How technical change has boosted fish aggregation device productivity in the Indian Ocean tuna fishery.

Excess harvesting power can threaten the long-term sustainability of fisheries. Indicators of excess harvesting capacity must include input-output-based estimates of economic production efficiency. The increasing use of drifting Fish-Aggregating-Devices (DFADs) has boosted fishing productivity in high-seas tuna fisheries, perhaps beyond the biological capacity of the stocks, and is an object of global debate. We carried out a Data Envelopment Analysis (DEA) of relative changes in production efficiencies of the French purse-seine fleet targeting tropical tuna in the western Indian Ocean using two fishing strategies: (1) on floating objects (FOB) and (2) free swimming schools (FSC) using tuna catch and effort data spanning 1992-2019. We show that FOB fishing evolved dramatically through time with an estimated change of 3.6%yr-1 (8.0%yr-1 2007-2019), in contrast to 2.1%yr-1 for FSC. While the efficiency level in combining and using inputs has barely changed for FOB fishing, it means that all the growth in productivity comes from technical change for this strategy. The dynamics is different for the FSC with a mixture of innovation and higher efficiency. Immediate plans to improve input-based management in this region are needed to prevent further risks of overfishing to yellowfin (Thunnus albacares) and skipjack (Katsuwonus pelamis) tunas.

Fishing for the Microbiome of Tropical Tuna.

Although tunas represent a significant part of the global fish economy and a major nutritional resource worldwide, their microbiome still remains poorly documented. Here, we conducted an analysis of the taxonomic composition of the bacterial communities inhabiting the gut, skin, and liver of two most consumed tropical tuna species (skipjack and yellowfin), from individuals caught in the Atlantic and Indian oceans. We hypothesized that each organ harbors a specific microbial assemblage whose composition might vary according to different biotic (sex, species) and/or abiotic (environmental) factors. Our results revealed that the composition of the tuna microbiome was totally independent of fish sex, regardless of the species and ocean considered. Instead, the main determinants of observed diversity were (i) tuna species for the gut and (ii) sampling site for the skin mucus layer and (iii) a combination of both parameters for the liver. Interestingly, 4.5% of all amplicon sequence variants (ASV) were shared by the three organs, highlighting the presence of a core-microbiota whose most abundant representatives belonged to the genera Mycoplasma, Cutibacterium, and Photobacterium. Our study also revealed the presence of a unique and diversified bacterial assemblage within the tuna liver, comprising a substantial proportion of potential histamine-producing bacteria, well known for their pathogenicity and their contribution to fish poisoning cases. These results indicate that this organ is an unexplored microbial niche whose role in the health of both the host and consumers remains to be elucidated.

Diving into the vertical dimension of elasmobranch movement ecology.

Knowledge of the three-dimensional movement patterns of elasmobranchs is vital to understand their ecological roles and exposure to anthropogenic pressures. To date, comparative studies among species at global scales have mostly focused on horizontal movements. Our study addresses the knowledge gap of vertical movements by compiling the first global synthesis of vertical habitat use by elasmobranchs from data obtained by deployment of 989 biotelemetry tags on 38 elasmobranch species. Elasmobranchs displayed high intra- and interspecific variability in vertical movement patterns. Substantial vertical overlap was observed for many epipelagic elasmobranchs, indicating an increased likelihood to display spatial overlap, biologically interact, and share similar risk to anthropogenic threats that vary on a vertical gradient. We highlight the critical next steps toward incorporating vertical movement into global management and monitoring strategies for elasmobranchs, emphasizing the need to address geographic and taxonomic biases in deployments and to concurrently consider both horizontal and vertical movements.

Schooling in habitats with aggregative sites: The case of tropical tuna and floating objects.

Many marine and terrestrial species live in groups, whose sizes and dynamics can vary depending on the type and strength of their social interactions. Typical examples of such groups in vertebrates are schools of fish or flocks of bird. Natural habitats can encompass a wide range of spatial heterogeneities, which can also shape the structure of animal groups, depending on the interplay between the attraction/repulsion of environmental cues and social interactions. A key issue in modern applied ecology and conservation is the need to understand the relationship between these ethological and ecological scales in order to account for the social behaviour of animals in their natural environments. Here, we introduce a modeling approach which studies animal groups within heterogeneous habitats constituted by a set of aggregative sites. The model properties are investigated considering the case study of tropical tuna schools and their associative behavior with floating objects, a question of global concern, given the thousands of floating objects deployed by industrial tropical tuna fisheries worldwide. The effects of increasing numbers of aggregative sites (floating objects) on tuna schools are studied. This study offers a general modeling framework to study social species in their habitats, accounting for both ethological and ecological drivers of animal group dynamics.

Tuna behaviour at anchored FADs inferred from Local Ecological Knowledge (LEK) of pole-and-line tuna fishers in the Maldives.

The Maldives tuna fishery landings in 2018 were 148, 000 t and accounted for nearly a quarter of the global pole-and-line tuna catch. This fishery partially relies on a network of 55 anchored fish aggregating devices (AFADs) deployed around the archipelago. About one-third of the total pole-and-line tuna catch is harvested at AFADs. Although the AFAD fishery has existed for 35 years, knowledge on the behaviour of tuna in the AFAD array is still limited, precluding the development of science-based fishery management. In this study, local ecological knowledge (LEK) of fishers was used to improve our understanding of tuna behaviour, through personal interviews of 54 pole-and-line fishers from different parts of the archipelago. Interview results suggest that during the northeast monsoon tuna are more abundant on the eastern side of the Maldives, while during the southwest monsoon they are more abundant on the western side of the Maldives. Most fishers believed that tuna tend to stay at the AFADs for 3 to 6 days and remain within 2 miles from the AFADs when they are associated. Fishers believe that strong currents is the main factor for tuna departure from AFADs, though high sea surface temperatures and stormy conditions were also thought to contribute to departures. Moderate currents are believed to be a favourable condition to form aggregations at the AFADs while other factors such as suitable temperature, prey and attractants enhance this aggregation. Fishers also believe that there are multiple schools segregated according to size and species at AFADs and that catchability is higher at dawn and in the late afternoon when the tuna occur shallower in the water column. This study is an important step towards engaging the Maldivian tuna fishers into a science-based fishery management.

Recent expansion of marine protected areas matches with home range of grey reef sharks.

Dramatic declines in reef shark populations have been documented worldwide in response to human activities. Marine Protected Areas (MPAs) offer a useful mechanism to protect these species and their roles in coral reef ecosystems. The effectiveness of MPAs notably relies on compliance together with sufficient size to encompass animal home range. Here, we measured home range of 147 grey reef sharks, Carcharhinus amblyrhynchos, using acoustic telemetry in New Caledonia. The distribution of home range was then compared to local MPA sizes. We report a home range of 12 km2 of reef for the species with strong differences between adult males (21 km2), adult females (4.4 km2) and juveniles (6.2 km2 for males, 2.7 km2 for females). Whereas local historic MPA size seemed adequate to protect reef shark home range in general, these were clearly too small when considering adult males only, which is consistent with the reported failure of MPAs to protect sharks in New Caledonia. Fortunately, the recent implementation of several orders of magnitude larger MPAs in New Caledonia and abroad show that recent Indo-Pacific MPAs are now sufficiently large to protect the home ranges of this species, including males, across its geographical range. However, protection efforts are concentrated in a few regions and cannot provide adequate protection at a global scale.

Does the Composition of the Gut Bacteriome Change during the Growth of Tuna?

In recent years, a growing number of studies sought to examine the composition and the determinants of the gut microflora in marine animals, including fish. For tropical tuna, which are among the most consumed fish worldwide, there is scarce information on their enteric bacterial communities and how they evolve during fish growth. In this study, we used metabarcoding of the 16S rDNA gene to (1) describe the diversity and composition of the gut bacteriome in the three most fished tuna species (skipjack, yellowfin and bigeye), and (2) to examine its intra-specific variability from juveniles to larger adults. Although there was a remarkable convergence of taxonomic richness and bacterial composition between yellowfin and bigeyes tuna, the gut bacteriome of skipjack tuna was distinct from the other two species. Throughout fish growth, the enteric bacteriome of yellowfin and bigeyes also showed significant modifications, while that of skipjack tuna remained relatively homogeneous. Finally, our results suggest that the gut bacteriome of marine fish may not always be subject to structural modifications during their growth, especially in species that maintain a steady feeding behavior during their lifetime.

Effects of habitat modifications on the movement behavior of animals: the case study of Fish Aggregating Devices (FADs) and tropical tunas.

BACKGROUND: Aggregation sites represent important sources of environmental heterogeneity and can modify the movement behavior of animals. When these sites are artificially established through anthropogenic actions, the consequent alterations to animal movements may impact their ecology with potential implications for their fitness. Floating objects represent important sources of habitat heterogeneity for tropical tunas, beneath which these species naturally aggregate in large numbers. Man-made floating objects, called Fish Aggregating Devices (FAD), are used by fishers on a massive scale to facilitate fishing operations. In addition to the direct impacts that fishing with FADs has on tuna populations, assessing the effects of increasing the numbers of FADs on the ecology of tuna is key for generating sound management and conservation measures. METHODS: This study investigates the effects of increasing numbers of FADs (aggregation sites) on the movements of tunas, through the comparison of electronic tagging data recorded from 146 individuals tunas (yellowfin tuna, Thunnus albacares, and skipjack tuna, Katsuwonus pelamis) tagged in three instrumented anchored FAD arrays (Mauritius, Oahu-Hawaii and Maldives), that differed according to their distances among neighboring FADs. The effect of increasing inter-FAD distances is studied considering a set of indices (residence times at FADs and absence (travel) times between two visits at FADs) and their trends. RESULTS: When inter-FAD distances decrease, tuna visit more FADs (higher connectivity between FADs), spend less time travelling between FADs and more time associated with them. The trends observed for the absence (travel) times appear to be compatible with a random-search component in the movement behaviour of tunas. Conversely, FAD residence times showed opposite trends, which could be a result of social behavior and/or prey availability. CONCLUSION: Our results provide the first evidence of changes in tuna associative behavior for increasing FAD densities. More generally, they highlight the need for comparing animal movements in heterogeneous habitats in order to improve understanding of the impacts of anthropogenic habitat modifications on the ecology of wild animals.

Drifting along in the open-ocean: The associative behaviour of oceanic triggerfish and rainbow runner with floating objects.

Multispecies aggregations at floating objects are a common feature throughout the world's tropical and subtropical oceans. The evolutionary benefits driving this associative behaviour of pelagic fish remains unclear and information on the associative behaviour of non-tuna species remains scarce. This study investigated the associative behaviour of oceanic triggerfish (Canthidermis maculata) and rainbow runner (Elagatis bipinnulata), two major bycatch species in the tropical tuna purse seine fishery, at floating objects in the western Indian Ocean. A total of 24 rainbow runner and 46 oceanic triggerfish were tagged with acoustic transmitters at nine drifting FADs equipped with satellite linked receivers. Both species remained associated with the same floating object for extended periods; Kaplan-Meier survival estimates (considering the censored residence time due to equipment failure and fishing) suggested that mean residence time by rainbow runner and oceanic triggerfish was of 94 and 65 days, respectively. During daytime, the two species increased their home range as they typically performed short excursions (<2 h) away from the floating objects. Rainbow runner performed more excursions per unit time than oceanic triggerfish; the mean excursion index was 0.86 (±0.8 SD) for oceanic triggerfish and 1.31 (±1.1 SD) for rainbow runner. Ambient light intensity appears to be the stimulus triggering the onset and end of the associative modes. The observed prolonged residency of these two major bycatch species suggests that they are more vulnerable to the tropical tuna purse seine gear than the targeted tuna species.

Global spatial risk assessment of sharks under the footprint of fisheries.

Effective ocean management and the conservation of highly migratory species depend on resolving the overlap between animal movements and distributions, and fishing effort. However, this information is lacking at a global scale. Here we show, using a big-data approach that combines satellite-tracked movements of pelagic sharks and global fishing fleets, that 24% of the mean monthly space used by sharks falls under the footprint of pelagic longline fisheries. Space-use hotspots of commercially valuable sharks and of internationally protected species had the highest overlap with longlines (up to 76% and 64%, respectively), and were also associated with significant increases in fishing effort. We conclude that pelagic sharks have limited spatial refuge from current levels of fishing effort in marine areas beyond national jurisdictions (the high seas). Our results demonstrate an urgent need for conservation and management measures at high-seas hotspots of shark space use, and highlight the potential of simultaneous satellite surveillance of megafauna and fishers as a tool for near-real-time, dynamic management.

Vulnerability of the Oceanic Whitetip Shark to Pelagic Longline Fisheries.

A combination of fisheries dependent and independent data was used to assess the vulnerability of the oceanic whitetip shark to pelagic longline fisheries. The Brazilian tuna longline fleet, operating in the equatorial and southwestern Atlantic, is used as a case study. Fisheries dependent data include information from logbooks (from 1999 to 2011) and on-board observers (2004 to 2010), totaling 65,277 pelagic longline sets. Fisheries independent data were obtained from 8 oceanic whitetip sharks tagged with pop-up satellite archival tags in the area where longline fleet operated. Deployment periods varied from 60 to 178 days between 2010 and 2012. Tagging and pop-up sites were relatively close to each other, although individuals tended to travel long distances before returning to the tagging area. Some degree of site fidelity was observed. High utilization hotspots of tagged sharks fell inside the area under strongest fishing pressure. Despite the small sample size, a positive correlation between tag recorded information and catch data was detected. All sharks exhibited a strong preference for the warm and shallow waters of the mixed layer, spending on average more than 70% of the time above the thermocline and 95% above 120 m. Results indicate that the removal of shallow hooks on longline gear might be an efficient mitigation measure to reduce the bycatch of this pelagic shark species. The work also highlights the potential of tagging experiments to provide essential information for the development of spatio-temporal management measures.

A Methodological Framework to Estimate the Site Fidelity of Tagged Animals Using Passive Acoustic Telemetry.

The rapid expansion of the use of passive acoustic telemetry technologies has facilitated unprecedented opportunities for studying the behavior of marine organisms in their natural environment. This technological advance would greatly benefit from the parallel development of dedicated methodologies accounting for the variety of timescales involved in the remote detection of tagged animals related to instrumental, environmental and behavioral events. In this paper we propose a methodological framework for estimating the site fidelity ("residence times") of acoustic tagged animals at different timescales, based on the survival analysis of continuous residence times recorded at multiple receivers. Our approach is validated through modeling and applied on two distinct datasets obtained from a small coastal pelagic species (bigeye scad, Selar crumenophthalmus) and a large, offshore pelagic species (yellowfin tuna, Thunnus albacares), which show very distinct spatial scales of behavior. The methodological framework proposed herein allows estimating the most appropriate temporal scale for processing passive acoustic telemetry data depending on the scientific question of interest. Our method provides residence times free of the bias inherent to environmental and instrumental noise that can be used to study the small scale behavior of acoustic tagged animals. At larger timescales, it can effectively identify residence times that encompass the diel behavioral excursions of fish out of the acoustic detection range. This study provides a systematic framework for the analysis of passive acoustic telemetry data that can be employed for the comparative study of different species and study sites. The same methodology can be used each time discrete records of animal detections of any nature are employed for estimating the site fidelity of an animal at different timescales.

The aggregation of tuna around floating objects: what could be the underlying social mechanisms?

Several empirical and theoretical studies have shown how the exploitation of food sources, the choice of resting sites or other types of collective decision-making in heterogeneous environments are facilitated and modulated by social interactions between conspecifics. It is well known that many pelagic fishes live in schools and that this form of gregarious behavior provides advantages in terms of food intake and predator avoidance efficiency. However, the influence of social behavior in the formation of aggregations by tuna under floating objects (FOBs) is poorly understood. In this work, we investigated the collective patterns generated by different theoretical models, which either include or exclude social interactions between conspecifics, in the presence of two aggregation sites. The resulting temporal dynamics and distributions of populations were compared to in situ observations of tuna behavior. Our work suggests that social interactions should be incorporated in aggregative behavior to reproduce the temporal patterns observed in the field at both the individual and the group level, challenging the common vision of tuna aggregations around FOBs. Our study argues for additional data to further demonstrate the role of social behavior in the dynamics of these fish aggregations. Understanding the interplay between environmental and social factors in the associative behavior of fish with FOBs is necessary to assess the consequences of the widespread deployment of artificial FOBs by fishermen.

Quantifying the interplay between environmental and social effects on aggregated-fish dynamics.

Demonstrating and quantifying the respective roles of social interactions and external stimuli governing fish dynamics is key to understanding fish spatial distribution. If seminal studies have contributed to our understanding of fish spatial organization in schools, little experimental information is available on fish in their natural environment, where aggregations often occur in the presence of spatial heterogeneities. Here, we applied novel modeling approaches coupled to accurate acoustic tracking for studying the dynamics of a group of gregarious fish in a heterogeneous environment. To this purpose, we acoustically tracked with submeter resolution the positions of twelve small pelagic fish (Selar crumenophthalmus) in the presence of an anchored floating object, constituting a point of attraction for several fish species. We constructed a field-based model for aggregated-fish dynamics, deriving effective interactions for both social and external stimuli from experiments. We tuned the model parameters that best fit the experimental data and quantified the importance of social interactions in the aggregation, providing an explanation for the spatial structure of fish aggregations found around floating objects. Our results can be generalized to other gregarious species and contexts as long as it is possible to observe the fine-scale movements of a subset of individuals.