First record of Phytomyxid infection of the non-native seagrass Halophila stipulacea in Puerto Rico.

Halophila stipulacea is an invasive seagrass in the Caribbean Sea that also harbors a phytomyxid endoparasite. Phytomyxean parasites are known to cause disease in agricultural crops and are documented to form galls in some seagrass species. Here we make the first report of phytomyxid infection of Halophila stipulacea in the Bahía de Jobos in Salinas, Puerto Rico. We found phytomyxid infected H. stipulacea at 3 of 5 sites examined; expanding the documented range of the Marinomyxa marina phytomyxid infection by almost 400 km from where it was first documented in 2018. Presence of the endoparasite has not impeded H. stipulacea dispersal and continued expansion of H. stipulacea will likely spread both the host seagrass and the endoparasite.

Atrazine fate and transport within the coastal zone in southeastern Puerto Rico.

Agrichemical transport to coastal waters may have adverse ecological impact. This work examined atrazine fate and transport in a field adjacent to Puerto Rico's Jobos Bay National Estuarine Research Reserve. The herbicide's use was linked to residue detection in shallow groundwater and movement toward the estuary; however, data indicated that transport via this pathway was small. In contrast, surface runoff as tropical storm systems moved through the area appeared to have high potential for atrazine transport. In this case, transport to the estuary was limited by runoff event timing relative to atrazine application and very rapid atrazine dissipation (DT(50)=1-3 days) in field soil. Soil incubation studies showed that accelerated degradation conditions had developed in the field due to repeated atrazine treatment. To improve weed management, atrazine replacement with other herbicide(s) is recommended. Use of products that have greater soil persistence may increase runoff risk.

Characterization of land-based sources of pollution in Jobos Bay, Puerto Rico: status of heavy metal concentration in bed sediment.

As part of an assessment of land-based sources of pollution in Jobos Bay, Puerto Rico, sediment samples were collected at 43 sites to characterize concentrations of a suite of pollutants, including metals. Fifteen major and trace metals (Ag, Al, As, Cd, Cr, Cu, Fe, Hg, Mn Ni, Pb, Sb, Se, Sn, and Zn) were measured along with total organic carbon and grain size in surficial sediments. For most metals, maximum concentrations were seen in the eastern bay; however, values were still within concentration ranges found in other estuarine systems. In contrast, silver was higher in the western region. In general, metal distribution in the bay was positively correlated with grain size. Additionally, correlations between Al and other metals suggest natural sources for metals. The data presented here suggest that, although the Jobos Bay watershed contains both urban centers along with industrial and agricultural developments, anthropogenic inputs of metals may be negligible.

Characterization of organic chemical contaminants in sediments from Jobos Bay, Puerto Rico.

Jobos Bay, located on the southeastern coast of Puerto Rico, contains a variety of habitats including mangroves, seagrass meadows, and coral reefs. The watershed surrounding the bay includes a number of towns, agricultural areas, and the Jobos Bay National Estuarine Research Reserve (NERR). Jobos Bay and the surrounding watershed are part of a Conservation Effects Assessment Project (CEAP), involving the Jobos Bay NERR, the US Department of Agriculture, and the National Oceanic and Atmospheric Administration (NOAA) to assess the benefits of agricultural best management practices (BMPs) on the terrestrial and marine environments. As part of the Jobos Bay CEAP, NOAA collected sediment samples in May 2008 to characterize over 130 organic chemical contaminants. This paper presents the results of the organic contaminant analysis. The organic contaminants detected in the sediments included polycyclic aromatic hydrocarbons (PAHs), polychlorinated biphenyls, and the pesticide DDT. PAHs at one site in the inner bay near a boat yard were significantly elevated; however, all organic contaminant classes measured were below NOAA sediment quality guidelines that would have indicated that impacts were likely. The results of this work provide an important baseline assessment of the marine environment that will assist in understanding the benefits of implementing BMPs on water quality in Jobos Bay.

Geochemical rate-RNA integration study: ribulose-1,5-bisphosphate carboxylase/oxygenase gene transcription and photosynthetic capacity of planktonic photoautotrophs.

A pilot field experiment to assess the relationship between traditional biogeochemical rate measurements and transcriptional activity of microbial populations was carried out at the LEO 15 site off Tuckerton, N.J. Here, we report the relationship between photosynthetic capacity of autotrophic plankton and transcriptional activity of the large subunit gene (rbcL) for ribulose-1,5-bisphosphate carboxylase/oxygenase (RubisCO), the enzyme responsible for primary carbon fixation during photosynthesis. Similar diel patterns of carbon fixation and rbcL gene expression were observed in three of four time series, with maxima for photosynthetic capacity (P(max)) and rbcL mRNA occurring between 10 a.m. and 1 p.m. The lowest P(max) and rbcL levels were detected between 6 p.m. and 10:30 p.m. A significant correlation was found between P(max) and form ID rbcL mRNA (R(2) = 0.56) and forms IA and IB (R(2) = 0.41 and 0.47, respectively). The correlation between the abundance of "diatom" rbcL and P(max) mRNA was modest (R(2) = 0.49; n = 12) but improved dramatically (R(2) = 0.97; n = 10) upon removal of two outliers which represented afternoon samples with high P(max) but lower mRNA levels. Clone libraries from reverse transcription-PCR-amplified rbcL mRNA indicated the presence of several chromophytic algae (diatoms, prymnesiophytes, and chrysophytes) and some eukaryotic green flagellates. Analogous results were obtained from amplified small rRNA sequences and secondary pigment analysis. These results suggest that diatoms were a major contributor to carbon fixation at LEO 15 at the time of sampling and that photosynthetic carbon fixation was partially controlled by transcriptional regulation of the RubisCO gene.