Genome-wide association studies of preweaning growth and in vivo carcass composition traits in Esme sheep.

Sheep are considered as a major contributor of global food security. Moreover, sheep preweaning growth traits as well as in vivo carcass composition traits such as ultrasonic measurements of Longissimus dorsi muscle depth (UMD) and back-fat thickness (UFD) are crucially important indicators of meat yield and hot carcass composition. Despite their relative importance for productivity and profitability of a sheep production system, detected QTL for these traits are quite scarce. Therefore, we implemented GWAS for these traits using animal mixed model-based association approach provided by GenABEL in Esme sheep. Three genome-wide and 14 individual chromosome-wide associated SNPs were discovered. As a result, ESRP1, LOC105613082, ZNF641, DUSP5, TEAD1, SMOX, PTPRT, RALYL, POM121C, PHIP, LOC101106051, ZIM3, PEG3, TRPC7, FBXL4, LOC105610397, LOC105616489 and DNAAF2 were suggested as candidates. Some of the discovered genes and involved pathways were already annotated to contribute growth and development in various species including human, mice and cattle. All in all, the results of this study are expected to strongly contribute to shed a light on the underlying molecular mechanisms behind growth and carcass composition traits, with potential implications on studies aiming faster genetic improvement, targeted low-resolution SNP panel designs and genome-editing studies.

Genetic diversity in nine native Turkish sheep breeds based on microsatellite analysis.

The genetic variability of 204 sheep from nine breeds (Awassi, Çine Çapari, Karakas, Karya, Karayaka, Morkaraman, Norduz, Sakiz and Tuj) growing in four different regions (western, northern, eastern and south-eastern Anatolia) was assessed using 18 microsatellite loci. High mean number of alleles, allelic richness and factorial correspondence analysis showed the degree of admixture between native sheep breeds of Turkey. The Karya and Çine Çapari breeds were observed as the most distinct of the breeds, and possible introgressions were detected in other breeds. It was found that 8.9% of genetic variation resulted from the difference between the populations. The genetic variation in Turkish breeds was not much higher than that of European breeds, which might be a consequence of the recent sharp decrease in sheep numbers.

Estimation of mature live weight using some body measurements in Karya sheep.

The aim of this study was to determine models which will be used for the estimation of adult live weights based on some body measurements using multiple regression model in Karya sheep of different age groups. Animal material of the study consisted of a total of 215 Karya sheep. Least squares means for live weight, body length, rump height, withers height, back height, chest depth, chest girth, and chest width of Karya sheep in Adnan Menderes University Group Sheep Breeding Program elite flock and breeder flocks were found as 47.24 kg, 67.08, 68.29, 68.58, 66.97, 30.04, 93.24, and 18.29 cm, respectively. Karya ewes were put into five categories according to ages (2-6 years). High positive phenotypic correlation coefficients were observed between live weight and body measurements of animals in different age groups (2-6 years). Among the formed multiple regression models, the highest coefficients of determination (R(2)) were obtained from the models formed for body length or body length and chest girth together (R(2) = 0.79, R (2) = 0.87). It is concluded that live weight of Karya sheep can be estimated with a high accuracy using some body measurements and statistical methods.

Effect of body condition score at mating on the reproductive performance of Kivircik sheep under an extensive production system.

The aim of this study was to determine the effects of the body condition score (BCS) of ewes before and during the mating season on their reproductive performance under an extensive production system. In this study, 240 Kivircik sheep from the flocks of two breeders were used for over a 2-year period. The flocks were fed under extensive conditions on natural pastures throughout the year. The ewes were synchronized in two different periods, one of which was 45 days before the other. Before the introduction of rams to the ewes, the ewes were weighed after measuring their BCS. Detailed records were kept for every flock in each year. We found significant effects of BCS on pregnancy rate, lambing rate (P < 0.05) and fecundity (P < 0.05). The BCS for the highest pregnancy, lambing rate, and fecundity was determined between 2.01 and 3.00, while the lowest rates for these traits were ≤ 1.50. The highest rates of the pregnancy rate, lambing rate, and fecundity and gestation productivity were 75.9%, 70.9%, 1.11 and 3.34 kg, respectively.

Five ovine mitochondrial lineages identified from sheep breeds of the near East.

Archaeozoological evidence indicates that sheep were first domesticated in the Fertile Crescent. To search for DNA sequence diversity arising from previously undetected domestication events, this survey examined nine breeds of sheep from modern-day Turkey and Israel. A total of 2027 bp of mitochondrial DNA (mtDNA) sequence from 197 sheep revealed a total of 85 haplotypes and a high level of genetic diversity. Six individuals carried three haplotypes, which clustered separately from the known ovine mtDNA lineages A, B, and C. Analysis of genetic distance, mismatch distribution, and comparisons with wild sheep confirmed that these represent two additional mtDNA lineages denoted D and E. The two haplogroup E sequences were found to link the previously identified groups A and C. The single haplogroup D sequence branched with the eastern mouflon (Ovis orientalis), urial (O. vignei), and argali (O. ammon) sheep. High sequence diversity (K = 1.86%, haplogroup D and O. orientalis) indicates that the wild progenitor of this domestic lineage remains unresolved. The identification in this study of evidence for additional domestication events adds to the emerging view that sheep were recruited from wild populations multiple times in the same way as for other livestock species such as goat, cattle, and pig.