Capture and transport of white rhinoceroses (Ceratotherium simum) cause shifts in their fecal microbiota composition towards dysbiosis.

Translocations of Rhinocerotidae are commonly performed for conservation purposes but expose the animals to a variety of stressors (e.g. prolonged fasting, confinement, novel environment, etc.). Stress may change the composition of gut microbiota, which can impact animal health and welfare. White rhinoceroses in particular can develop anorexia, diarrhea and enterocolitis after translocation. The aim of this study was to investigate the associations of age, sex and translocation on the rhinoceros' fecal bacterial microbiota composition. fecal samples were collected from rhinoceroses at capture (n = 16) and after a >30-hour road transport (n = 7). DNA was isolated from these samples and submitted for 16S rRNA V3-V4 phylotyping. Alpha diversity indices of the rhinoceros' fecal microbiota composition of different age, sex and before and after transport were compared using non-parametric statistical tests and beta diversity indices using Permutational Multivariate Analysis Of Variance (PERMANOVA). Resulting P-values were alpha-corrected (Padj.). Alpha and beta diversity did not differ between rhinoceroses of different age and sex. However, there was a significant difference in beta diversity between fecal samples collected from adult animals at capture and after transport. The most abundant bacterial phyla in samples collected at capture were Firmicutes and Bacteroidetes (85.76%), represented by Lachnospiraceae, Ruminococcaceae and Prevotellaceae families. The phyla Proteobacteria (Padj. = 0.009) and Actinobacteria (Padj. = 0.012), amongst others, increased in relative abundance from capture to after transport encompassing potentially pathogenic bacterial families such as Enterobacteriaceae (Padj. = 0.018) and Pseudomonadaceae (Padj. = 0.022). Important commensals such as Spirochaetes (Padj. = 0.009), Fibrobacteres (Padj. = 0.018) and Lachnospiraceae (Padj. = 0.021) decreased in relative abundance. These results indicate that the stressors associated with capture and transport cause an imbalanced fecal microbiota composition in white rhinoceroses that may lead to potentially infectious intestinal disorders. This imbalance may result from recrudescence of normally innocuous pathogens, increased shedding of pathogens or increased vulnerability to new pathogens.

Mapping the potential for Payments for Ecosystem Services schemes to improve water quality in agricultural catchments: A multi-criteria approach based on the supply and demand concept.

Payments for Ecosystem Services (PES) schemes are an increasingly popular form of catchment management for improving surface water and groundwater quality. In these schemes, downstream water users who are impacted by agricultural diffuse pollution incentivise upstream farmers to adopt better practices. However, this type of scheme will not be successful in all situations, in part, due to a lack of potential for agriculture to improve the suuply of good water quality and/or a lack in demand from downstream users for good water quality. As such, this study aims to present a flexible approach to mapping the potential for PES schemes to improve water quality in agricultural catchments. The approach is based on multi-criteria analysis, with supply and demand as key criteria. It uses expert judgement or current guidance on PES to select supply and demand sub-criteria, expert judgement to weight all criteria through pairwise comparisons and readily available, national datasets to indicate criteria. Once indicator data are normalized, it combines them in a weighted sums analysis and presents results spatially at the national scale, all within a geographical information system. The approach can easily be applied to the country or region of interest by using locally relevant criteria, expert judgement and data. For example, when applied to the situation for river waterbodies in England, supply sub-criteria were the contribution of agriculture to loads of the major pollutants (nitrogen, phosphorus and sediments) and demand sub-criteria were the different downstream water users present (water companies and, tourist and local recreational users). Experts assigned equal weight to supply and demand criteria and the highest weights to sediments and water companies for sub-criteria, respectively. When national scale datasets to indicate these criteria were combined in a weighted sums analysis, it was possible to identify areas of high potential for PES. This would hopefully motivate more detailed research at the individual catchment level into the constraints in linking supply and demand. Three case-study schemes were also examined to show how some of these constraints are being identified and overcome. As such, the approach forms the first tier in a two-tier framework for establishing PES schemes to improve water quality in agricultural catchments.

CHALLENGES TO ANIMAL WELFARE ASSOCIATED WITH CAPTURE AND LONG ROAD TRANSPORT IN BOMA-ADAPTED BLACK (DICEROS BICORNIS) AND SEMI-CAPTIVE WHITE (CERATOTHERIUM SIMUM) RHINOCEROSES.

Capture and transport are part of translocation and expose animals to a variety of stressors that can lead to morbidity and mortality. We aimed to establish a better understanding of the physiologic responses to capture and transport in black (Diceros bicornis) and white (Ceratotherium simum) rhinoceroses in Southern Africa. Fourteen adult black rhinoceroses were transported 600 km by vehicle and 32 white rhinoceroses (24 adults and 8 juveniles) were transported 1,300 km by vehicle. The black rhinoceroses had been wild-caught and boma-adapted over 6 wk prior to the translocation and were only sedated to allow for loading into the transport crates. The white rhinoceroses originated from a game farm and were chemically immobilized from a helicopter and then loaded. Paired blood samples were collected from animals at loading (capture) and after transport and evaluated for changes in clinical chemistry analytes, acute phase reactants, and oxidative stress biomarkers. The Wilcoxon rank sum test was used to compare changes in measured analytes from capture and after transport. All rhinoceroses survived capture and transport. Rhinoceroses experienced total body water loss, mobilization of energy reserves, and muscular damage. Alterations in acute phase reactants suggested that animals mounted a stress response. Oxidative stress was observed in black rhinoceroses. We identified the following challenges to animal welfare during transport: hydration status, energy balance, skeletal muscle fatigue, and stress-induced immunomodulation. Measures to mitigate these challenges, such as administration of fluids, need to be included in the planning of future translocations.

Improvement of waste management practices in a fast expanding sub-megacity in Pakistan, on the basis of qualitative and quantitative indicators.

This paper deals with an analysis of waste management practices in the fast-growing city of Gujranwala with 2.6 million inhabitants, with a fast growing middle income group of 56%, and an urbanization rate of 3.49% per annum. This city is like many other cities in the developing world, characterised by hardly any waste management infrastructure. The study comprises: (1) an inventory of current waste flows, per income group as well as per season, (2) an inventory of waste management shortcomings, (3)) a what-if analysis on the carbon footprint of three waste treatment techniques. The inventory of current waste flows is based on a comprehensive site study involving 776 samples in total. The waste management shortcomings have been qualitatively analysed by Wasteaware model, which deals with physical aspects (public health, environmental control, resource management) as well as governance factors (user & provider inclusivity, financial stability, institutions & policies). The what-if analysis of the carbon footprint has been based on an LCA-based tool. The findings of this study are that: (1) the optimum choice of waste treatment scenario differs for the seasons, (2) the high and middle income groups have nearly half of the share of the waste (3) the Wasteaware system appears to be a powerful tool to communicate the weak spots and to make stakeholders aware of the opportunities for improvement. The novelty of this paper is that it focused on the impact of household income groups in combination with seasonal differences while comparing different waste disposal scenarios.

Impact assessment of energy utilization in agriculture for India and Pakistan.

Sustainable food production is a key concern across countries in South Asia. Most assessments of sustainable agriculture in this region focus on the availability and affordability of resource inputs. However, studies accounting for environmental footprint of agricultural activities in South Asian countries are limited in the existing literature. This paper analyzed the environmental impact of energy utilization in agriculture in India and Pakistan. More specifically, the study analyzes the trends of fuel and electricity consumption for crop production in these countries during a ten-year period between the years 2002 and 2011. Life cycle impact assessment categories including global warming potential, human toxicity, acidification and eutrophication were used to holistically analyze the end-user impact of energy consumption. Results indicated an increase in these impacts for both countries during the study period. On a per hectare basis, the assessed impacts were relatively greater in India than in Pakistan during the study period. The main reason behind larger impacts in India was its significantly greater use of coal for electricity generation. Overall, this study showed that further electrification of agriculture will not necessarily lead to cleaner environment in these countries. Due to high population growth rates, energy consumption for agriculture is expected to grow in these countries in the future. Unless cleaner sources of electricity are used, further energy intensification in agriculture will be detrimental to ecosystem and human health, which in turn will be counterproductive for sustainable agriculture.

Inbreeding depression increases susceptibility to bovine tuberculosis in lions: an experimental test using an inbred-outbred contrast through translocation.

Disease can dramatically influence the dynamics of endangered wildlife populations, especially when they are small and isolated, with increased risk of inbreeding. In Hluhluwe-iMfolozi Park (HiP), a small, enclosed reserve in South Africa, a large lion (Panthera leo) population arose from a small founder group in the 1960s and started showing conspicuous signs of inbreeding. To restore the health status of the HiP lion population, outbred lions were translocated into the existing population. In this study, we determined the susceptibility to bovine tuberculosis (bTB), and the prevalence of antibody to feline viruses of native lions, and compared the findings with those from translocated outbred lions and their offspring. Antibodies to feline herpesvirus, feline calicivirus, feline parvovirus, and feline coronavirus were present in the lion population, but there was no significant difference in antibody prevalence between native and translocated lions and their offspring, and these feline viruses did not appear to have an effect on the clinical health of HiP lions. However, feline immunodeficiency virus (FIV), which was previously absent from HiP, appears to have been introduced into the lion population through translocation. Within 7 yr, the prevalence of antibody to FIV increased up to 42%. Bovine tuberculosis posed a major threat to the inbred native lion population, but not to translocated lions and their offspring. More than 30% of the native lion population died from bTB or malnutrition compared with <2% of the translocated lions and their offspring. We have demonstrated that management of population genetics through supplementation can successfully combat a disease that threatens population persistence. However, great care must be taken not to introduce new diseases into populations through translocation.

Effect of maturational timing on bone mineral content accrual from childhood to adulthood: evidence from 15 years of longitudinal data.

A higher bone mass may reduce the risk of osteoporosis and fractures. The role of maturational timing for optimizing bone mass is controversial due to the lack of prospective evidence from childhood to adulthood. The purpose of this study was to examine the long term relationship between the onset of maturation and bone mineral content (BMC) development. Two hundred thirty individuals (109 males and 121 females) from the Saskatchewan Pediatric Bone Mineral Accrual Study (PBMAS) were classified into maturity groups based on age of peak height velocity. BMC was serially assessed using dual energy X-ray absorptiometry (DXA). Multilevel models were constructed to examine the independent development of BMC by maturity group. When age, body size, and body composition were controlled early maturing females had on average 3-4%, 62.2 ± 16.8g (p<0.05), more total body BMC than their average maturing peers by 20 years of age. In contrast, late maturing females had 50.7 ± 15.6g less total body BMC. No maturational effects were found at either the lumbar spine or femoral neck (p>0.05) in females. There were no significant differences in BMC development at any site among male maturational groups (p>0.05). In this group of healthy participants, there appears to be a sex-dependent effect on the relationship between maturational timing and total body BMC development. Early, average and late maturing males displayed similar BMC development. Late maturing females had compromised BMC accrual compared to their early and average maturing peers.

Molecular characterisation of Mycobacterium bovis isolated from African buffaloes (Syncerus caffer) in Hluhluwe-iMfolozi Park in KwaZulu-Natal, South Africa.

Bovine tuberculosis (BTB), a chronic disease of mammals caused by Mycobacterium bovis, is a threat to South African wildlife. It has been reported that African buffaloes (Syncerus caffer) are reservoir hosts of BTB in South African wildlife populations. This study reports on the molecular identification and typing of 31 M. bovis isolates collected between 1993 and 2008, mainly from buffaloes but also from two lions and a bush pig, in the Hluhluwe-iMfolozi Park (HiP) in KwaZulu-Natal. To study the dynamics of BTB in the buffalo populations, 28 M. bovis isolates from the HiP and epidemiologically related parks were characterised using regions of difference deletion analysis for species identification and spoligotyping, variable number of tandem repeats (VNTR), polymorphic G-C-rich sequences and IS6110 restriction fragment length polymorphism (RFLP) genotyping methods. At least three distinct M. bovis genotypes were found amongst HiP samples. The combination of VNTR typing (using a 16-loci panel) and IS6110 RFLP revealed the presence of three additional genetic profiles in individual buffaloes, demonstrating that the highest level of discrimination was achieved by these typing methods. One of the observed spoligotypes (SB0130) was dominant and represented 75% of isolates from buffaloes. A novel M. bovis spoligotype (SB1474), which is reported for the first time in this study, was observed in 14.3% of isolates from buffaloes. Based on the observed genetic relationships, the findings suggest independent introductions from at least three unrelated sources. These findings improve the knowledge regarding the diversity of circulating M. bovis strains in the HiP.

Low cross-reactivity of T-cell responses against lipids from Mycobacterium bovis and M. avium paratuberculosis during natural infection.

Although CD1 proteins are known to present mycobacterial lipid antigens to T cells, there is little understanding of the in vivo behavior of T cells restricted by CD1a, CD1b and CD1c, and the relative immunogenicity and immunodominance of individual lipids within the total array of lipids that comprise a bacterium. Because bovines express multiple CD1 proteins and are natural hosts of Mycobacterium bovis and Mycobacterium avium paratuberculosis (MAP), we used them as a new animal model of CD1 function. Here, we report the surprisingly divergent responses against lipids produced by these two pathogens during infection. Despite considerable overlap in lipid content, only three out of 69 animals cross-react with M. bovis and MAP total lipid preparations. The unidentified immunodominant compound of M. bovis is a hydrophilic compound, whereas the immunodominant lipid of MAP is presented by CD1b and was identified as glucose monomycolate (GMM). The preferential recognition of GMM antigen by MAP-infected cattle may be explained by the higher expression of GMM by MAP than by M. bovis. The bacterial species-specific nature of the CD1-restricted, adaptive T-cell response affects the approach to development of lipid based immunodiagnostic tests.

Back on the ward. Interview by Sue Learner.

A devastating accident turned Dave Cooper's life upside down, but with the support of his employers he has been able to return to his job as a mental health nurse in a secure unit for offenders.