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1.
Phys Rev E ; 109(5-1): 054313, 2024 May.
Artigo em Inglês | MEDLINE | ID: mdl-38907492

RESUMO

The random language model [Phys. Rev. Lett. 122, 128301 (2019)0031-900710.1103/PhysRevLett.122.128301] is an ensemble of stochastic context-free grammars, quantifying the syntax of human and computer languages. The model suggests a simple picture of first-language learning as a type of annealing in the vast space of potential languages. In its simplest formulation, it implies a single continuous transition to grammatical syntax, at which the symmetry among potential words and categories is spontaneously broken. Here this picture is scrutinized by considering its robustness against extensions of the original model, and trajectories through parameter space different from those originally considered. It is shown here that (i) the scenario is robust to explicit symmetry breaking, an inevitable component of learning in the real world, and (ii) the transition to grammatical syntax can be encountered by fixing the deep (hidden) structure while varying the surface (observable) properties. It is also argued that the transition becomes a sharp thermodynamic transition in an idealized limit. Moreover, comparison with human data on the clustering coefficient of syntax networks suggests that the observed transition is equivalent to that normally experienced by children at age 24 months. The results are discussed in light of the theory of first-language acquisition in linguistics, and recent successes in machine learning.

2.
Phys Rev E ; 109(4-1): 044105, 2024 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-38755882

RESUMO

Understanding the emergent behavior of chemical reaction networks (CRNs) is a fundamental aspect of biology and its origin from inanimate matter. A closed CRN monotonically tends to thermal equilibrium, but when it is opened to external reservoirs, a range of behaviors is possible, including transition to a new equilibrium state, a nonequilibrium state, or indefinite growth. This study shows that slowly driven CRNs are governed by the conserved quantities of the closed system, which are generally far fewer in number than the species. Considering both deterministic and stochastic dynamics, a universal slow-dynamics equation is derived with singular perturbation methods and is shown to be thermodynamically consistent. The slow dynamics is highly robust against microscopic details of the network, which may be unknown in practical situations. In particular, nonequilibrium states of realistic large CRNs can be sought without knowledge of bulk reaction rates. The framework is successfully tested against a suite of networks of increasing complexity and argued to be relevant in the treatment of open CRNs as chemical machines.

3.
Phys Rev E ; 104(2-1): 024305, 2021 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-34525643

RESUMO

Biological systems need to react to stimuli over a broad spectrum of timescales. If and how this ability can emerge without external fine-tuning is a puzzle. We consider here this problem in discrete Markovian systems, where we can leverage results from random matrix theory. Indeed, generic large transition matrices are governed by universal results, which predict the absence of long timescales unless fine-tuned. We consider an ensemble of transition matrices and motivate a temperature-like variable that controls the dynamic range of matrix elements, which we show plays a crucial role in the applicability of the large matrix limit: as the dynamic range increases, a phase transition occurs whereby the random matrix theory result is avoided, and long relaxation times ensue, in the entire "ordered" phase. We furthermore show that this phase transition is accompanied by a drop in the entropy rate and a peak in complexity, as measured by predictive information [Bialek, Nemenman, and Tishby Neural Comput. 13, 2409 (2001)NEUCEB0899-766710.1162/089976601753195969]. Extending the Markov model to a Hidden Markov model (HMM), we show that observable sequences inherit properties of the hidden sequences, allowing HMMs to be understood in terms of more accessible Markov models. We then apply our findings to fMRI data from 820 human subjects scanned at wakeful rest. We show that the data can be quantitatively understood in terms of the random model, and that brain activity lies close to the phase transition when engaged in unconstrained, task-free cognition-supporting the brain criticality hypothesis in this context.

4.
Phys Rev E ; 101(4-1): 043002, 2020 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-32422831

RESUMO

Plasticity in amorphous solids is mediated by localized quadrupolar instabilities, but the mechanism by which an amorphous solid eventually fails or melts is debated. In this work we argue that these phenomena can be investigated in the model problem of an elastic continuum with quadrupolar defects, at finite temperature. This problem is posed and the collective behavior of the defects is analytically investigated. Using both renormalization group and field-theoretic techniques, it is found that the model has a yielding/melting transition of spinodal type.

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