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1.
Microb Cell Fact ; 13(1): 92, 2014 Jul 15.
Artigo em Inglês | MEDLINE | ID: mdl-25023325

RESUMO

BACKGROUND: Butanol is an industrial commodity and also considered to be a more promising gasoline substitute compared to ethanol. Renewed attention has been paid to solvents (acetone, butanol and ethanol) production from the renewable and inexpensive substrates, for example, lignocellulose, on account of the depletion of oil resources, increasing gasoline prices and deteriorating environment. Limited to current tools for genetic manipulation, it is difficult to develop a genetically engineered microorganism with combined ability of lignocellulose utilization and solvents production. Mixed culture of cellulolytic microorganisms and solventogenic bacteria provides a more convenient and feasible approach for ABE fermentation due to the potential for synergistic utilization of the metabolic pathways of two organisms. But few bacteria pairs succeeded in producing biobutanol of high titer or high productivity without adding butyrate. The aim of this work was to use Clostridium cellulovorans 743B to saccharify lignocellulose and produce butyric acid, instead of adding cellulase and butyric acid to the medium, so that the soluble sugars and butyric acid generated can be subsequently utilized by Clostridium beijerinckii NCIMB 8052 to produce butanol in one pot reaction. RESULTS: A stable artificial symbiotic system was constructed by co-culturing a celluloytic, anaerobic, butyrate-producing mesophile (C. cellulovorans 743B) and a non-celluloytic, solventogenic bacterium (C. beijerinckii NCIMB 8052) to produce solvents by consolidated bioprocessing (CBP) with alkali extracted deshelled corn cobs (AECC), a low-cost renewable feedstock, as the sole carbon source. Under optimized conditions, the co-culture degraded 68.6 g/L AECC and produced 11.8 g/L solvents (2.64 g/L acetone, 8.30 g/L butanol and 0.87 g/L ethanol) in less than 80 h. Besides, a real-time PCR assay based on the 16S rRNA gene sequence was performed to study the dynamics of the abundance of each strain during the co-culturing process, which figured out the roles of each strain at different periods in the symbiosis. CONCLUSION: Our work illustrated the great potential of artificial symbiosis in biofuel production from lignocellulosic biomass by CBP. The dynamics of the abundance of C. beijerinckii and C. cellulovorans revealed mechanisms of cooperation and competition between the two strains during the co-culture process.


Assuntos
1-Butanol/metabolismo , Acetona/metabolismo , Clostridium beijerinckii/metabolismo , Clostridium cellulovorans/metabolismo , Etanol/metabolismo , Microbiologia Industrial/métodos , Zea mays/microbiologia , Clostridium beijerinckii/crescimento & desenvolvimento , Clostridium cellulovorans/crescimento & desenvolvimento , Técnicas de Cocultura , Fermentação , Simbiose , Zea mays/química
2.
J Zhejiang Univ Sci B ; 15(5): 491-9, 2014 May.
Artigo em Inglês | MEDLINE | ID: mdl-24793767

RESUMO

The Rhodobacter capsulatus hemA gene, which encodes 5-aminolevulinic acid synthase (ALAS), was expressed in Escherichia coli Rosetta (DE3) and the enzymatic properties of the purified recombinant ALAS (RC-ALAS) were studied. Compared with ALASs encoded by hemA genes from Agrobacterium radiobacter (AR-ALAS) and Rhodobacter sphaeroides (RS-ALAS), the specific activity of RC-ALAS reached 198.2 U/mg, which was about 31.2% and 69.5% higher than those of AR-ALAS (151.1 U/mg) and RS-ALAS (116.9 U/mg), respectively. The optimum pH values and temperatures of the three above mentioned enzymes were all pH 7.5 and 37 °C, respectively. Moreover, RC-ALAS was more sensitive to pH, while the other two were sensitive to temperature. The effects of metals, ethylene diamine tetraacetic acid (EDTA), and sodium dodecyl sulfate (SDS) on the three ALASs were also investigated. The results indicate that they had the same effects on the activities of the three ALASs. SDS and metal ions such as Co(2+), Zn(2+), and Cu(2+) strongly inhibited the activities of the ALASs, while Mn(2+) exerted slight inhibition, and K(+), Ca(2+), Ba(2+), Mg(2+), or EDTA had no significant effect. The specificity constant of succinyl coenzyme A [(kcat/Km)(S-CoA)] of RC-ALAS was 1.4989, which was higher than those of AR-ALAS (0.7456) and RS-ALAS (1.1699), showing its high catalytic efficiency. The fed-batch fermentation was conducted using the recombinant strain containing the R. capsulatus hemA gene, and the yield of 5-aminolevulinic acid (ALA) achieved was 8.8 g/L (67 mmol/L) under the appropriate conditions.


Assuntos
5-Aminolevulinato Sintetase/metabolismo , Aldeído Oxirredutases/metabolismo , Ácido Aminolevulínico/metabolismo , Escherichia coli/fisiologia , Regulação Bacteriana da Expressão Gênica , Rhodobacter capsulatus/enzimologia , Rhodobacter capsulatus/genética , 5-Aminolevulinato Sintetase/química , 5-Aminolevulinato Sintetase/isolamento & purificação , Aldeído Oxirredutases/química , Aldeído Oxirredutases/isolamento & purificação , Ácido Aminolevulínico/química , Ativação Enzimática , Estabilidade Enzimática , Regulação Bacteriana da Expressão Gênica/fisiologia , Regulação Enzimológica da Expressão Gênica/fisiologia , Engenharia de Proteínas/métodos , Proteínas Recombinantes/química , Proteínas Recombinantes/isolamento & purificação , Proteínas Recombinantes/metabolismo , Solubilidade , Especificidade por Substrato
3.
Enzyme Microb Technol ; 55: 26-30, 2014 Feb 05.
Artigo em Inglês | MEDLINE | ID: mdl-24411442

RESUMO

Aquaporin Z (AqpZ) is a water channel protein from Escherichia coli and has attracted many attentions to develop the biomimetic water filtration technology. Cell-free protein synthesis (CFPS) system, one of the most complex multi-enzymatic systems, has the ability of producing the integral membrane protein in vitro. To enhance the synthesis of AqpZ in E. coli cell-free system, several natural leader peptides were respectively fused at the N-terminus and were verified to enhance the expression level significantly. Moreover, the supplementation of detergents or liposome could activate leader peptidase from the cell-free extract and provide hydrophobic environment for proper folding of AqpZ. Thus, the release of mature AqpZ via the in situ removal of leader peptide was achieved, with a specific water transport activity of (2.1 ± 0.1) × 10⁻¹4 cm³ s⁻¹ monomer⁻¹. Using this in situ removable leader peptide strategy, the transcription-translation, leader sequence cleavage and membrane protein folding were integrated into a simple process in the cell-free system, providing a convenient approach to enhance the expression of target proteins, especially those membrane proteins difficult to achieve.


Assuntos
Aquaporinas/biossíntese , Proteínas de Escherichia coli/biossíntese , Escherichia coli/enzimologia , Sinais Direcionadores de Proteínas/genética , Sequência de Aminoácidos , Aquaporinas/genética , Aquaporinas/isolamento & purificação , Sistema Livre de Células , Detergentes/farmacologia , Proteínas de Escherichia coli/genética , Proteínas de Escherichia coli/isolamento & purificação , Regulação Enzimológica da Expressão Gênica , Genes Sintéticos , Vetores Genéticos , Lipossomos , Proteínas de Membrana/metabolismo , Dados de Sequência Molecular , Biossíntese de Proteínas , Sinais Direcionadores de Proteínas/fisiologia , Proteínas Recombinantes de Fusão/biossíntese , Proteínas Recombinantes de Fusão/efeitos dos fármacos , Proteínas Recombinantes de Fusão/isolamento & purificação , Serina Endopeptidases/metabolismo , Transcrição Gênica , Água/metabolismo
4.
World J Microbiol Biotechnol ; 30(3): 893-901, 2014 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-24092392

RESUMO

High-level production of G protein-coupled receptors (GPCRs) is usually difficult to achieve in heterologous cell systems. The inherent hydrophobicity of these receptors could cause aggregation and possible cytotoxicity. Cell-free (CF) expression has become a highly promising tool for the fast and efficient production of integral membrane proteins. Here we reported the CF production of an olfactory receptor from Caenorhabditis elegans, odorant response abnormal protein 10 (ODR-10), a member of GPCRs, using the Escherichia coli extracts. Different expression vectors were investigated and 175 µg/ml total ODR-10 was achieved with pIVEX2.4c. To obtain soluble ODR-10, different detergents and liposome with varied concentrations were respectively added into the CF system. High-level expression of soluble ODR-10 (150 µg/ml) was attained with the addition of 1.5 % polyoxyethylene-(20)-cetyl-ether (Brij58) into the CF system. Furthermore, the yield of total ODR-10 was improved to 350 µg/ml by supplementing liposomes into the CF system, and the maximal concentration of the soluble receptor (102 µg/ml) was achieved in this liposome-assisted CF system. Both strategies produced ODR-10 efficiently by using CF system, and the direct reconstitution of the in vitro expressed receptor into liposomes will be preferred for its potential applications in many areas.


Assuntos
Proteínas de Caenorhabditis elegans/biossíntese , Caenorhabditis elegans/genética , Receptores Odorantes/biossíntese , Animais , Proteínas de Caenorhabditis elegans/genética , Sistema Livre de Células , Escherichia coli/metabolismo , Receptores Odorantes/genética
5.
J Biotechnol ; 164(1): 67-74, 2013 Mar 10.
Artigo em Inglês | MEDLINE | ID: mdl-23275182

RESUMO

Poly-γ-glutamic acid (γ-PGA) is an extracellular anionic polymer with many potential applications. Although microbial fermentation is the common approach to produce γ-PGA, the broth at the latter stage usually becomes very viscous and severely influences the metabolites producing pattern of target microbe. In this study, acetoin and 2,3-butanediol were confirmed to be the main byproducts of γ-PGA-producing strain B. subtilis ZJU-7 (B. subtilis CGMCC1250), and their effects on the cell growth and γ-PGA biosynthesis were further investigated in shake flasks. The outcome indicated that both acetoin and 2,3-butanediol showed clear impairment on γ-PGA production of B. subtilis ZJU-7. Moreover, the extracellular metabolites profiles of fermentation under three different pH values were acquired and the metabolic flux redistribution of pathways related to γ-PGA biosynthesis was calculated based on the collected data. As a result, the metabolic flux favored to distribute toward glycolytic pathway at pH 6.5, in which the ingestion rate of extracellular glutamic acid was higher and the subsequent γ-PGA biosynthesis was enhanced. The present work provided us a deep insight into the metabolic flux control of γ-PGA biosynthesis, which will stimulate some novel metabolic engineering strategies to improve the productivity of γ-PGA in future.


Assuntos
Acetoína/metabolismo , Bacillus subtilis/metabolismo , Butileno Glicóis/metabolismo , Ácido Poliglutâmico/análogos & derivados , Acetoína/análise , Reatores Biológicos/microbiologia , Biotecnologia , Butileno Glicóis/análise , Ciclo do Carbono , Fermentação , Concentração de Íons de Hidrogênio , Engenharia Metabólica , Redes e Vias Metabólicas , Metaboloma , Ácido Poliglutâmico/metabolismo
6.
Expert Opin Drug Discov ; 7(9): 761-70, 2012 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-22724503

RESUMO

INTRODUCTION: Inkjet dispensing technology is a promising fabrication methodology widely applied in drug discovery. The automated programmable characteristics and high-throughput efficiency makes this approach potentially very useful in miniaturizing the design patterns for assays and drug screening. Various custom-made inkjet dispensing systems as well as specialized bio-ink and substrates have been developed and applied to fulfill the increasing demands of basic drug discovery studies. The incorporation of other modern technologies has further exploited the potential of inkjet dispensing technology in drug discovery and development. AREAS COVERED: This paper reviews and discusses the recent developments and practical applications of inkjet dispensing technology in several areas of drug discovery and development including fundamental assays of cells and proteins, microarrays, biosensors, tissue engineering, basic biological and pharmaceutical studies. EXPERT OPINION: Progression in a number of areas of research including biomaterials, inkjet mechanical systems and modern analytical techniques as well as the exploration and accumulation of profound biological knowledge has enabled different inkjet dispensing technologies to be developed and adapted for high-throughput pattern fabrication and miniaturization. This in turn presents a great opportunity to propel inkjet dispensing technology into drug discovery.


Assuntos
Biotecnologia/métodos , Sistemas de Liberação de Medicamentos/métodos , Descoberta de Drogas/métodos , Miniaturização/métodos , Preparações Farmacêuticas/administração & dosagem , Biotecnologia/normas , Sistemas de Liberação de Medicamentos/normas , Descoberta de Drogas/normas , Humanos , Miniaturização/normas , Preparações Farmacêuticas/normas
7.
Appl Environ Microbiol ; 78(15): 5093-103, 2012 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-22582065

RESUMO

FK506 is a potent immunosuppressant that has a wide range of clinical applications. Its 23-member macrocyclic scaffold, mainly with a polyketide origin, features two methoxy groups at C-13 and C-15 and one allyl side chain at C-21, due to the region-specific incorporation of two unusual extender units derived from methoxymalonyl-acyl carrier protein (ACP) and allylmalonyl-coenzyme A (CoA), respectively. Whether their intracellular formations can be a bottleneck for FK506 production remains elusive. In this study, we report the improvement of FK506 yield in the producing strain Streptomyces tsukubaensis by the duplication of two sets of pathway-specific genes individually encoding the biosyntheses of these two extender units, thereby providing a promising approach to generate high-FK506-producing strains via genetic manipulation. Taking advantage of the fact that S. tsukubaensis is amenable to two actinophage (ΦC31 and VWB) integrase-mediated recombination systems, we genetically enhanced the biosyntheses of methoxymalonyl-ACP and allylmalonyl-CoA, as indicated by transcriptional analysis. Together with the optimization of glucose supplementation, the maximal FK506 titer eventually increased by approximately 150% in comparison with that of the original strain. The strategy of engineering the biosynthesis of unusual extender units described here may be applicable to improving the production of other polyketide or nonribosomal peptide natural products that contain pathway-specific building blocks.


Assuntos
Vias Biossintéticas/genética , Biotecnologia/métodos , Imunossupressores/metabolismo , Recombinação Genética/genética , Streptomyces/metabolismo , Tacrolimo/metabolismo , Proteína de Transporte de Acila/biossíntese , Compostos Alílicos/química , Sequência de Bases , Primers do DNA/genética , Escherichia coli/genética , Duplicação Gênica/genética , Imunossupressores/química , Dados de Sequência Molecular , Estrutura Molecular , Policetídeos/química , Reação em Cadeia da Polimerase Via Transcriptase Reversa , Análise de Sequência de DNA , Streptomyces/genética , Tacrolimo/química
8.
Enzyme Microb Technol ; 48(6-7): 438-44, 2011 May 06.
Artigo em Inglês | MEDLINE | ID: mdl-22113014

RESUMO

With improved enzymatic activity and easy accessibility, the recombinant purine nucleoside phosphorylase (PNPase) could be a very promising alternative for nucleoside biosynthesis. In our work, the deoD gene encoding PNPase was successfully cloned from Escherichia coli MG1665 and overexpressed in E. coli BL 21(DE3). After optimization of expression conditions including temperature, induction timing and isopropyl-thio-ß-D-galactoside (IPTG) concentration, over 70% of expressed total protein was His-tagged PNPase, in the soluble and functional form. Followed assays indicated that the recombinant enzyme exhibited similar substrate specificity and pH preference as the wild type PNPase. Furthermore, the immobilization technology was applied to develop the possible application of recombinant enzyme. Agar from four different polymer carriers was selected as a suitable matrix for whole recombinant cell entrapment. Subsequent enzyme assays, kinetic analysis and stability evaluation of free and immobilized recombinant cells were compared. The results indicated that although the immobilization process reduced the substrate affinity and catalytic efficiency of recombinant cells, it could significantly enhance the stability and reusability of these cells. Finally, the immobilized whole cell biocatalyst was applied to produce ribavirin, as a model nucleoside synthesis reaction. The obtained relative high productivity of ribavirin and quick reaction time suggested the great potential and feasibility of immobilized PNPase in efficient and valuable industrial utilizations.


Assuntos
Células Imobilizadas , Proteínas de Escherichia coli/genética , Escherichia coli/enzimologia , Genes Bacterianos , Purina-Núcleosídeo Fosforilase/genética , Ribavirina/metabolismo , Ágar , Biocatálise , Clonagem Molecular , Proteínas de Escherichia coli/isolamento & purificação , Proteínas de Escherichia coli/metabolismo , Géis , Guanosina/metabolismo , Concentração de Íons de Hidrogênio , Cinética , Purina-Núcleosídeo Fosforilase/isolamento & purificação , Purina-Núcleosídeo Fosforilase/metabolismo , Proteínas Recombinantes de Fusão/isolamento & purificação , Proteínas Recombinantes de Fusão/metabolismo , Especificidade por Substrato , Temperatura , Triazóis/metabolismo
9.
Appl Microbiol Biotechnol ; 92(2): 295-303, 2011 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-21655983

RESUMO

Poly (ß-L: -malic acid) (PMLA) is a water-soluble polyester with many attractive properties in chemical industry and medicine development. However, the low titer of PMLA in the available producer strains limits further industrialization efforts and restricts its many potential applications. In order to solve this problem, a new strain with the distinguished high productivity of PMLA was isolated from fresh plants samples. It was characterized as the candidate of Aureobasidium pullulans based on the morphology and phylogenetic analyses of the internal transcribed spacer sequences. After the optimization of culture conditions, the highest PMLA concentration (62.27 g l(-1)) could be achieved in the shake flask scale. In addition, the contribution of the carbon flux to exopolysaccharide (EPS) and PMLA could be regulated by the addition of CaCO3 in the medium. This high-level fermentation process was further scaled up in the 10 l benchtop fermentor with a high PMLA concentration (57.2 g l(-1)) and productivity (0.35 g l(-1) h(-1)), which are the highest level in all the literature. Finally, the suitable acid hydrolysis conditions of PMLA were also investigated with regard to the production of L: -malic acid, and the kinetics of PMLA acid hydrolysis was modeled to simulate the whole degradation process. The present work paved the road to produce this multifunctional biomaterial (PMLA) at industrial scale and promised one alternative method to produce L: -malic acid in the future.


Assuntos
Ascomicetos/isolamento & purificação , Ascomicetos/metabolismo , Malatos/metabolismo , Polímeros/metabolismo , Ascomicetos/classificação , Ascomicetos/genética , Reatores Biológicos/microbiologia , Fermentação , Dados de Sequência Molecular , Filogenia , Plantas/microbiologia
10.
Biotechnol Bioeng ; 108(1): 31-40, 2011 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-20824675

RESUMO

Repeated fed-batch fermentation of glucose by Clostridium tyrobutyricum immobilized in a fibrous bed bioreactor (FBB) was successfully employed to produce butyric acid at a high final concentration as well as to adapt a butyric-acid-tolerant strain. At the end of the eighth fed-batch fermentation, the butyric acid concentration reached 86.9 ± 2.17 g/L, which to our knowledge is the highest butyric acid concentration ever produced in the traditional fermentation process. To understand the mechanism and factors contributing to the improved butyric acid production and enhanced acid tolerance, adapted strains were harvested from the FBB and characterized for their physiological properties, including specific growth rate, acid-forming enzymes, intracellular pH, membrane-bound ATPase and cell morphology. Compared with the original culture used to seed the bioreactor, the adapted culture showed significantly reduced inhibition effects of butyric acid on specific growth rate, cellular activities of butyric-acid-forming enzyme phosphotransbutyrylase (PTB) and ATPase, together with elevated intracellular pH, and elongated rod morphology.


Assuntos
Reatores Biológicos/microbiologia , Ácido Butírico/metabolismo , Ácido Butírico/toxicidade , Células Imobilizadas/efeitos dos fármacos , Células Imobilizadas/metabolismo , Clostridium tyrobutyricum/efeitos dos fármacos , Clostridium tyrobutyricum/metabolismo , Adenosina Trifosfatases/metabolismo , Antibacterianos/metabolismo , Antibacterianos/toxicidade , Membrana Celular/enzimologia , Clostridium tyrobutyricum/citologia , Clostridium tyrobutyricum/enzimologia , Citosol/química , Fermentação , Glucose/metabolismo , Concentração de Íons de Hidrogênio , Microscopia , Fosfato Acetiltransferase/metabolismo
11.
PLoS One ; 5(9): e12972, 2010 Sep 24.
Artigo em Inglês | MEDLINE | ID: mdl-20885983

RESUMO

The continuous progress in the structural and functional characterization of aquaporins increasingly attracts attention to study their roles in certain mammalian diseases. Although several structures of aquaporins have already been solved by crystallization, the challenge of producing sufficient amounts of functional proteins still remains. CF (cell free) expression has emerged in recent times as a promising alternative option in order to synthesize large quantities of membrane proteins, and the focus of this report was to evaluate the potential of this technique for the production of eukaryotic aquaporins. We have selected the mouse aquaporin 4 as a representative of mammalian aquaporins. The protein was synthesized in an E. coli extract based cell-free system with two different expression modes, and the efficiencies of two modes were compared. In both, the P-CF (cell-free membrane protein expression as precipitate) mode generating initial aquaporin precipitates as well as in the D-CF (cell-free membrane protein expression in presence of detergent) mode, generating directly detergent solubilized samples, we were able to obtain mg amounts of protein per ml of cell-free reaction. Purified aquaporin samples solubilized in different detergents were reconstituted into liposomes, and analyzed for the water channel activity. The calculated P(f) value of proteoliposome samples isolated from the D-CF mode was 133 µm/s at 10°C, which was 5 times higher as that of the control. A reversible inhibitory effect of mercury chloride was observed, which is consistent with previous observations of in vitro reconstituted aquaporin 4. In this study, a fast and convenient protocol was established for functional expression of aquaporins, which could serve as basis for further applications such as water filtration.


Assuntos
Aquaporina 4/genética , Aquaporina 4/metabolismo , Engenharia de Proteínas/métodos , Animais , Aquaporina 4/isolamento & purificação , Sistema Livre de Células/metabolismo , Escherichia coli/química , Escherichia coli/genética , Escherichia coli/metabolismo , Expressão Gênica , Proteínas de Membrana/genética , Proteínas de Membrana/isolamento & purificação , Proteínas de Membrana/metabolismo , Camundongos
12.
Adv Biochem Eng Biotechnol ; 122: 43-71, 2010.
Artigo em Inglês | MEDLINE | ID: mdl-20549466

RESUMO

Over the last 20 years, China has successfully established a modern biotechnology industry from almost nothing. Presently, China is a major producer of a vast array of products involving bioprocesses, for some China is even the world's top producer. The ever-increasing list of products includes organic acids, amino acids, antibiotics, solvents, chiral chemicals, biopesticides, and biopolymers. Herein, the research and development of bioprocesses in China will be reviewed briefly. We will concentrate on three categories of products: small molecules produced via fermentation, biopolymers produced via fermentation and small chemicals produced by enzyme-catalyzed reactions. In comparison with the traditional chemical process, in which, nonrenewable mineral resources are generally used, products in the first and second categories noted above can use renewable bioresources as raw materials. The bioprocesses are generally energy saving and environmentally benign. For products developed via the third category, although the raw materials still need to be obtained from mineral resources, the biocatalysts are more effective with higher selectivity and productivity, and the bioprocesses occur under ambient temperature and pressure, therefore, these are "green processes." Most of the products such as citric acid, xanthan and acrylamide etc., discussed in this paper have been in large-scale commercial production in China. Also introduced herein are three scientists, Prof. Shen Yinchu, Prof. Ouyang Pingkai and Prof. Chen Guoqiang, and six enterprises, Anhui Fengyuan Biochemical Co. Ltd., Shandong Hiland Biotechnology Co. Ltd., Shandong Fufeng Fermentation Co. Ltd., Shandong Bausch & Lomb-Freda Pharmaceutical Co. Ltd., Zhejiang Hangzhou Xinfu Pharmaceutical Co. Ltd., and Changzhou Changmao Biochemical Engineering Co. Ltd.; they have all contributed a great deal to research and development in the commercialization of bioprocesses.


Assuntos
Biocombustíveis , Produtos Biológicos/química , Biotecnologia/tendências , Indústria Química/tendências , Indústria Farmacêutica/tendências , Química Verde/tendências , Compostos Orgânicos/química , China
13.
Mol Biol Rep ; 37(7): 3297-302, 2010 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-19949874

RESUMO

An alkaline active xylanase, XynBYG, was purified from an alkaliphilic Bacillus pumilus BYG, which was newly isolated from paper mill effluent. It had an optimum pH of 8.0-9.0, and showed good stability after incubated at pH 9.0 for 120 min. The optimum temperature for the activity was 50°C, and the enzyme retained below 55% of its original activity for 30 min at 55°C. The gene coding for XynBYG consists of 687 bp and encodes 229 amino acids. Similarity analysis indicated that XynBYG belong to family 11 glycosyl hydrolases. Site-directed mutagenesis was performed to replace five sites (Tyr/Ser) to Arg/Glu and the results demonstrated that the optimum temperature of the mutant Y7 (S39R-T146E) increased 5°C and the half-life of inactivation (T1/2) at 60 and 65°C was 1 h and 25 min, respectively. Thus, it provides a potential xylanase that can meet the harsh conditions in the industrial applications.


Assuntos
Álcalis/farmacologia , Bacillus/enzimologia , Bacillus/isolamento & purificação , Endo-1,4-beta-Xilanases/biossíntese , Resíduos Industriais/análise , Papel , Eliminação de Resíduos Líquidos , Adaptação Fisiológica/efeitos dos fármacos , Bacillus/genética , Clonagem Molecular , Eletroforese em Gel de Poliacrilamida , Estabilidade Enzimática/efeitos dos fármacos , Escherichia coli/efeitos dos fármacos , Escherichia coli/metabolismo , Regulação Bacteriana da Expressão Gênica/efeitos dos fármacos , Genes Bacterianos/genética , Concentração de Íons de Hidrogênio/efeitos dos fármacos , Mutagênese Sítio-Dirigida , Análise de Sequência de DNA , Temperatura
14.
Mol Biol Rep ; 37(5): 2207-13, 2010 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-19669928

RESUMO

Here, we present the electroporation as a feasible and efficient method for introducing circularized and linearized DNA into Bacillus subtilis chromosome. Two integration experiments were carried out and demonstrated the feasibility and efficiency of electroporation to introduce the target DNA into the B. subtilis chromosome. By using of electroporation, a multiple-cistron contained five genes from B. subtilis biotin biosynthetic pathway was introduced into the B. subtilis chromosome efficiently and created a repeated copy in chromosome via a single crossover event. Then an ectopic promoter was introduced conveniently into the upstream of one of the repeated multiple-cistron via a double crossover event. To further demonstrate the application of electroporation in genetic research, the early sporulation gene spo0A of B. subtilis was knocked out and, consequently, the null of sporulation and logged growth was observed in this study. Thus, the electroporation as an alternative method of integration in B. subtilis is feasible and practical.


Assuntos
Bacillus subtilis/genética , Cromossomos Bacterianos/genética , DNA Bacteriano/genética , DNA Circular/genética , Eletroporação/métodos , Bacillus subtilis/fisiologia , Proteínas de Bactérias/genética , Deleção de Genes , Técnicas de Inativação de Genes , Genes Bacterianos/genética , Plasmídeos/genética , Reprodutibilidade dos Testes , Esporos Bacterianos/genética , Fatores de Transcrição/genética
15.
Appl Biochem Biotechnol ; 160(2): 350-9, 2010 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-18651247

RESUMO

Butyric acid has many applications in chemical, food, and pharmaceutical industries. In the present study, Clostridium tyrobutyricum ATCC 25755 was immobilized in a fibrous-bed bioreactor to evaluate the performance of butyrate production from glucose and xylose. The results showed that the final concentration and yield of butyric acid were 13.70 and 0.46 g g(-1), respectively, in batch fermentation when 30 g L(-1) glucose was introduced into the bioreactor. Furthermore, high concentration 10.10 g L(-1) and yield 0.40 g g(-1) of butyric acid were obtained with 25 g L(-1) xylose as the carbon source. The immobilized cells of C. tyrobutyricum ensured similar productivity and yield from repeated batch fermentation. In the fed-batch fermentation, the final concentration of butyric acid was further improved to 24.88 g L(-1) with one suitable glucose feeding in the fibrous-bed bioreactor. C. tyrobutyricum immobilized in the fibrous-bed bioreactor would provide an economically viable fermentation process to convert the reducing sugars derived from plant biomass into the final bulk chemical (butyric acid).


Assuntos
Reatores Biológicos/microbiologia , Ácido Butírico/metabolismo , Clostridium tyrobutyricum/metabolismo , Glucose/metabolismo , Xilose/metabolismo , Células Imobilizadas/metabolismo , Fermentação
16.
Appl Biochem Biotechnol ; 160(2): 370-7, 2010 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-18668374

RESUMO

Poly-gamma-glutamic acid (gamma-PGA) is a kind of water-soluble and biodegradable polymer made from D- and L-glutamic acid units, which are linked by amide bonds formed between alpha-amino and gamma-carboxylic acid groups. As a potential targeted biopolymer that can be refined from biomass directly, gamma-PGA has been increasingly applied to food, cosmetic, and pharmaceutical industries. In this work, a suitable nitrogen source was screened out for the high and cost-effective production of gamma-PGA in Bacillus subtilis ZJU-7. The effects of inoculation time and initial glucose concentration on the gamma-PGA production were investigated systematically in both shake flasks and a bench-top 15-l fermentor. Under the optimized culture conditions, a high gamma-PGA productivity (46.4 g/l) was obtained after 48 h cultivation at 37 degrees C. Finally, the large-scale fermentation of gamma-PGA production was successfully scaled up to a 100-l fermentor, with the highest gamma-PGA productivity for over 54.0 g/l.


Assuntos
Bacillus subtilis/metabolismo , Técnicas de Cultura/métodos , Microbiologia Industrial/métodos , Ácido Poliglutâmico/análogos & derivados , Bacillus subtilis/química , Reatores Biológicos/microbiologia , Meios de Cultura/química , Meios de Cultura/metabolismo , Fermentação , Glucose/metabolismo , Ácido Poliglutâmico/metabolismo
17.
Appl Biochem Biotechnol ; 160(2): 456-66, 2010 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-18800199

RESUMO

The 5-aminolevulinate (ALA) synthase gene (hemA) from Agrobacterium radiobacter zju-0121, which was cloned previously in our laboratory, contains several rare codons. To enhance the expression of this gene, Escherichia coli Rosetta(DE3), which is a rare codon optimizer strain, was picked out as the host to construct an efficient recombinant strain. Cell extracts of the recombinant E. coli were analyzed by sodium dodecyl sulfate-polyacrylamide gel electrophoresis under the appropriate conditions. The results indicated that the activity of ALA synthase expressed in Rosetta(DE3)/pET-28a(+)-hemA was about 20% higher than that in E. coli BL21(DE3). Then the effects of precursors (glycine and succinate) and glucose, which is an inhibitor for ALA dehydratase as well as the carbon sources for cell growth, on the production of 5-aminolevulinate were investigated. Based on an optimal fed-batch culture system described in our previous work, up to 6.5 g/l (50 mM) ALA was produced in a 15-l fermenter.


Assuntos
5-Aminolevulinato Sintetase/genética , Ácido Aminolevulínico/metabolismo , Proteínas de Bactérias/genética , Códon , Escherichia coli/metabolismo , Engenharia de Proteínas , Rhizobium/enzimologia , 5-Aminolevulinato Sintetase/metabolismo , Proteínas de Bactérias/metabolismo , Escherichia coli/genética , Fermentação , Expressão Gênica
18.
Appl Microbiol Biotechnol ; 83(3): 507-12, 2009 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-19259658

RESUMO

Rapamycin is a 31-member ring macrolide produced by Streptomyces hygroscopicus and has many applications in clinical medicine. In the present work, several protoplasts-related techniques including protoplasts mutation, intraspecies and interspecies protoplasts fusion were tried to improve the rapamycin productivity in S. hygroscopicus. Although mutation and fusion of different protoplasts of S. hygroscopicus did not improve the productivity of rapamycin significantly, the interspecies fusion of protoplasts of S. hygroscopicus D7-804 and Streptomyces erythreus ZJU325 could have brought about one high-yield (345 mg/L) rapamycin producer with 23.6% higher than that of the parental strain. Then, with seven mutants of S. hygroscopicus with different features and rapamycin productivities as the parental strains, only one-round genome shuffling has generated a high-yield rapamycin-producing strain with an outstanding yield of 445 mg/L. The systematic research of protoplast-related techniques has established an applicable way to generate high-yield strains from original microorganisms which can only produce low amount of expected natural products, without information of target gene clusters and gene sequences.


Assuntos
Técnicas Genéticas , Protoplastos/metabolismo , Sirolimo/metabolismo , Streptomyces/genética , Embaralhamento de DNA , Mutação , Streptomyces/metabolismo
19.
Bioresour Technol ; 100(13): 3403-9, 2009 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-19297150

RESUMO

Butyrate fermentation by immobilized Clostridium tyrobutyricum was successfully carried out in a fibrous bed bioreactor using cane molasses. Batch fermentations were conducted to investigate the influence of pH on the metabolism of the strain, and the results showed that the fermentation gave a highest butyrate production of 26.2 g l(-1) with yield of 0.47 g g(-1) and reactor productivity up to 4.13 g l(-1)h(-1) at pH 6.0. When repeated-batch fermentation was carried out, long-term operation with high butyrate yield, volumetric productivity was achieved. Several cane molasses pretreatment techniques were investigated, and it was found that sulfuric acid treatment gave better results regarding butyrate concentration (34.6+/-0.8 g l(-1)), yield (0.58+/-0.01 g g(-1)), and sugar utilization (90.8+/-0.9%). Also, fed-batch fermentation from cane molasses pretreated with sulfuric acid was performed to further increase the concentration of butyrate up to 55.2 g l(-1).


Assuntos
Reatores Biológicos , Biotecnologia/métodos , Ácido Butírico/química , Clostridium tyrobutyricum/metabolismo , Fermentação , Melaço , Ácido Butírico/metabolismo , Desenho de Equipamento , Concentração de Íons de Hidrogênio , Microbiologia Industrial/métodos , Ácidos Sulfúricos/química
20.
Bioresour Technol ; 100(7): 2293-7, 2009 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-19095441

RESUMO

The hemA gene encoding 5-aminolevulinate synthase (ALAS) from Agrobacterium radiobacter zju-0121 showed 92.6% homology with that from A. radiobacter ATCC4718 and contained several rare codons. To enhance the expression of this gene, Escherichia coli Rosetta(DE3), which is a rare codon optimizer strain, was used as the host to construct an efficient recombinant strain. And the encoded protein was over-expressed as fusion protein and was purified by affinity purification on Ni-NTA agarose and by gel filtration chromatography on Sephadex G-25 Medium resin. The recombinant protein was partly characterized, and D-glucose, D-fructose, D-xylose, D-mannose, L-arabinose, D-galactose, lactose, sucrose and maltose were detected to have no distinct inhibition on this recombinant ALAS. Meanwhile, 20mM D-glucose or D-xylose inhibited about 20% activity of ALA dehydratase (ALAD) from Escherichia coli Rosetta(DE3). Combining D-xylose as a new inhibitor for ALAD with D-glucose in fed-batch culture and based on the optimal culture system using Rosetta(DE3)/pET28a-hemA, the yield of ALA achieved was 7.3g/l (56 mM) under the appropriate conditions in the fermenter.


Assuntos
5-Aminolevulinato Sintetase/isolamento & purificação , Agrobacterium tumefaciens/enzimologia , Ácido Aminolevulínico/metabolismo , Inibidores Enzimáticos/análise , Inibidores Enzimáticos/farmacologia , Escherichia coli/enzimologia , Sintase do Porfobilinogênio/antagonistas & inibidores , Agrobacterium tumefaciens/efeitos dos fármacos , Carboidratos/farmacologia , Escherichia coli/efeitos dos fármacos , Íons , Metais/farmacologia , Proteínas Recombinantes/isolamento & purificação , Temperatura
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