Habitat-related variability in the morphological and taxonomic diversity of microbial communities in two Hungarian epigenic karst caves.

The physical and chemical characteristics of the bedrock, along with the geological and hydrological conditions of karst caves may influence the taxonomic and functional diversity of prokaryotes. Most studies so far have focused on microbial communities of caves including only a few samples and have ignored the chemical heterogeneity of different habitat types such as sampling sites, dripping water, carbonate precipitates, cave walls, cave sediment and surface soils connected to the caves. The aim of the present study was to compare the morphology, the composition and physiology of the microbiota in caves with similar environmental parameters (temperature, host rock, elemental and mineral composition of speleothems) but located in different epigenic karst systems. Csodabogyós Cave and Baradla Cave (Hungary) were selected for the analysis of bacterial and archaeal communities using electron microscopy, amplicon sequencing, X-ray diffraction, and mass spectroscopic techniques. The microbial communities belonged to the phyla Pseudomonadota, Acidobacteriota, Nitrospirota and Nitrososphaerota, and they showed site-specific variation in composition and diversity. The results indicate that morphological and physiological adaptations provide survival for microorganisms according to the environment. In epigenic karst caves, prokaryotes are prone to increase their adsorption surface, cooperate in biofilms, and implement chemolithoautotrophic growth with different electron-donors and acceptors available in the microhabitats.

Nanoscale Pathway of Modern Dolomite Formation in a Shallow, Alkaline Lake.

Dolomite [CaMg(CO3)2] formation under Earth surface conditions is considered largely inhibited, yet protodolomite (with a composition similar to dolomite but lacking cation ordering), and in some cases also dolomite, was documented in modern shallow marine and lacustrine, evaporative environments. Authigenic carbonate mud from Lake Neusiedl, a shallow, episodically evaporative lake in Austria consists mainly of Mg-calcite with zoning of Mg-rich and Mg-poor regions in µm-sized crystals. Within the Mg-rich regions, high-resolution transmission electron microscopy revealed < 5-nm-sized domains with dolomitic ordering, i.e., alternating lattice planes of Ca and Mg, in coherent orientation with the surrounding protodolomite. The calcite with less abundant Mg does not show such domains but is characterized by pitted surfaces and voids as a sign of dissolution. These observations suggest that protodolomite may overgrow Mg-calcite as a result of the changing chemistry of the lake water. During this process, oscillating concentrations (in particular of Mg and Ca) at the recrystallization front may have induced dissolution of Mg-calcite and growth of nanoscale domains of dolomite, which subsequently became incorporated as ordered domains in coherent orientation within less ordered regions. It is suggested that this crystallization pathway is capable of overcoming, at least at the nanoscale, the kinetic barrier to dolomite formation.

Combined use of conventional and clumped carbonate stable isotopes to identify hydrothermal isotopic alteration in cave walls.

Alteration of conventional carbonate stable isotopes (δ18O, δ13C) in cave walls has been shown to be a useful tool to identify cave formation driven by deep-seated processes, i.e., hypogene karstification. If combined with a prior information on the paleowater stable isotope composition, further insights can be obtained on the temperature and the source of the paleowater. Clumped isotope composition (Δ47) of carbonates is an independent measurement of temperature, and if combined with the conventional stable isotopes, can provide information on the paleowater stable isotope composition. On the example of Provalata Cave (N. Macedonia), we apply for the first time, both conventional and clumped stable isotope analysis, and identify two different isotope alteration trends, reflecting two distinct hydrothermal events: an older, hotter one, where isotope alteration was likely related to isotope diffusion, lowering the δ18O values of the carbonate; and a younger one, related to the cave formation by low-temperature CO2-rich thermal waters, with dissolution-reprecipitation as the alteration mechanism, causing decrease in δ18O values, and unexpected increase in δ13C values. The findings are further corroborated by additional insight from optical petrography and cathodoluminescence microscopy, as well as fluid inclusion analysis of secondary calcite crystals related to the cave forming phase.

Bacterial and abiogenic carbonates formed in caves-no vital effect on clumped isotope compositions.

Speleothems (dominated by cave-hosted carbonate deposits) are valuable archives of paleoclimate conditions. As such, they are potential targets of clumped isotope analyses that may yield quantified data about past temperature variations. Clumped isotope analyses of stalagmites, however, seldom provide useful temperature values due to various isotope fractionation processes. This study focuses on the determination of the microbially induced vital effect, i.e., the isotope fractionation processes related to bacterial carbonate production. A cave site with biologically mediated amorphous calcium carbonate precitation was selected as a natural laboratory. Calcite deposits were farmed under a UV lamp to prevent bacterial activity, as well as under control conditions. Microbiological analyses and morphological investigations using scanning electron microscopy showed that the UV lamp treatment effectively reduced the number of bacterial cells, and that bacterial carbonate production strongly influenced the carbonate's morphology. Stable oxygen isotope analyses of calcite and drip waters, as well as clumped isotope measurements revealed that, although most of the studied carbonates formed close to oxygen isotope equilibrium, clumped isotope Δ47 values varied widely from equilibrium to strongly fractionated data. Site-specific kinetic fractionations played a dominant role in the distribution of Δ47 values, whereas bacterial carbonate production did not result in a detectable clumped isotope effect.

Cave bacteria-induced amorphous calcium carbonate formation.

Amorphous calcium carbonate (ACC) is a precursor of crystalline calcium carbonates that plays a key role in biomineralization and polymorph evolution. Here, we show that several bacterial strains isolated from a Hungarian cave produce ACC and their extracellular polymeric substance (EPS) shields ACC from crystallization. The findings demonstrate that bacteria-produced ACC forms in water-rich environment at room temperature and is stable for at least half year, which is in contrast to laboratory-produced ACC that needs to be stored in a desiccator and kept below 10 °C for avoiding crystallization. The ACC-shielding EPS consists of lipids, proteins, carbohydrates and nucleic acids. In particular, we identified large amount of long-chain fatty acid components. We suggest that ACC could be enclosed in a micella-like formula within the EPS that inhibits water infiltration. As the bacterial cells lyse, the covering protective layer disintegrates, water penetrates and the unprotected ACC grains crystallize to calcite. Our study indicates that bacteria are capable of producing ACC, and we estimate its quantity in comparison to calcite presumably varies up to 20% depending on the age of the colony. Since diverse bacterial communities colonize the surface of cave sediments in temperate zone, we presume that ACC is common in these caves and its occurrence is directly linked to bacterial activity and influences the geochemical signals recorded in speleothems.

A nanocrystalline monoclinic CaCO3 precursor of metastable aragonite.

Despite its thermodynamical metastability at near-surface conditions, aragonite is widespread in marine and terrestrial sediments. It abundantly forms in living organisms, and its abiotic formation is favored in waters of a Mg2+/Ca2+ ratio > 1.5. Here, we provide crystallographic evidence of a nanocrystalline CaCO3 polymorph, which precipitates before aragonite in a cave. The new phase, which we term monoclinic aragonite (mAra), is crystallographically related to ordinary, orthorhombic aragonite. Electron diffraction tomography combined with structure determination demonstrates that mAra has a layered aragonite structure, in which some carbonates can be replaced by hydroxyls and up to 10 atomic % of Mg can be incorporated. The diagnostic electron diffraction features of mAra are diffuse scattering and satellite reflections along aragonite {110}. Similar features have previously been reported-although unrecognized-from biogenic aragonite formed in stromatolites, mollusks, and cyanobacteria as well as from synthetic material. We propose that mAra is a widespread crystalline CaCO3 that plays a hitherto unrecognized key role in metastable aragonite formation.

Coupled European and Greenland last glacial dust activity driven by North Atlantic climate.

Centennial-scale mineral dust peaks in last glacial Greenland ice cores match the timing of lowest Greenland temperatures, yet little is known of equivalent changes in dust-emitting regions, limiting our understanding of dust-climate interaction. Here, we present the most detailed and precise age model for European loess dust deposits to date, based on 125 accelerator mass spectrometry 14C ages from Dunaszekcso, Hungary. The record shows that variations in glacial dust deposition variability on centennial-millennial timescales in east central Europe and Greenland were synchronous within uncertainty. We suggest that precipitation and atmospheric circulation changes were likely the major influences on European glacial dust activity and propose that European dust emissions were modulated by dominant phases of the North Atlantic Oscillation, which had a major influence on vegetation and local climate of European dust source regions.

2 H/1 H measurements of amphiboles and nominally anhydrous minerals (clinopyroxene, garnet and diamond) using high-temperature continuous flow elemental analyser/pyrolysis/isotope ratio mass spectrometry.

RATIONALE: We have used a high-precision, high-efficiency method for the measurement of the 2 H/1 H ratios of hydrous silicates (amphiboles) and nominally anhydrous minerals (NAM) such as clinopyroxene, garnet and diamond, which are usually extremely resistant to pyrolysis. This opens up new fields of investigation to better understand the conditions of formation for deep-Earth minerals. METHODS: The technique described here involves Isotope Ratio Mass Spectrometry (IRMS) on-line in continuous flow mode with an Elemental Analyser (EA) using "purge and trap" technology rather than separation by conventional packed column gas chromatography (GC). The system is equipped with a special high-temperature furnace reaching 1500°C, with a longer hot zone and improved temperature stability. Emphasis is put on the efficiency of the system to reliably pyrolyse refractory minerals difficult to analyse with other conventional systems. RESULTS: While conventional systems usually fail to generate hydrogen suitable for isotopic analyses, with the technique presented here we were able to measure 2 H/1 H ratios from four diamond samples (δ2 H = -60, -77, -84 and -79‰ V-SMOW; average SD = 4.5‰; n = 2), three garnet samples (δ2 H from -70 to -63‰), and nine clinopyroxenes (δ2 H from -92 to -58‰) associated with seven amphiboles (δ2 H from -76 to -27‰) from single mantle rock. CONCLUSIONS: The possibility of using such a system to reliably measure 2 H/1 H ratios from refractory minerals, which are usually extremely difficult to analyse, offers a new tool of investigation for providing us with unrivaled clues to study the deep interiors of Earth.

Formation of amorphous calcium carbonate in caves and its implications for speleothem research.

Speleothem deposits are among the most valuable continental formations in paleoclimate research, as they can be dated using absolute dating methods, and they also provide valuable climate proxies. However, alteration processes such as post-depositional mineralogical transformations can significantly influence the paleoclimatic application of their geochemical data. An innovative sampling and measurement protocol combined with scanning and transmission electron microscopy, X-ray diffraction and Fourier transform infrared spectroscopy is presented, demonstrating that carbonate precipitating from drip water in caves at ~10 °C contains amorphous calcium carbonate (ACC) that later transforms to nanocrystalline calcite. Stable oxygen isotope fractionations among calcite, ACC and water were also determined, proving that ACC is 18O-depleted (by >2.4 ± 0.8‰) relative to calcite. This, in turn, has serious consequences for speleothem-based fluid inclusion research as closed system transformation of ACC to calcite may induce a negative oxygen isotope shift in fluid inclusion water, resulting in deterioration of the original compositions. ACC formation increases the speleothems' sensitivity to alteration as its interaction with external solutions may result in the partial loss of original proxy signals. Mineralogical analysis of freshly precipitating carbonate at the studied speleothem site is suggested in order to determine the potential influence of ACC formation.

Hydrogen isotope type-curves of very hot crude oils.

Several crude oil accumulations in the Pannonian Basin are trapped in uncommonly hot (>170°C) reservoirs. Their maturities range from mature to very mature on the basis of cracking parameters of their biological marker homologous series (ratio of products to reactants). A stable carbon isotopic study of these oils, poor in biological markers commonly used for correlation purposes, did not provide a reliable oil-to-oil correlation. As an alternative tool, the hydrogen isotope compositions of oil fractions separated on the basis of different polarities were measured, and hydrogen isotope type-curves were generated for a set of mature to very mature crude oil samples. This method of presenting hydrogen isotope composition of fractions as type-curves is novel. Nineteen samples (17 crude oils from SE-Hungary, 1 oil condensate and 1 artificial oil) were chosen for the present study. The aim was to examine the applicability of hydrogen isotope type-curves in oil-to-oil correlation and to test the simultaneous application of carbon and hydrogen isotope type-curves in the field of petroleum geochemistry. We have shown that, although the conventionally used co-variation plots proved to be inadequate for the correlation of these hot and mature oils, the simultaneous use of carbon and the newly introduced hydrogen isotope type-curves allows us to group and distinguish oils of different origins.

Empirical equations for the temperature dependence of calcite-water oxygen isotope fractionation from 10 to 70°C.

Although the temperature dependence of calcite-water oxygen isotope fractionation seems to have been well established by numerous empirical, experimental and theoretical studies, it is still being discussed, especially due to the demand for increased accuracy of paleotemperature calculations. Experimentally determined equations are available and have been verified by theoretical calculations (considered as representative of isotopic equilibrium); however, many natural formations do not seem to follow these relationships implying either that existing fractionation equations should be revised, or that carbonate deposits are seriously affected by kinetic and solution chemistry effects, or late-stage alterations. In order to test if existing fractionation-temperature relationships can be used for natural deposits, we have studied calcite formations precipitated in various environments by means of stable isotope mass spectrometry: travertines (freshwater limestones) precipitating from hot and warm waters in open-air or quasi-closed environments, as well as cave deposits formed in closed systems. Physical and chemical parameters as well as oxygen isotope composition of water were monitored for all the investigated sites. Measuring precipitation temperatures along with oxygen isotope compositions of waters and calcites yielded empirical environment-specific fractionation-temperature equations: [1] 1000 · lnα = 17599/T - 29.64 [for travertines with a temperature range of 30 to 70°C] and [2] 1000 · lnα = 17500/T - 29.89 [for cave deposits for the range 10 to 25°C]. Finally, based on the comparison of literature data and our results, the use of distinct calcite-water oxygen isotopic fractionation relationships and application strategies to obtain the most reliable paleoclimate information are evaluated.

Bronze Age volcanic event recorded in stalagmites by combined isotope and trace element studies.

Stable isotope analyses of speleothems (carbonate deposits formed in caves) have been widely used to reconstruct paleoenvironmental conditions. Recent improvements in geochemical techniques have enabled us to analyze climate-influenced deposits at high temporal resolution so that hitherto unrecognized environmental conditions may be identified. Stable H, C and O isotope analyses on carbonate and inclusion water have been combined with multicollector inductively coupled plasma mass spectrometry (MC-ICP-MS) age dating and laser-ablation ICP-MS trace element analyses on a stalagmite from southern Hungary. The study reveals significant changes in chemical and isotopic compositions of the speleothem between approx. 3800 and 3500 years BP ('Before Present') indicating coupled changes in the temperature and precipitation regime under which the speleothem formed. Stable isotopic and trace element correlations within this time period correlate with similar studies of stalagmites of comparable age from the Alpine-Mediterranean region. Our studies suggest that traces of deposition of volcanic dust, possibly related to the Thera eruption of Santorini (Greece) ca. 1650 BC (approximately 3650 BP), and environmental changes can be detected at a distance of several thousand kilometers.

Stable isotope geochemistry of calcrete nodules and septarian concretions in a Quaternary 'red clay' paleovertisol from Hungary.

Calcrete nodules and concretions in unusually large amounts are embedded in the Quaternary clay-rich (Vertisol-type) 'red clay' soil-sedimentary complex at the pediment of the Mátra Mountains (Hungary). Stable isotope signatures were studied in nodules and septarian concretions, uncommon due to their several millimeter sized calcite crystals filling voids and fractures, to reveal their origin. The isotope composition of calcrete covers a wide range: delta18O=-5.9 to-10.4 per thousand and delta13C=-8.9 to-12.3 per thousand (vs. V-PDB). Isotope compositions support pedogenic (sensu stricto) and/or shallow groundwater origin for the calcrete nodules and concretions, the role of 'evolved' (isotopically modified) groundwaters in the formation of secondary carbonate was possibly subordinate. Late-stage, large, Mn-rich euhedral calcite crystals in concretions have the lowest delta13C values, which are interpreted as a result of larger contribution of isotopically light organic carbon due to decomposition of organic matter under reducing conditions. Precipitation of late calcite crystals in concretions occurred in early diagenetic environment after shallow burial of the 'red clay' paleovertisol.

Stable isotope compositions of CO(2) in background air and at polluted sites in Hungary.

CO(2) samples were collected from air at three sites in Hungary for comparison of polluted and background areas. In order to reduce the uncertainties caused by the varying amount of N(2)O, a gas chromatography (GC)-based vacuum separation was applied. The reliability of the procedure was demonstrated by careful standardization and comparison with global network data. The stable isotope data show complex diurnal and seasonal variations that can be explained by fractionations during photosynthesis and respiration. The isotopic characteristics of pollution-derived (anthropogenic) and biogenic CO(2) appear to be indistinguishable at the study sites. However, the sites at unpolluted areas reveal a seasonal variation in the carbon isotope composition of biogenic CO(2) that may be related to changes in soil biogenic activities. The atmospheric background CO(2) shows constant delta(13)C in the region. Finally, the study demonstrates the need for careful standardization of sampling in order to make the data obtained from different sampling systems comparable.