Your browser doesn't support javascript.
loading
Mostrar: 20 | 50 | 100
Resultados 1 - 18 de 18
Filtrar
1.
Heliyon ; 10(11): e31648, 2024 Jun 15.
Artigo em Inglês | MEDLINE | ID: mdl-38868017

RESUMO

The agricultural sector, in particular viticulture, is highly susceptible to variations in the environment, crop conditions, and operational factors. Effectively managing these variables in the field necessitates observation, measurement, and responsive actions. Leveraging new technologies within the realm of precision agriculture, vineyards can enhance their long-term efficiency, productivity, and profitability. In our work we propose a novel analysis of the impact of pedoclimatic factors on wine, with a case study focusing on the Denomination of Controlled and Guaranteed Origin Chianti Classico (DOCG), a prime wine-producing region located in Tuscany, between the provinces of Siena and Florence. We first collected a novel dataset, where geographic information as well as wine quality information were collected, using publicly available sources. Using such geographic information retrieved and an unsupervised machine learning approach, we conducted an in-depth examination of pedoclimatic and production data. To collect the whole set of possibly relevant features, we first assessed the region's morphological attributes, including altitude, exposure, and slopes, while pinpointing individual wineries. Subsequently we then calculated crucial viticultural indices such as the Winkler, Huglin, Fregoni, and Freshness Index by utilizing daily temperature records from Chianti Classico, and we further related them to an assessment of wine quality. In addition to this, we designed and distributed a survey conducted among a sample of wineries situated in the Chianti Classico area, obtaining valuable insights into local data. The primary goal of this study is to elucidate the interrelationships between various parameters associated with the region, considering influential factors such as the environment, viticulture, and field operations that significantly impact wine production. By doing so, wineries could potentially unlock the full potential of their resources. In fact, through the unsupervised and correlation analysis we could elucidate the relationships existing between the pedoclimatic parameters of the region, considering the most important factors such as viticulture and field operations, and relate them to wine quality as for instance using the survey data collected. This study represents an unprecedent in the literature, and it could pave the path for future studies focusing on the importance of climatic factors into production and quality of wines.

2.
Heliyon ; 10(3): e25404, 2024 Feb 15.
Artigo em Inglês | MEDLINE | ID: mdl-38333823

RESUMO

Artificial Intelligence (AI) applications and Machine Learning (ML) methods have gained much attention in recent years for their ability to automatically detect patterns in data without being explicitly taught rules. Specific features characterise the ECGs of patients with Brugada Syndrome (BrS); however, there is still ambiguity regarding the correct diagnosis of BrS and its differentiation from other pathologies. This work presents an application of Echo State Networks (ESN) in the Recurrent Neural Networks (RNN) class for diagnosing BrS from the ECG time series. 12-lead ECGs were obtained from patients with a definite clinical diagnosis of spontaneous BrS Type 1 pattern (Group A), patients who underwent provocative pharmacological testing to induce BrS type 1 pattern, which resulted in positive (Group B) or negative (Group C), and control subjects (Group D). One extracted beat in the V2 lead was used as input, and the dataset was used to train and evaluate the ESN model using a double cross-validation approach. ESN performance was compared with that of 4 cardiologists trained in electrophysiology. The model performance was assessed in the dataset, with a correct global diagnosis observed in 91.5 % of cases compared to clinicians (88.0 %). High specificity (94.5 %), sensitivity (87.0 %) and AUC (94.7 %) for BrS recognition by ESN were observed in Groups A + B vs. C + D. Our results show that this ML model can discriminate Type 1 BrS ECGs with high accuracy comparable to expert clinicians. Future availability of larger datasets may improve the model performance and increase the potential of the ESN as a clinical support system tool for daily clinical practice.

3.
PLoS One ; 19(1): e0296465, 2024.
Artigo em Inglês | MEDLINE | ID: mdl-38165861

RESUMO

In this study, we introduce an innovative application of clustering algorithms to assess and appraise Italy's alignment with respect to the Sustainable Development Goals (SDGs), focusing on those related to climate change and the agrifood market. Specifically, we examined SDG 02: Zero Hunger, SDG 12: Responsible Consumption and Production, and SDG 13: Climate Change, to evaluate Italy's performance in one of its most critical economic sectors. Beyond performance analysis, we administered a questionnaire to a cross-section of the Italian populace to gain deeper insights into their awareness of sustainability in everyday grocery shopping and their understanding of SDGs. Furthermore, we employed an unsupervised machine learning approach in our research to conduct a comprehensive evaluation of SDGs across European countries and position Italy relative to the others. Additionally, we conducted a detailed analysis of the responses to a newly designed questionnaire to gain a reasonable description of the population's perspective on the research topic. A general poor performance in the SDGs indicators emerged for Italy. However, from the questionnaire results, an overall significant interest in the sustainability of the acquired products from italian citizens.


Assuntos
Aprendizado de Máquina , Desenvolvimento Sustentável , Europa (Continente) , Mudança Climática , Inquéritos e Questionários , Objetivos
4.
Sci Rep ; 13(1): 6196, 2023 Apr 16.
Artigo em Inglês | MEDLINE | ID: mdl-37062782

RESUMO

In 2021 almost 300 mm of rain, nearly half of the average annual rainfall, fell near Catania (Sicily Island, Italy). Such events took place in just a few hours, with dramatic consequences on the environmental, social, economic, and health systems of the region. These phenomena are now very common in various countries all around the world: this is the reason why, detecting local extreme rainfall events is a crucial prerequisite for planning actions, able to reverse possibly intensified dramatic future scenarios. In this paper, the Affinity Propagation algorithm, a clustering algorithm grounded on machine learning, was applied, to the best of our knowledge, for the first time, to detect extreme rainfall areas in Sicily. This was possible by using a high-frequency, large dataset we collected, ranging from 2009 to 2021 which we named RSE (the Rainfall Sicily Extreme dataset). Weather indicators were then been employed to validate the results, thus confirming the presence of recent anomalous rainfall events in eastern Sicily. We believe that easy-to-use and multi-modal data science techniques, such as the one proposed in this study, could give rise to significant improvements in policy-making for successfully contrasting climate change.

5.
PLoS One ; 18(1): e0279040, 2023.
Artigo em Inglês | MEDLINE | ID: mdl-36662837

RESUMO

The automotive market is experiencing, in recent years, a period of deep transformation. Increasingly stricter rules on pollutant emissions and greater awareness of air quality by consumers are pushing the transport sector towards sustainable mobility. In this historical context, electric cars have been considered the most valid alternative to traditional internal combustion engine cars, thanks to their low polluting potential, with high growth prospects in the coming years. This growth is an important element for companies operating in the electricity sector, since the spread of electric cars is necessarily accompanied by an increasing need of electric charging points, which may impact the electricity distribution network. In this work we proposed a novel application of machine learning methods for the estimation of factors which could impact the distribution of the circulating fleet of electric cars in Italy. We first collected a new dataset from public repository to evaluate the most relevant features impacting the electric cars market. The collected datasets are completely new, and were collected starting from the identification of the main variables that were potentially responsible for the spread of electric cars. Subsequently we distributed a novel designed survey to further investigate such factors on a population sample. Using machine learning models, we could disentangle potentially new interesting information concerning the Italian scenario. We analysed it, in fact, according to different geographical Italian dimensions (national, regional and provincial) and with the final identification of those potential factors that could play a fundamental role in the success and distribution of electric cars mobility. Code and data are available at: https://github.com/GiovannaMariaDimitri/A-machine-learning-approach-to-analyse-and-predict-the-electric-cars-scenario-the-Italian-case.


Assuntos
Poluição do Ar , Poluentes Ambientais , Automóveis , Poluição do Ar/análise , Itália/epidemiologia , Eletricidade , Poluentes Ambientais/análise
6.
IEEE/ACM Trans Comput Biol Bioinform ; 20(2): 1211-1220, 2023.
Artigo em Inglês | MEDLINE | ID: mdl-35576419

RESUMO

Drug Side-Effects (DSEs) have a high impact on public health, care system costs, and drug discovery processes. Predicting the probability of side-effects, before their occurrence, is fundamental to reduce this impact, in particular on drug discovery. Candidate molecules could be screened before undergoing clinical trials, reducing the costs in time, money, and health of the participants. Drug side-effects are triggered by complex biological processes involving many different entities, from drug structures to protein-protein interactions. To predict their occurrence, it is necessary to integrate data from heterogeneous sources. In this work, such heterogeneous data is integrated into a graph dataset, expressively representing the relational information between different entities, such as drug molecules and genes. The relational nature of the dataset represents an important novelty for drug side-effect predictors. Graph Neural Networks (GNNs) are exploited to predict DSEs on our dataset with very promising results. GNNs are deep learning models that can process graph-structured data, with minimal information loss, and have been applied on a wide variety of biological tasks. Our experimental results confirm the advantage of using relationships between data entities, suggesting interesting future developments in this scope. The experimentation also shows the importance of specific subsets of data in determining associations between drugs and side-effects.


Assuntos
Efeitos Colaterais e Reações Adversas Relacionados a Medicamentos , Humanos , Descoberta de Drogas , Redes Neurais de Computação , Probabilidade , Projetos de Pesquisa
7.
Sci Rep ; 12(1): 1330, 2022 01 25.
Artigo em Inglês | MEDLINE | ID: mdl-35079043

RESUMO

Advanced age represents one of the major risk factors for Parkinson's Disease. Recent biomedical studies posit a role for microRNAs, also known to be remodelled during ageing. However, the relationship between microRNA remodelling and ageing in Parkinson's Disease, has not been fully elucidated. Therefore, the aim of the present study is to unravel the relevance of microRNAs as biomarkers of Parkinson's Disease within the ageing framework. We employed Next Generation Sequencing to profile serum microRNAs from samples informative for Parkinson's Disease (recently diagnosed, drug-naïve) and healthy ageing (centenarians) plus healthy controls, age-matched with Parkinson's Disease patients. Potential microRNA candidates markers, emerging from the combination of differential expression and network analyses, were further validated in an independent cohort including both drug-naïve and advanced Parkinson's Disease patients, and healthy siblings of Parkinson's Disease patients at higher genetic risk for developing the disease. While we did not find evidences of microRNAs co-regulated in Parkinson's Disease and ageing, we report that hsa-miR-144-3p is consistently down-regulated in early Parkinson's Disease patients. Moreover, interestingly, functional analysis revealed that hsa-miR-144-3p is involved in the regulation of coagulation, a process known to be altered in Parkinson's Disease. Our results consistently show the down-regulation of hsa-mir144-3p in early Parkinson's Disease, robustly confirmed across a variety of analytical and experimental analyses. These promising results ask for further research to unveil the functional details of the involvement of hsa-mir144-3p in Parkinson's Disease.


Assuntos
Envelhecimento/metabolismo , MicroRNAs/sangue , Doença de Parkinson/metabolismo , Idoso , Biomarcadores/sangue , Estudos de Coortes , Feminino , Humanos , Masculino , Pessoa de Meia-Idade
8.
Neurocrit Care ; 36(3): 738-750, 2022 06.
Artigo em Inglês | MEDLINE | ID: mdl-34642842

RESUMO

BACKGROUND: Traumatic brain injury (TBI) is an extremely heterogeneous and complex pathology that requires the integration of different physiological measurements for the optimal understanding and clinical management of patients. Information derived from intracranial pressure (ICP) monitoring can be coupled with information obtained from heart rate (HR) monitoring to assess the interplay between brain and heart. The goal of our study is to investigate events of simultaneous increases in HR and ICP and their relationship with patient mortality.. METHODS: In our previous work, we introduced a novel measure of brain-heart interaction termed brain-heart crosstalks (ctnp), as well as two additional brain-heart crosstalks indicators [mutual information ([Formula: see text]) and average edge overlap (ωct)] obtained through a complex network modeling of the brain-heart system. These measures are based on identification of simultaneous increase of HR and ICP. In this article, we investigated the relationship of these novel indicators with respect to mortality in a multicenter TBI cohort, as part of the Collaborative European Neurotrauma Effectiveness Research in TBI high-resolution work package. RESULTS: A total of 226 patients with TBI were included in this cohort. The data set included monitored parameters (ICP and HR), as well as laboratory, demographics, and clinical information. The number of detected brain-heart crosstalks varied (mean 58, standard deviation 57). The Kruskal-Wallis test comparing brain-heart crosstalks measures of survivors and nonsurvivors showed statistically significant differences between the two distributions (p values: 0.02 for [Formula: see text], 0.005 for ctnp and 0.006 for ωct). An inverse correlation was found, computed using the point biserial correlation technique, between the three new measures and mortality: - 0.13 for ctnp (p value 0.04), - 0.19 for ωct (p value 0.002969) and - 0.09 for [Formula: see text] (p value 0.1396). The measures were then introduced into the logistic regression framework, along with a set of input predictors made of clinical, demographic, computed tomography (CT), and lab variables. The prediction models were obtained by dividing the original cohort into four age groups (16-29, 30-49, 50-65, and 65-85 years of age) to properly treat with the age confounding factor. The best performing models were for age groups 16-29, 50-65, and 65-85, with the deviance of ratio explaining more than 80% in all the three cases. The presence of an inverse relationship between brain-heart crosstalks and mortality was also confirmed. CONCLUSIONS: The presence of a negative relationship between mortality and brain-heart crosstalks indicators suggests that a healthy brain-cardiovascular interaction plays a role in TBI.


Assuntos
Lesões Encefálicas Traumáticas/fisiopatologia , Encéfalo/fisiopatologia , Frequência Cardíaca/fisiologia , Coração/fisiologia , Pressão Intracraniana/fisiologia , Adolescente , Adulto , Idoso , Idoso de 80 Anos ou mais , Encéfalo/diagnóstico por imagem , Lesões Encefálicas Traumáticas/mortalidade , Estudos de Coortes , Humanos , Pessoa de Meia-Idade , Monitorização Fisiológica , Adulto Jovem
9.
NPJ Syst Biol Appl ; 7(1): 24, 2021 05 27.
Artigo em Inglês | MEDLINE | ID: mdl-34045472

RESUMO

Here, we performed a comprehensive intra-tissue and inter-tissue multilayer network analysis of the human transcriptome. We generated an atlas of communities in gene co-expression networks in 49 tissues (GTEx v8), evaluated their tissue specificity, and investigated their methodological implications. UMAP embeddings of gene expression from the communities (representing nearly 18% of all genes) robustly identified biologically-meaningful clusters. Notably, new gene expression data can be embedded into our algorithmically derived models to accelerate discoveries in high-dimensional molecular datasets and downstream diagnostic or prognostic applications. We demonstrate the generalisability of our approach through systematic testing in external genomic and transcriptomic datasets. Methodologically, prioritisation of the communities in a transcriptome-wide association study of the biomarker C-reactive protein (CRP) in 361,194 individuals in the UK Biobank identified genetically-determined expression changes associated with CRP and led to considerably improved performance. Furthermore, a deep learning framework applied to the communities in nearly 11,000 tumors profiled by The Cancer Genome Atlas across 33 different cancer types learned biologically-meaningful latent spaces, representing metastasis (p < 2.2 × 10-16) and stemness (p < 2.2 × 10-16). Our study provides a rich genomic resource to catalyse research into inter-tissue regulatory mechanisms, and their downstream consequences on human disease.


Assuntos
Redes Reguladoras de Genes , Transcriptoma , Redes Reguladoras de Genes/genética , Genômica , Humanos , Especificidade de Órgãos , Fenótipo , Transcriptoma/genética
10.
Acta Neurochir Suppl ; 131: 39-42, 2021.
Artigo em Inglês | MEDLINE | ID: mdl-33839815

RESUMO

OBJECTIVE: In a previous study, we observed the presence of simultaneous increases in intracranial pressure (ICP) and the heart rate (HR), which we denominated cardio-cerebral crosstalk (CC), and we related the number of such events to patient outcomes in a paediatric cohort. In this chapter, we present an extension of this work to an adult cohort from the Collaborative European NeuroTrauma Effectiveness Research in TBI (CENTER-TBI) study. METHODS: We implemented a sliding window algorithm to detect CC events. We considered subwindows of 10-min observations. If simultaneous increases of at least 20% in ICP and HR occurred with respect to the minimum ICP and HR values in the time windows, a CC event was detected. Correlation between the number of CC events and mortality was then obtained. RESULTS: The cohort consisted of 226 adults (aged 16-85 years). The number of CC events that were detected varied (mean 50, standard deviation 58). A point biserial correlation coefficient of -0.13 between mortality and CC was found. Although the correlation was weaker than that seen in the paediatric cohort (-0.30), the negative direction was replicated. CONCLUSION: In this work, we first extracted CC events from ICP and HR observations of adult patients with traumatic brain injury and related the number of CC events to patient outcomes. Consistency with the previous results in the paediatric cohort was observed. The more crosstalk events occurred, the better the patient outcome was.


Assuntos
Lesões Encefálicas Traumáticas , Adolescente , Adulto , Idoso , Idoso de 80 Anos ou mais , Algoritmos , Lesões Encefálicas Traumáticas/complicações , Criança , Estudos de Coortes , Frequência Cardíaca , Humanos , Pressão Intracraniana , Pessoa de Meia-Idade , Adulto Jovem
11.
Brief Bioinform ; 22(5)2021 09 02.
Artigo em Inglês | MEDLINE | ID: mdl-33538294

RESUMO

Alkaptonuria (AKU, OMIM: 203500) is an autosomal recessive disorder caused by mutations in the Homogentisate 1,2-dioxygenase (HGD) gene. A lack of standardized data, information and methodologies to assess disease severity and progression represents a common complication in ultra-rare disorders like AKU. This is the reason why we developed a comprehensive tool, called ApreciseKUre, able to collect AKU patients deriving data, to analyse the complex network among genotypic and phenotypic information and to get new insight in such multi-systemic disease. By taking advantage of the dataset, containing the highest number of AKU patient ever considered, it is possible to apply more sophisticated computational methods (such as machine learning) to achieve a first AKU patient stratification based on phenotypic and genotypic data in a typical precision medicine perspective. Thanks to our sufficiently populated and organized dataset, it is possible, for the first time, to extensively explore the phenotype-genotype relationships unknown so far. This proof of principle study for rare diseases confirms the importance of a dedicated database, allowing data management and analysis and can be used to tailor treatments for every patient in a more effective way.


Assuntos
Alcaptonúria/genética , Bases de Dados Genéticas , Genótipo , Aprendizado de Máquina , Seleção de Pacientes , Medicina de Precisão , Alcaptonúria/enzimologia , Feminino , Homogentisato 1,2-Dioxigenase/genética , Humanos , Masculino , Mutação , Doenças Raras
12.
Mech Ageing Dev ; 194: 111426, 2021 03.
Artigo em Inglês | MEDLINE | ID: mdl-33385396

RESUMO

Advanced age is the major risk factor for idiopathic Parkinson's disease (PD), but to date the biological relationship between PD and ageing remains elusive. Here we describe the rationale and the design of the H2020 funded project "PROPAG-AGEING", whose aim is to characterize the contribution of the ageing process to PD development. We summarize current evidences that support the existence of a continuum between ageing and PD and justify the use of a Geroscience approach to study PD. We focus in particular on the role of inflammaging, the chronic, low-grade inflammation characteristic of elderly physiology, which can propagate and transmit both locally and systemically. We then describe PROPAG-AGEING design, which is based on the multi-omic characterization of peripheral samples from clinically characterized drug-naïve and advanced PD, PD discordant twins, healthy controls and "super-controls", i.e. centenarians, who never showed clinical signs of motor disability, and their offspring. Omic results are then validated in a large number of samples, including in vitro models of dopaminergic neurons and healthy siblings of PD patients, who are at higher risk of developing PD, with the final aim of identifying the molecular perturbations that can deviate the trajectories of healthy ageing towards PD development.


Assuntos
Envelhecimento/metabolismo , Pesquisa Biomédica , Encéfalo/metabolismo , Geriatria , Mediadores da Inflamação/metabolismo , Neurônios/metabolismo , Doença de Parkinson/metabolismo , Fatores Etários , Idoso , Idoso de 80 Anos ou mais , Envelhecimento/genética , Envelhecimento/patologia , Encéfalo/patologia , Encéfalo/fisiopatologia , Estudos de Casos e Controles , Europa (Continente) , Feminino , Genômica , Humanos , Masculino , Metabolômica , Atividade Motora , Degeneração Neural , Neurônios/patologia , Doença de Parkinson/genética , Doença de Parkinson/patologia , Doença de Parkinson/fisiopatologia , Projetos de Pesquisa , Transdução de Sinais , Estudos em Gêmeos como Assunto
13.
Annu Int Conf IEEE Eng Med Biol Soc ; 2020: 1568-1571, 2020 07.
Artigo em Inglês | MEDLINE | ID: mdl-33018292

RESUMO

There is growing evidence that the use of stringent and dichotomic diagnostic categories in many medical disciplines (particularly 'brain sciences' as neurology and psychiatry) is an oversimplification. Although clear diagnostic boundaries remain useful for patients, families, and their access to dedicated NHS and health care services, the traditional dichotomic categories are not helpful to describe the complexity and large heterogeneity of symptoms across many and overlapping clinical phenotypes. With the advent of 'big' multimodal neuroimaging databases, data-driven stratification of the wide spectrum of healthy human physiology or disease based on neuroimages is theoretically become possible. However, this conceptual framework is hampered by severe computational constraints. In this paper we present a novel, deep learning based encode-decode architecture which leverages several parameter efficiency techniques generate latent deep embedding which compress the information contained in a full 3D neuroimaging volume by a factor 1000 while still retaining anatomical detail and hence rendering the subsequent stratification problem tractable. We train our architecture on 1003 brain scan derived from the human connectome project and demonstrate the faithfulness of the obtained reconstructions. Further, we employ a data driven clustering technique driven by a grid search in hyperparameter space to identify six different strata within the 1003 healthy community dwelling individuals which turn out to correspond to highly significant group differences in both physiological and cognitive data. Indicating that the well-known relationships between such variables and brain structure can be probed in an unsupervised manner through our novel architecture and pipeline. This opens the door to a variety of previously inaccessible applications in the realm of data driven stratification of large cohorts based on neuroimaging data.Clinical Relevance -With our approach, each person can be described and classified within a multi-dimensional space of data, where they are uniquely classified according to their individual anatomy, physiology and disease-related anatomical and physiological alterations.


Assuntos
Conectoma , Aprendizado Profundo , Neuroimagem , Encéfalo , Análise por Conglomerados , Bases de Dados Factuais , Humanos
14.
Front Genet ; 10: 726, 2019.
Artigo em Inglês | MEDLINE | ID: mdl-31552082

RESUMO

The genetic component of many common traits is associated with the gene expression and several variants act as expression quantitative loci, regulating the gene expression in a tissue specific manner. In this work, we applied tissue-specific cis-eQTL gene expression prediction models on the genotype of 808 samples including controls, subjects with mild cognitive impairment, and patients with Alzheimer's Disease. We then dissected the imputed transcriptomic profiles by means of different unsupervised and supervised machine learning approaches to identify potential biological associations. Our analysis suggests that unsupervised and supervised methods can provide complementary information, which can be integrated for a better characterization of the underlying biological system. In particular, a variational autoencoder representation of the transcriptomic profiles, followed by a support vector machine classification, has been used for tissue-specific gene prioritizations. Interestingly, the achieved gene prioritizations can be efficiently integrated as a feature selection step for improving the accuracy of deep learning classifier networks. The identified gene-tissue information suggests a potential role for inflammatory and regulatory processes in gut-brain axis related tissues. In line with the expected low heritability that can be apportioned to eQTL variants, we were able to achieve only relatively low prediction capability with deep learning classification models. However, our analysis revealed that the classification power strongly depends on the network structure, with recurrent neural networks being the best performing network class. Interestingly, cross-tissue analysis suggests a potentially greater role of models trained in brain tissues also by considering dementia-related endophenotypes. Overall, the present analysis suggests that the combination of supervised and unsupervised machine learning techniques can be used for the evaluation of high dimensional omics data.

15.
FASEB J ; 33(11): 12696-12703, 2019 11.
Artigo em Inglês | MEDLINE | ID: mdl-31462106

RESUMO

Alkaptonuria (AKU) is an ultrarare autosomal recessive disorder (MIM 203500) that is caused byby a complex set of mutations in homogentisate 1,2-dioxygenasegene and consequent accumulation of homogentisic acid (HGA), causing a significant protein oxidation. A secondary form of amyloidosis was identified in AKU and related to high circulating serum amyloid A (SAA) levels, which are linked with inflammation and oxidative stress and might contribute to disease progression and patients' poor quality of life. Recently, we reported that inflammatory markers (SAA and chitotriosidase) and oxidative stress markers (protein thiolation index) might be disease activity markers in AKU. Thanks to an international network, we collected genotypic, phenotypic, and clinical data from more than 200 patients with AKU. These data are currently stored in our AKU database, named ApreciseKUre. In this work, we developed an algorithm able to make predictions about the oxidative status trend of each patient with AKU based on 55 predictors, namely circulating HGA, body mass index, total cholesterol, SAA, and chitotriosidase. Our general aim is to integrate the data of apparently heterogeneous patients with AKUAKU by using specific bioinformatics tools, in order to identify pivotal mechanisms involved in AKU for a preventive, predictive, and personalized medicine approach to AKU.-Cicaloni, V., Spiga, O., Dimitri, G. M., Maiocchi, R., Millucci, L., Giustarini, D., Bernardini, G., Bernini, A., Marzocchi, B., Braconi, D., Santucci, A. Interactive alkaptonuria database: investigating clinical data to improve patient care in a rare disease.


Assuntos
Alcaptonúria , Biologia Computacional , Bases de Dados Genéticas , Medicina de Precisão , Doenças Raras , Alcaptonúria/metabolismo , Alcaptonúria/patologia , Alcaptonúria/terapia , Feminino , Humanos , Masculino , Doenças Raras/metabolismo , Doenças Raras/patologia , Doenças Raras/terapia
16.
Acta Neurochir Suppl ; 126: 147-151, 2018.
Artigo em Inglês | MEDLINE | ID: mdl-29492551

RESUMO

OBJECTIVES: The detection of increasing intracranial pressure (ICP) is important in preventing secondary brain injuries. Before mean ICP increases critically, transient ICP elevations may be observed. We have observed ICP transients of less than 10 min duration ,which occurred simultaneously with transient increases in heart rate (HR). These simultaneous events in HR and ICP suggest a direct interaction or communication between the heart and the brain. METHODS: This chapter describes four mathematical methods and their applicability in detecting the above heart-brain cross-talk events during long-term monitoring of ICP. RESULTS: Recurrence plots, cross-correlation function and wavelet analysis confirmed the relationship between ICP and HR time series. Using the peaks detection algorithm with a sliding window approach we found an average of 37 cross-talk events (± SD 39). The number of events detected varied among patients, from 1 to more than 150 events. CONCLUSION: Our analysis suggested that the peaks detection algorithm based on a sliding window approach is feasible for detecting simultaneous peaks, e.g. cross-talk events in the ICP and HR signals.


Assuntos
Algoritmos , Pressão Arterial/fisiologia , Lesões Encefálicas Traumáticas/fisiopatologia , Frequência Cardíaca/fisiologia , Hipertensão Intracraniana/diagnóstico , Pressão Intracraniana/fisiologia , Lesões Encefálicas Traumáticas/complicações , Criança , Feminino , Humanos , Hipertensão Intracraniana/complicações , Hipertensão Intracraniana/fisiopatologia , Masculino , Monitorização Fisiológica/métodos , Análise de Ondaletas
17.
Comput Biol Chem ; 68: 204-210, 2017 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-28391063

RESUMO

BACKGROUND: Identification of underlying mechanisms behind drugs side effects is of extreme interest and importance in drugs discovery today. Therefore machine learning methodology, linking such different multi features aspects and able to make predictions, are crucial for understanding side effects. METHODS: In this paper we present DrugClust, a machine learning algorithm for drugs side effects prediction. DrugClust pipeline works as follows: first drugs are clustered with respect to their features and then side effects predictions are made, according to Bayesian scores. Biological validation of resulting clusters can be done via enrichment analysis, another functionality implemented in the methodology. This last tool is of extreme interest for drug discovery, given that it can be used as a validation of the clusters obtained, as well as for the study of new possible interactions between certain side effects and nontargeted pathways. RESULTS: Results were evaluated on a 5-folds cross validations procedure, and extensive comparisons were made with available datasets in the field: Zhang et al. (2015), Liu et al. (2012) and Mizutani et al. (2012). Results are promising and show better performances in most of the cases with respect to the available literature. AVAILABILITY: DrugClust is an R package freely available at: https://cran.r-project.org/web/packages/DrugClust/index.html.


Assuntos
Efeitos Colaterais e Reações Adversas Relacionados a Medicamentos , Aprendizado de Máquina , Descoberta de Drogas
18.
Appl Netw Sci ; 2(1): 29, 2017.
Artigo em Inglês | MEDLINE | ID: mdl-30443583

RESUMO

BACKGROUND: We present a multiplex network model for the analysis of Intracranial Pressure (ICP) and Heart Rate (HR) behaviour after severe brain traumatic injuries in pediatric patients. The ICP monitoring is of vital importance for checking life threathening conditions, and understanding the behaviour of these parameters is crucial for a successful intervention of the clinician. Our own observations, exhibit cross-talks interaction events happening between HR and ICP, i.e. transients in which both the ICP and the HR showed an increase of 20% with respect to their baseline value in the window considered. We used a complex event processing methodology, to investigate the relationship between HR and ICP, after traumatic brain injuries (TBI). In particular our goal has been to analyse events of simultaneous increase by HR and ICP (i.e. cross-talks), modelling the two time series as a unique multiplex network system (Lacasa et al., Sci Rep 5:15508-15508, 2014). METHODS AND DATA: We used a complex network approach based on visibility graphs (Lacasa et al., Sci Rep 5:15508-15508, 2014) to model and study the behaviour of our system and to investigate how and if network topological measures can give information on the possible detection of crosstalks events taking place in the system. Each time series was converted as a layer in a multiplex network. We therefore studied the network structure, focusing on the behaviour of the two time series in the cross-talks events windows detected. We used a dataset of 27 TBI pediatric patients, admitted to Addenbrooke's Hospital, Cambridge, Pediatric Intensive Care Unit (PICU) between August 2012 and December 2014. RESULTS: Following a preliminary statistical exploration of the two time series of ICP and HR, we analysed the multiplex network proposed, focusing on two standard topological network metrics: the mutual interaction, and the average edge overlap (Lacasa et al., Sci Rep 5:15508-15508, 2014). We compared results obtained for these two indicators, considering windows in which a cross talks event between HR and ICP was detected with windows in which cross talks events were not present. The analysis of such metrics gave us interesting insights on the time series behaviour. More specifically we observed an increase in the value of the mutual interaction in the case of cross talk as compared to non cross talk. This seems to suggest that mutual interaction could be a potentially interesting "marker" for cross talks events.

SELEÇÃO DE REFERÊNCIAS
DETALHE DA PESQUISA
...