Serum metabolomics using ultra performance liquid chromatography coupled to mass spectrometry in lactating dairy cows following a single dose of sporidesmin.

INTRODUCTION: Photosensitization is a common clinical sign in cows suffering from liver damage caused by the mycotoxin sporidesmin. This disease, called facial eczema (FE), is of major importance in New Zealand. Current techniques for diagnosing animals with subclinical sporidesmin-induced liver damage (i.e. without photosensitization) are nonspecific. In addition, little is known of the mechanisms involved in sporidesmin resistance, nor the early effects seen following low-dose sporidesmin intoxication. OBJECTIVE: The objective of this study was to identify individual metabolites or metabolic profiles that could be used as serum markers for early stage FE in lactating cows. METHODS: Results are presented from a 59-day sporidesmin challenge in Friesian-cross dairy cows. Serum metabolite profiles were obtained using reversed phase ultra-performance liquid chromatography (UPLC) electrospray ionization mass spectrometry (MS) and UPLC tandem MS. Multivariate and time series analyses were used to assess the data. RESULTS: Statistical analysis, both with and without the temporal component, could distinguish the profiles of animals with clinical signs from the others, but not those affected subclinically. An increase in the concentrations of a combination of taurine- and glycine-conjugated secondary bile acids (BAs) was the most likely cause of the separation. This is the first time that MS methods have been applied to FE and that bile acids changes have been detected in cattle exposed to sporidesmin. CONCLUSIONS: It is well known that BA concentrations increase during cholestasis due to damage to bile ducts and leakage of the bile. This is the first study to investigate metabolomic changes in serum following a sporidesmin challenge. Further work to establish the significance of the elevation of individual BAs concentrations in the serum of early-stage sporidesmin-poisoned cows is necessary.

Peter J Derrick and the Grand Scale 'Magnificent Mass Machine' mass spectrometer at Warwick.

The value of the Grand Scale 'Magnificent Mass Machine' mass spectrometer in investigating the reactivity of ions in the gas phase is illustrated by a brief analysis of previously unpublished work on metastable ionised n-pentyl methyl ether, which loses predominantly methanol and an ethyl radical, with very minor contributions for elimination of ethane and water. Expulsion of an ethyl radical is interpreted in terms of isomerisation to ionised 3-pentyl methyl ether, via distonic ions and, possibly, an ion-neutral complex comprising ionised ethylcyclopropane and methanol. This explanation is consistent with the closely similar behaviour of the labelled analogues, C3H7CH2CD2OCH3+. and C3H7CD2CH2OCH3+., and is supported by the greater kinetic energy release associated with loss of ethane from ionised n-propyl methyl ether compared to that starting from directly generated ionised 3-pentyl methyl ether.

Effect of metal surfaces on matrix-assisted laser desorption/ionization analyte peak intensities.

Different metal surfaces in the form of transmission electron microscope grids were examined as support surfaces in matrix-assisted laser desorption/ionization time-of-flight mass spectrometry with a view towards enhancement of peptide signal intensity. The observed enhancement between 5-fold and 20-fold relative to the normal stainless steel slide was investigated by applying the thermal desorption model for matrix-assisted laser desorption/ionization. A simple model evaluates the impact that the thermal properties of the metals have on the ion yield of the analyte. It was observed that there was not a direct, or strong, correlation between the thermal properties of the metals and the corresponding ion yield of the peptides. The effects of both fixed and variable laser irradiances versus ion yield were also examined for the respective metals studied. In all cases the use of transmission electron microscope grids required much lower laser irradiances in order to generate similar peak intensities as those observed with a stainless steel surface.

G-Quadruplex Supramolecular Assemblies in Photochemical Upconversion.

Parallel, tetramolecular G-quadruplex (G4) DNA possessing TINA monomer, (R)-1-O-[4-(1-pyrenylethynyl)phenylmethyl]glycerol, were synthesised and evaluated in complexes with tris(2,2'-bipyridine)ruthenium(II), [Ru(bpy)3 ](2+) , and the Zn(2+) derivative of 5,10,15,20-tetrakis-(1-methyl-4-pyridyl)-21 H,23H-porphine, ZnTMpyP4. UV/Vis, fluorescence, and circular dichroism (CD) spectroscopy showed that the use of G4-DNA as a template resulted in the effective communication between the ligands and the TINA molecule that was covalently attached to the 5'-end and between T and dG at the 5'-end of the dTG4 T sequence. Only one G4-DNA possessing the TINA molecule at the 5'-end of the dTG4 T sequence was able to yield a green-to-blue photochemical upconversion (PUC, λem =420 nm) in the presence of [Ru(bpy)3 ](2+) upon excitation at 500 nm. Different DNA secondary structures can thus be used in DNA-based assemblies for PUC and the way of attachment of chromophores to DNA plays a pivotal role for the creation of a photosynthetic centre.

In pursuit of resolution in time-of-flight mass spectrometry: A historical perspective.

Time-of-flight mass spectrometry is reviewed from its inception in the 1940s to the present day. The review is concerned with fundamentals of time-of-flight analyzers and of ion sources to the extent that sources influence analyzers. The patent literature has been covered, and efforts made to bring to light less well-known papers and studies © 2015 Wiley Periodicals, Inc. Mass Spec Rev. 35:738-757, 2016.

DNA-Based Assemblies for Photochemical Upconversion.

In the present study DNA was used as a scaffold for the supramolecular assembly of organic chromophores for photochemical upconversion (PUC). Initially, a green-to-blue PUC was observed using free chromophores in solution: tris(2,2'-bipyridine)ruthenium(II), [Ru(bpy)3](2+), which acts as a long-wavelength absorber (λex = 500 nm), and an in situ energy donor to an acceptor (R)-1-O-[4-(1-pyrenylethynyl)phenylmethyl]glycerol (PEPy or TINA monomer), which acts as an annihilator and short-wavelength photoemitter (λem = 420 nm). Then, DNA duplexes possessing TINA monomers were synthesized, and complexes with [Ru(bpy)3](2+) were investigated. In contrast to the dynamic interactions of [Ru(bpy)3](2+) with TINA monomer free in solution, ground-state complex formation was the predominant mechanism of interaction between [Ru(bpy)3](2+) and DNA duplexes bearing two TINA monomers at the 5' ends as shown by fluorescence, circular dichroism (CD), and UV-vis spectroscopy studies. The use of TINA-modified DNAs led to PUC occurring at concentrations significantly lower than that for free chromophores in solution: 2.5 µM [Ru(bpy)3](2+) and 5.0 µM TINA-modified duplex in the DNA-based systems in aqueous buffer versus 46 µM [Ru(bpy)3](2+) and 4.6 mM TINA monomer for the free donor and acceptor in DCM, respectively. Providing vast capabilities of DNA in the development of novel photonic systems as a result of the controllable organization of various chromophores, this study opens a new perspective for the development of DNA-based light-harvesting systems using PUC.

Unveiling the intricacies of the curved-field ion mirror.

In time-of-flight (ToF) mass spectrometry, non-linear ion mirrors, i.e. mirrors that produce a non-linear potential in which the ions fly, can focus ions exhibiting a very broad kinetic energy distribution. Besides the quadratic potential, the so-called curved field has been used in mirrors as a non-linear potential over the past 20 years. The curved field has, however, only been loosely defined. The focusing properties of the curved field appear to have never been mathematically investigated and explained. In this work, we put forward a rigid definition of the curved field and investigate the properties of it in terms of focusing and transmission. This rigid definition shows the curved field as a two-parameter function for a given mirror length and maximum potential, which can be optimized in terms of ToF distribution/resolution. Such an optimization was performed in one- dimension (1D) by solving the ToF integral equation numerically. The characteristics of optimized configurations arrived at through a comparison with mirrors with polynomial distance-potential relationships are assessed. These optimised solutions cannot be approximated in 1D by a common set of polynomial terms. There are optimised configurations affording ideal energy focussing, but on closer inspection, these potential distributions are found to be, in fact, quadratic potentials. There are other optimised solutions that afford good energy focussing in cases of there being significant field-free regions between the source/detector and the entrance to the mirror. Some of these configurations are approximated by a linear plus a quadratic term, others need higher-order terms to be approximated. To facilitate 3D investigation, the optimised solutions in 1D were used to set the initial voltages on electrodes in a rotationally symmetric mirror, which was modelled with the computer package SIMION 8.0. The SIMION ion-flight simulations revealed that the other optimised solutions with higher-order terms have the disadvantage of lowering the transmittance. That is to say, in 3D the configurations of the curved field, which give good resolution and transmittance with field- free regions between source/detector and mirror, can all be approximated by a potential consisting of a linear plus a quadratic term.

Interactions between naphthenic acids; dependence on molecular structure revealed through statistical analysis of ultra-high-resolution electrospray mass spectra.

Negative-ion electrospray mass spectra of samples of naphthenic acids contain peaks due to monomeric species [M-H](-) and dimeric species [2M-H](-). Working with a model system, intensities of the dimers were related to the intensities of monomers through linear inverse modelling. The statistical approaches investigated and the details of their applications to naphthenic acids are described here. The statistical analysis gives estimates of the relative probabilities of association of all pairs of monomers, where the monomers are defined by their accurate masses. The trends observed in these calculated probabilities of association exhibit breakpoints in the vicinity of monomers with 16 carbon atoms. These findings are discussed in terms of hydrophobic effects influencing the probability of association of naphthenic acids.

Dual nano-electrospray for probing solution interactions and fast reactions of complex biomolecules.

A novel nano-electrospray emitter has been developed containing two separated channels running throughout the length of the emitter. The emitters have been fabricated from "theta-shaped" borosilicate capillaries. Loading of different solutions into the two different channels opens up the possibility to study short timescale interactions within a Taylor cone common to both channels. The common Taylor cone constitutes an extremely small "mixing volume" of the order of femtolitres. The products of electrospray from the dual-channel emitters have been analysed by Fourier transform ion cyclotron resonance (FT-ICR) mass spectrometry. Results are presented for interactions of vancomycin with diacetyl-L-lysyl-D-alanyl- D-alanine and interactions of vancomycin with deuterated vancomycin. On the basis of these results, it is concluded that, during electrospray, specific non-covalent adducts have been formed and that there have been exchange reactions involving making and breaking of covalent bonds.

Salting-out effects on the characterization of naphthenic acids from Athabasca oil sands using electrospray ionization.

There is growing interest in the mass spectrometric characterization of oil sands acids present in natural waters and contaminated soils. This interest stems from efforts to isolate the principal toxic components of oil sands acid extractable organics in aquatic environment. Salting-out effects are demonstrated for nanospray ionization mass spectra of Athabasca oil sands acid extractable organics (naphthenic acids), using Fourier transform ion cyclotron resonance (FT-ICR) mass spectrometry. The differences in spectra obtained for the sodium naphthenates in dichloromethane/acetonitrile cosolvents compared to spectra obtained in the absence of saturated sodium chloride salts, are used here as a surrogate to indicate the more bioavailable or toxic components in natural waters. Whereas, monocarboxylic compounds (C(n)H(2n+Z)O(2)) were prevalent in the Z =-4, -6, and -12 (2, 3 and 6-ring naphthenic acids respectively) family in the carbon number range of 13 to 19 in the dichloromethane/acetonitrile cosolvent systems, salting-out effects resulted in a general enhancement of Z =-4 species, relative to others. Likewise, the shift in relative intensities of species containing O(1), O(3), O(4), O(2)S and O(3)S was dramatic for systems with and without saturated salts present. The O(4) and O(3)S species for example, were prevalent in the dichloromethane/acetonitrile cosolvent but were non-detected in the presence of saturated salts. Interactions of oil sands acids with salts are expected to occur in oil sands processed waters and natural saline waters. As evident by the distribution of species observed, salting-out effects will play a major role in limiting the bioavailability of oil sands acids in aquatic systems.

Characterization of pseudacyclins A-E, a suite of cyclic peptides produced by Pseudallescheria boydii.

Pseudallescheria boydii sensu lato is an emerging fungal pathogen causing fatal infections in both immunocompromised and immunocompetent hosts. In this work, two P. boydii isolates (human and animal origin) have been identified as being producers of cyclic peptides. Five putative nonribosomal peptides with a unique structure, which have been named pseudacyclins, were characterized by nuclear magnetic resonance spectroscopy and mass spectrometry. The most abundant representative of the pseudacyclins was quantified also on fungal spores. The presence of these peptides on inhaled fungal spores creates the possibility for exploitation of pseudacyclins as early indicators of fungal infections caused by Pseudallescheria species.

Dissociation of nystatin and amphotericin analogues: characterisation of minor anti-fungal macrolides.

Tandem mass spectrometry combined with Fourier transform ion cyclotron resonance (FT-ICR) has been the basis for rationalizing the fragmentation mechanisms of anti-fungal macrolides nystatin A(1), amphotericin B and pimaricin. The positive ion mass spectra were not informative, however, the dissociation of deprotonated molecules led to structurally significant ring-opened fragments. Using this approach of tandem FT-ICR mass spectrometry and electrospray ionisation coupled with high-performance liquid -chromatography (HPLC), 11 macrolide natural analogues or degradation products were characterised in the nystatin mixture.

Mass spectrometric study of glucose and cellobiose produced during enzymatic hydrolysis of alpha-cellulose extracted from oak late-wood annual rings.

We present the first results concerning interannual variations in concentrations of glucose and cellobiose, obtained through enzymatic hydrolysis of alpha-cellulose. The alpha-cellulose was extracted from late-wood of oak. The tree-ring chronologies, wood components and their physical and chemical properties provide information about the ecosystem in which the tree grew, and thus information regarding climate variability and the impact of human activity in the past. The large molecular size and insolubility make it difficult to determine precisely the chemical and physical properties of the intact cellulose polymer. Enzymatic hydrolysis is the principal method of degradation of cellulose. In this study the feasibility has been examined of characterizing alpha-cellulose through analysis by mass spectrometry (MS) of the degradation products from hydrolysis. Degradation of alpha-cellulose was possible without using alkaline or acid buffers. Analysis by MS provided the opportunity to obtain information on the biodegradation of saccharides. The presence of cellobiose and glucose in the degradation product was evidenced by the mass spectra. We have compared the abundances of these glucose and cellobiose ions with carbon isotope ratios, the efficiency of extraction of alpha-cellulose from the wood and tree-ring width indices. The challenge is to establish, with respect to climate changes and environmental conditions, the significance of the variations from one year to another in the observed abundances of glucose and cellobiose ions.

Chemistry of (and on) transition metal clusters: a Fourier transform ion cyclotron resonance study of the reaction of niobium cluster cations with nitric oxide.

The reactions of niobium cluster cations, Nb(+)(n) (n = 2-19), with nitric oxide have been investigated using Fourier transform ion cyclotron resonance mass spectrometry (FT-ICR). The overall reaction rate constants are found to be in reasonable agreement with collision rates calculated using the surface charge capture model. The dominant reaction for small clusters (n <9) involves reaction-induced fragmentation resulting in the loss of either NbO or NbN. By contrast, the main reaction observed for the larger clusters (n> 11) is sequential NO chemisorption. Clusters n = 9, 10 exhibit both extremes of behaviour and are the only clusters upon which there is evidence of NO decomposition with N(2) loss observed whenever multiple NO molecules are co-adsorbed. The rate constants for each process have been determined as a function of cluster size.

Both Ca2+ and Zn2+ are essential for S100A12 protein oligomerization and function.

BACKGROUND: Human S100A12 is a member of the S100 family of EF-hand calcium-modulated proteins that are associated with many diseases including cancer, chronic inflammation and neurological disorders. S100A12 is an important factor in host/parasite defenses and in the inflammatory response. Like several other S100 proteins, it binds zinc and copper in addition to calcium. Mechanisms of zinc regulation have been proposed for a number of S100 proteins e.g. S100B, S100A2, S100A7, S100A8/9. The interaction of S100 proteins with their targets is strongly dependent on cellular microenvironment. RESULTS: The aim of the study was to explore the factors that influence S100A12 oligomerization and target interaction. A comprehensive series of biochemical and biophysical experiments indicated that changes in the concentration of calcium and zinc led to changes in the oligomeric state of S100A12. Surface plasmon resonance confirmed that the presence of both calcium and zinc is essential for the interaction of S100A12 with one of its extracellular targets, RAGE--the Receptor for Advanced Glycation End products. By using a single-molecule approach we have shown that the presence of zinc in tissue culture medium favors both the oligomerization of exogenous S100A12 protein and its interaction with targets on the cell surface. CONCLUSION: We have shown that oligomerization and target recognition by S100A12 is regulated by both zinc and calcium. Our present work highlighted the potential role of calcium-binding S100 proteins in zinc metabolism and, in particular, the role of S100A12 in the cross talk between zinc and calcium in cell signaling.

The chemistry of nitrogen oxides on small size-selected cobalt clusters, Co(n) (+).

Fourier transform ion cyclotron resonance mass spectrometry has been employed to study the reactions of gas-phase cationic cobalt clusters, Co(n) (+) (n=4-30), with nitric oxide, NO, and nitrous oxide, N(2)O, under single collision conditions. Isolation of the initial cluster permits detailed investigation of fragmentation channels which characterize the reactions of all but the largest clusters studied. In reaction with N(2)O, most clusters generate the monoxides Co(n)O(+) without fragmentation, cobalt atom loss accompanying only subsequent reactions. By contrast, chemisorption of even a single NO molecule is accompanied by fragmentation of the cluster. The measured rate coefficients for the Co(n) (+)+N(2)O reaction as a function of cluster size are significantly smaller than those calculated using the surface charge capture model, while for NO the rates are comparable. The reactions have been studied under high coverage conditions by storing clusters for extended periods to permit multiple reactions to occur. This leads to interesting chemistry on the surface of the cluster resulting in the formation of stable oxide clusters and/or the decomposition of nitric oxide on the cluster with the resulting loss of molecular nitrogen.

Monitoring conformational changes in protein complexes using chemical cross-linking and Fourier transform ion cyclotron resonance mass spectrometry: the effect of calcium binding on the calmodulin-melittin complex.

Calmodulin is an EF hand calcium binding protein. Its binding affinities to various protein/peptide targets often depend on the conformational changes induced by the binding of calcium. One such target is melittin, which binds tightly to calmodulin in the presence of calcium, and inhibits its function. Chemical cross-linking combined with Fourier transform ion cyclotron resonance mass spectrometry has been employed to investigate the coordination of calmodulin and melittin in the complex at different concentrations of calcium. This methodology can be used to monitor structural changes of proteins induced by ligand binding, and study the effects these changes have on non- covalent interactions between proteins. Cross-linking results indicate that the binding place of the first melittin in the calcium free calmodulin form is the same as in the calcium loaded calmodulin/melittin complex.

High-energy collision induced dissociation fragmentation pathways of peptides, probed using a multiturn tandem time-of-flight mass spectrometer "MULTUM-TOF/TOF".

A new multiturn tandem time-of-flight (TOF) mass spectrometer "MULTUM-TOF/TOF" has been designed and constructed. It consists of a matrix-assisted laser desorption/ionization ion source, a multiturn TOF mass spectrometer, a collision cell, and a quadratic-field ion mirror. The multiturn TOF mass spectrometer can overcome the problem of precursor ion selection in TOF, due to insufficient time separation between two adjacent TOF peaks, by increasing the number of cycles. As a result, the total TOF increases with the increase in resolving power. The quadratic-field ion mirror allows temporal focusing for fragment ions with different kinetic energies. Product ion spectra from monoisotopically selected precursor ions of angiotensin I, substance P, and bradykinin have been obtained. The fragment ions observed are mainly the result of high-energy collision induced dissociation.

Characterization of naphthenic acids from athabasca oil sands using electrospray ionization: the significant influence of solvents.

There is a need to develop routine and rugged methods for the characterization of oil sands naphthenic acids present in natural waters and contaminated soils. Mass spectra of naphthenic acids, obtained using a variant of electrospray ionization coupled with a Fourier transform ion cyclotron resonance mass spectrometer, are shown here to vary greatly, reflecting their dependence on solubilities of the acids in organic solvents. The solubilities of components in, for example, 1-octanol (similar solvent to fatty tissue) compared to polar solvents such as methanol or acetonitrile are used here as a surrogate to indicate the more bioavailable or toxic components of naphthenic acids in natural waters. Monocarboxylic compounds (CnH2n+zO2) in the z=-4, -6, and -12 (2-, 3-, and 6-ring naphthenic acids, respectively) family in the carbon number range of 13-19 were prevalent in all solvent systems. The surrogate method is intended to serve as a guide in the isolation of principle toxic components, which in turn supports efforts to remediate oil sands contaminated soils and groundwater.

Nitric oxide decomposition on small rhodium clusters, Rh(n)+/-.

The decomposition of nitric oxide on small charged rhodium clusters Rh(n)(+/-) (6 < n < 30) has been investigated by Fourier transform ion cyclotron resonance mass spectrometry. For both cationic and anionic naked clusters, the rates of reaction with NO increase smoothly with cluster size in the range studied without the dramatic size-dependent fluctuations often associated with the reactions of transition-metal clusters. The cationic clusters react significantly faster than the anions and both exhibit rate constants exceeding collision rates calculated by average dipole orientation theory. Both the approximate magnitude and the trends in reactivity are modeled well by the surface charge capture model recently proposed by Kummerlöwe and Beyer. All clusters studied here exhibit pseudo-first-order kinetics with no sign of biexponential kinetics often interpreted as evidence for multiple isomeric structures. Experiments involving prolonged exposure to NO have revealed interesting size-dependent trends in the mechanism and efficiency of NO decomposition: For most small clusters (n < 17), once two NO molecules are coadsorbed on a cluster, N(2) is evolved, generating the corresponding dioxide cluster. By analogy with experiments on extended surfaces, this observation is interpreted in terms of the dissociative adsorption of NO in the early stages of reaction, generating N atoms that are mobile on the surface of the cluster. For clusters where n < 13, this chemistry, which occurs independently of the cluster charge, repeats until a size-dependent, limiting oxygen coverage is achieved. Following this, NO is observed to adsorb on the oxide cluster without further N(2) evolution. For n = 14-16 no single end-point is observed and reaction products are based on a small range of oxide structures. By contrast, no evidence for N(2) production is observed for clusters n = 13 and n > 16, for which simple sequential NO adsorption dominates the chemistry. Interestingly, there is no evidence for the production of N(2)O or NO(2) on any of the clusters studied. A simple general mechanism is proposed that accounts for all observations. The detailed decomposition mechanisms for each cluster exhibit size (and, by implication, structure) dependent features with Rh(13)(+/-) particularly anomalous by comparison with neighboring clusters.