mRNA.


Assuntos
Adenovírus Humanos/genética , Transformação Celular Viral , Genes Virais , Proteínas Virais/isolamento & purificação , Cromatografia Líquida de Alta Pressão , Técnicas Imunológicas , RNA Mensageiro/genética , RNA Viral/genética , Proteínas Virais/genética , Proteínas Virais/imunologia
18.
J Virol ; 40(2): 541-50, 1981 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-7321096

RESUMO

Highly purified adenovirus type 2 terminal protein (TP) with an apparent M(r) of 55,000 (55K) was prepared in quantities of 10 to 30 mug from guanidine hydrochloride- or sodium dodecyl sulfate-disrupted virions (60 to 120 mg). Guinea pigs were immunized with 14 to 20 injections of TP in amounts of 1 to 2 mug. Antiserum to TP was used to study the intracellular polypeptides related to adenovirus type 2 TP. By immunoprecipitation with anti-TP serum, we identified 80K and 76K polypeptides in the nucleoplasmic and cytoplasmic S100 fractions of [(35)S]methionine-labeled cells early and late after infection with Ad2. By immunoautoradiographic analysis which eliminates coprecipitation of unrelated proteins, we identified an 80K polypeptide (probably an 80K-76K doublet) in unlabeled, late infected cells, using anti-TP serum and (125)I-labeled staphylococcal protein A. About two- to threefold-higher levels of the 80K and 76K polypeptides were present in the nucleoplasm than in the S100 fraction, and two- to threefold-higher levels were found in late infected cells than in early infected cells (cycloheximide enhanced, arabinofuranosylcytosine treated). We did not detect the 80K or 76K polypeptide in uninfected cells, indicating that these polypeptides are virus coded. Tryptic peptide map analysis showed that the 80K and 76K polypeptides are very closely related and that they share peptides with the DNA-bound 55K TP. Our data provide the first direct demonstration of intracellular 80K and 76K forms of TP. The intracellular 80K and 76K polypeptides are closely related or identical to the 80K polypeptide that Challberg and co-workers (Proc. Natl. Acad. Sci. U.S.A. 77:5105-5109, 1980) detected at the termini of adenovirus DNA synthesized in vitro and to the 87K polypeptide that Stillman and co-workers (Cell 23:497-508, 1981) translated in vitro. We did not detect the 55K TP in early or late infected cells, consistent with the proposal by Challberg and co-workers that the 80K polypeptide is a precursor to the virion-bound TP and that the conversion of the 80K polypeptide to the 55K TP occurs during virus maturation. The 80K and 76K polypeptides have many more methionine-containing tryptic peptides than does the 55K TP, and most of the tryptic peptides unique to the 80K and 76K polypeptides are very hydrophobic. Thus, the conversion of the 80K and 76K polypeptides to the 55K TP may involve the removal of a specific hydrophobic protein region.


Assuntos
Adenovírus Humanos/análise , Núcleo Celular/análise , Citoplasma/análise , Proteínas Virais/análise , Adenovírus Humanos/crescimento & desenvolvimento , Linhagem Celular , Humanos , Imunoensaio , Peso Molecular , Peptídeos/análise , Proteínas Virais/imunologia
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