Effects of concentrated fecal microbiota transplant on the equine fecal microbiota after antibiotic-induced dysbiosis.

Bacterial imbalances are observed in intestinal diseases and fecal microbiota transplantation (FMT) has been used to restore the intestinal microbiota of horses. However, there is evidence that the current methods proposed for FMT in horses have limited efficacy. The objective of this study was to concentrate the bacteria present in the donor stool by centrifugation, and to test the effect in horses with antibiotic-induced dysbiosis. One healthy 11-year-old horse was selected as a fecal donor and 9 horses were given trimethoprim sulfadiazine (TMS) for 5 days to induce dysbiosis. Horses received either a concentrated FMT (cFMT, n = 3), fresh unconcentrated FMT (fFMT, n = 3), or 10% glycerol solution (vehicle, VEH, n = 3) by nasogastric tube for 3 days. Fecal samples were collected on Days 0, 4, 9, 11, and 21 for microbiota analysis (Illumina sequencing). The TMS significantly changed the bacterial composition of horses' feces (D0 versus D4). The composition of the cFMT and fFMT recipient horses was significantly different after transplantation compared to after antibiotic-induced dysbiosis (D4 versus D11), whereas the microbiota of the vehicle recipients was not, indicating that both protocols induced transient changes. However, preparation of FMT solutions markedly changed the original composition present in the donor's feces, with significant enrichment of Escherichia genus in the cFMT. Individual susceptibility to restoration of the microbiota was observed in horses, similar to what is known for other species. Our results suggest that concentrating bacteria should not be recommended in preparation of FMT solutions and that further research is required to improve current methods recommended to perform FMT in horses.

Des déséquilibres bactériens sont observés dans les maladies intestinales et la transplantation de microbiote fécal (FMT) a été utilisée pour la restaurer le microbiote intestinal des chevaux. Cependant, que les méthodes actuelles proposées pour FMT chez les chevaux ont une efficacité limitée. L'objectif de cette étude était de concentrer les bactéries présentes dans les selles du donneur par centrifugation, et de tester leur effet chez des chevaux atteints de dysbiose induite par les antibiotiques. Un cheval sain de 11 ans a été sélectionné comme donneur fécal et 9 chevaux ont reçu du triméthoprime sulfadiazine (TMS) pendant cinq jours pour induire une dysbiose. Les chevaux ont reçu soit une FMT concentrée (cFMT, n = 3), une FMT fraîche non concentrée (fFMT, n = 3) ou une solution de glycérol à 10 % (véhicule, VEH, n = 3) par sonde naso-gastrique pendant 3 jours. Des échantillons fécaux ont été prélevés aux jours 0, 4, 9, 11 et 21 pour analyse du microbiote (séquençage Illumina). Le TMS a significativement modifié la composition bactérienne des matières fécales des chevaux (D0 versus D4). La composition des chevaux receveurs cFMT et fFMT était significativement différente après la transplantation par rapport à la dysbiose induite par les antibiotiques (D4 versus D11), alors que le microbiote des receveurs de véhicules ne l'était pas, indiquant que les deux protocoles induisaient des changements transitoires. Cependant, la préparation des solutions FMT a considérablement modifié la composition originale présente dans les matières fécales du donneur, avec un enrichissement significatif du genre Escherichia dans le cFMT. Une susceptibilité individuelle à la restauration du microbiote a été observée chez les chevaux, à l'instar de ce qui est connu chez d'autres espèces. Nos résultats suggèrent que la concentration des bactéries ne devrait pas être recommandée dans la préparation des solutions FMT et que des recherches supplémentaires sont nécessaires pour améliorer les méthodes actuelles recommandées pour effectuer la FMT chez les chevaux.(Traduit par les auteurs).

Characterization of fungal exposure and dectin-1 expression in healthy horses and horses with severe asthma.

OBJECTIVE: To quantify dectin-1 expression in bronchoalveolar lavage fluid (BALF), create polyclonal antibodies against equine dectin-1 and localize it in tissues, and quantify fungal exposure in pastured and stabled asthmatic and nonasthmatic horses. SAMPLES: BALF samples from 6 controls and 6 horses with severe asthma. Stored lung and nasal wash samples. PROCEDURES: Dectin-1 expression was quantified by quantitative PCR (qPCR). Purified peptide from equine dectin-1 was used to generate polyclonal antibodies and was confirmed with immunological testing. Fungal exposure was quantified in BALF samples by counting fungal-like intracellular particles in phagocytic cells, by qPCR quantification of the "universal" 18S rRNA fungal gene, and by quantifying 36 specific fungi in equine and dust samples using qPCR assays. RESULTS: Equine dectin-1 was localized in tissues and cells, and functional isoforms were upregulated significantly in BALF after stabling. Pastured horses from both groups had low levels of fungi in BALF, and there was a significant increase in some specific fungi, most notably for Eurotium amstelodami, Wallemia sebi, and Aspergillus niger after stabling. However, stabled asthmatic horses had fewer phagocytized particles, less 18S rRNA signal, and fewer specific fungi compared to nonasthmatic horses. CLINICAL RELEVANCE: Stabling increases exposure to fungi, but asthmatic horses had fewer fungi reaching their lower airways, presumably resulting from congestion and narrowing of the airways. Exposure to fungi could contribute to airway inflammation by increasing dectin-1 functional isoforms, and exposure to indoor molds should be avoided.

Species-Level Gut Microbiota Analysis after Antibiotic-Induced Dysbiosis in Horses.

All current studies have used Illumina short-read sequencing to characterize the equine intestinal microbiota. Long-read sequencing can classify bacteria at the species level. The objectives of this study were to characterize the gut microbiota of horses at the species level before and after trimethoprim sulfadiazine (TMS) administration and to compare results with Illumina sequencing. Nine horses received TMS (30 mg/kg) orally for 5 days twice a day to induce dysbiosis. Illumina sequencing of the V4 region or full-length PacBio sequencing of the 16S rRNA gene was performed in fecal samples collected before and after antibiotic administration. The relative abundance and alpha diversity were compared between the two technologies. PacBio failed to classify the equine intestinal microbiota at the species level but confirmed Bacteroidetes as the most abundant bacteria in the feces of the studied horses, followed by Firmicutes and Fibrobacteres. An unknown species of the Bacteroidales order was highly abundant (13%) and deserves further investigation. In conclusion, PacBio was not suitable to classify the equine microbiota species but detected greater richness and less unclassified bacteria. Further efforts in improving current databanks to be used in equine studies are necessary.

Evaluation of changes in microbiota after fecal microbiota transplantation in 6 diarrheic horses.

The purpose of this study was to characterize the fecal microbiota of horses with acute and chronic diarrhea before and after fecal microbiota transplantation (FMT). Six client-owned horses with acute and chronic diarrhea received FMT from 2 healthy donor horses. Microbiota analysis using next-generation sequencing was performed on fecal samples collected before and 2 and 7 d after FMT. Signs of diarrhea improved in 4 horses, whereas the remaining 2 horses did not survive. There was a significant difference in the number of bacterial species between donors and recipients (P < 0.05). The Order Lactobacillales and the genera Lactobacillus, Intestinimonas, and Streptococcus were increased in the microbiota of diarrheic horses, and Saccharofermentans genus increased in healthy donors. The results suggest that FMT from the healthy donors was not effective over a 7-day period as it did not change the fecal microbiota of the diarrheic horses. Further research to improve the efficacy of FMT in horses is needed.

Évaluation des modifications du microbiote après une transplantation de microbiote fécal chez six chevaux avec la diarrhée. Le but de cette étude était de caractériser le microbiote fécal des chevaux souffrant de diarrhée aiguë et chronique avant et après la transplantation de microbiote fécal (FMT). Six chevaux souffrant de diarrhée aiguë et chronique et appartenant à des clients ont reçu des FMT provenant de deux chevaux donneurs en bonne santé. Une analyse du microbiote a été réalisée sur des échantillons fécaux prélevés avant et 2 et 7 jours après la FMT. Les signes de la diarrhée se sont améliorés chez 4 des 6 chevaux, tandis que les deux autres n'ont pas survécu. Il y avait une différence significative dans la richesse bactérienne entre les donneurs et les récipients (P < 0,05). L'ordre Lactobacillales, et les genres Lactobacillus, Intestinimonas et Streptococcus ont été associés au microbiote des chevaux diarrhéiques et le genre Saccharofermentanes à celui des donneurs sains. Les résultats suggèrent que la FMT n'a pas réussi à changer le microbiote fécal des chevaux diarrhéiques sur une période de 7 jours. Des recherches supplémentaires pour améliorer l'efficacité de la FMT chez les chevaux sont nécessaires.(Traduit par les auteurs).