Asymptotic behavior of an epidemic model with infinitely many variants.

We investigate the long-time dynamics of a SIR epidemic model with infinitely many pathogen variants infecting a homogeneous host population. We show that the basic reproduction number [Formula: see text] of the pathogen can be defined in that case and corresponds to a threshold between the persistence ([Formula: see text]) and the extinction ([Formula: see text]) of the pathogen population. When [Formula: see text] and the maximal fitness is attained by at least one variant, we show that the systems reaches an endemic equilibrium state that can be explicitly determined from the initial data. When [Formula: see text] but none of the variants attain the maximal fitness, the situation is more intricate. We show that, in general, the pathogen is uniformly persistent and any family of variants that have a fitness which is uniformly lower than the optimal fitness, eventually gets extinct. We derive a condition under which the total pathogen population converges to a limit which can be computed explicitly. We also find counterexamples that show that, when our condition is not met, the total pathogen population may converge to an unexpected value, or the system can even reach an eternally transient behavior where the total pathogen population between several values. We illustrate our results with numerical simulations that emphasize the wide variety of possible dynamics.

A model of a fishery with fish storage and variable price involving delay equations.

We propose a bio-economic model of a fishery describing the variations of the fish stock, the fishing effort and the price of the resource on the market supposed to depend on supply and demand. The originality of this model comes from taking into account the storage of part of the resource for a certain time before being put up for sale on the market. Taking into account the supposedly fast price dynamics compared to the other mechanisms involved and after integration of the stock equation, the system is reduced to a system of two delayed differential equations. The qualitative analysis of the model is carried out with the search for equilibrium points and the study of their stability. The study shows the existence of a catastrophic equilibrium corresponding to the extinction of the resource and one or two sustainable fishery equilibrium points that can coexist under certain conditions. The model shows that storing part of the resource makes it possible to avoid a catastrophic situation with the extinction of the fish stock and to stabilize the fishery in the long term. The study also shows that the price variation of the resource has a stabilizing effect by avoiding the appearance of periodic solutions associated with a stable limit cycle surrounding a sustainable fishery equilibrium point resulting from a Hopf bifurcation, which is contrary to the case without price variation where this is possible.

Return-to-home model for short-range human travel.

In this work, we develop a mathematical model to describe the local movement of individuals by taking into account their return to home after a period of travel. We provide a suitable functional framework to handle this system and study the large-time behavior of the solutions. We extend our model by incorporating a colonization process and applying the return to home process to an epidemic.

An epi-evolutionary model for predicting the adaptation of spore-producing pathogens to quantitative resistance in heterogeneous environments.

We have modeled the evolutionary epidemiology of spore-producing plant pathogens in heterogeneous environments sown with several cultivars carrying quantitative resistances. The model explicitly tracks the infection-age structure and genetic composition of the pathogen population. Each strain is characterized by pathogenicity traits determining its infection efficiency and a time-varying sporulation curve taking into account lesion aging. We first derived a general expression of the basic reproduction number R 0 for fungal pathogens in heterogeneous environments. We show that the evolutionary attractors of the model coincide with local maxima of R 0 only if the infection efficiency is the same on all host types. We then studied the contribution of three basic resistance characteristics (the pathogenicity trait targeted, resistance effectiveness, and adaptation cost), in interaction with the deployment strategy (proportion of fields sown with a resistant cultivar), to (i) pathogen diversification at equilibrium and (ii) the shaping of transient dynamics from evolutionary and epidemiological perspectives. We show that quantitative resistance affecting only the sporulation curve will always lead to a monomorphic population, whereas dimorphism (i.e., pathogen diversification) can occur if resistance alters infection efficiency, notably with high adaptation costs and proportions of the resistant cultivar. Accordingly, the choice of the quantitative resistance genes operated by plant breeders is a driver of pathogen diversification. From an evolutionary perspective, the time to emergence of the evolutionary attractor best adapted to the resistant cultivar tends to be shorter when resistance affects infection efficiency than when it affects sporulation. Conversely, from an epidemiological perspective, epidemiological control is always greater when the resistance affects infection efficiency. This highlights the difficulty of defining deployment strategies for quantitative resistance simultaneously maximizing epidemiological and evolutionary outcomes.

Understanding dynamics of Plasmodium falciparum gametocytes production: Insights from an age-structured model.

Many models of within-host malaria infection dynamics have been formulated since the pioneering work of Anderson et al. in 1989. Biologically, the goal of these models is to understand what governs the severity of infections, the patterns of infectiousness, and the variation thereof across individual hosts. Mathematically, these models are based on dynamical systems, with standard approaches ranging from K-compartments ordinary differential equations (ODEs) to delay differential equations (DDEs), to capture the relatively constant duration of replication and bursting once a parasite infects a host red blood cell. Using malariatherapy data, which offers fine-scale resolution on the dynamics of infection across a number of individual hosts, we compare the fit and robustness of one of these standard approaches (K-compartments ODE) with a partial differential equations (PDEs) model, which explicitly tracks the "age" of an infected cell. While both models perform quite similarly in terms of goodness-of-fit for suitably chosen K, the K-compartments ODE model particularly overestimates parasite densities early on in infections when the number of repeated compartments is not large enough. Finally, the K-compartments ODE model (for suitably chosen K) and the PDE model highlight a strong qualitative connection between the density of transmissible parasite stages (i.e., gametocytes) and the density of host-damaging (and asexually-replicating) parasite stages. This finding provides a simple tool for predicting which hosts are most infectious to mosquitoes -vectors of Plasmodium parasites- which is a crucial component of global efforts to control and eliminate malaria.

Mathematical modeling of forest ecosystems by a reaction-diffusion-advection system: impacts of climate change and deforestation.

We present an innovative mathematical model for studying the dynamics of forest ecosystems. Our model is determined by an age-structured reaction-diffusion-advection system in which the roles of the water resource and of the atmospheric activity are considered. The model is abstract but constructed in such a manner that it can be applied to real-world forest areas; thus it allows to establish an infinite number of scenarios for testing the robustness and resilience of forest ecosystems to anthropic actions or to climate change. We establish the well-posedness of the reaction-diffusion-advection model by using the method of characteristics and by reducing the initial system to a reaction-diffusion problem. The existence and stability of stationary homogeneous and stationary heterogeneous solutions are investigated, so as to prove that the model is able to reproduce relevant equilibrium states of the forest ecosystem. We show that the model fits with the principle of almost uniform precipitation over forested areas and of exponential decrease of precipitation over deforested areas. Furthermore, we present a selection of numerical simulations for an abstract forest ecosystem, in order to analyze the stability of the steady states, to investigate the impact of anthropic perturbations such as deforestation and to explore the effects of climate change on the dynamics of the forest ecosystem.

Convergence to a pulsating travelling wave for an epidemic reaction-diffusion system with non-diffusive susceptible population.

In this work we study the asymptotic behaviour of the Kermack-McKendrick reaction-diffusion system in a periodic environment with non-diffusive susceptible population. This problem was proposed by Kallen et al. as a model for the spatial spread for epidemics, where it can be reasonable to assume that the susceptible population is motionless. For arbitrary dimensional space we prove that large classes of solutions of such a system have an asymptotic spreading speed in large time, and that the infected population has some pulse-like asymptotic shape. The analysis of the one-dimensional problem is more developed, as we are able to uncover a much more accurate description of the profile of solutions. Indeed, we will see that, for some initially compactly supported infected population, the profile of the solution converges to some pulsating travelling wave with minimal speed, that is to some entire solution moving at a constant positive speed and whose profile's shape is periodic in time.

The dispersion of age differences between partners and the asymptotic dynamics of the HIV epidemic.

In this paper, the effect of a change in the distribution of age differences between sexual partners on the dynamics of the HIV epidemic is studied. In a gender- and age-structured compartmental model, it is shown that if the variance of the distribution is small enough, an increase in this variance strongly increases the basic reproduction number. Moreover, if the variance is large enough, the mean age difference barely affects the basic reproduction number. We, therefore, conclude that the local stability of the disease-free equilibrium relies more on the variance than on the mean.

A metapopulation model for malaria with transmission-blocking partial immunity in hosts.

A metapopulation malaria model is proposed using SI and SIRS models for the vectors and hosts, respectively. Recovered hosts are partially immune to the disease and while they cannot directly become infectious again, they can still transmit the parasite to vectors. The basic reproduction number [Formula: see text] is shown to govern the local stability of the disease free equilibrium but not the global behavior of the system because of the potential occurrence of a backward bifurcation. Using type reproduction numbers, we identify the reservoirs of infection and evaluate the effect of control measures. Applications to the spread to non-endemic areas and the interaction between rural and urban areas are given.

A model of a fishery with fish stock involving delay equations.

The aim of this paper is to provide a new mathematical model for a fishery by including a stock variable for the resource. This model takes the form of an infinite delay differential equation. It is mathematically studied and a bifurcation analysis of the steady states is fulfilled. Depending on the different parameters of the problem, we show that Hopf bifurcation may occur leading to oscillating behaviours of the system. The mathematical results are finally discussed.